Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 270 - 381 | 2.8e-09 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 155 |
| AarI | CACCTGC | 1 cut(s) | 736 |
| Acc16I | TGCGCA | 1 cut(s) | 1175 |
| Acc36I | ACCTGC | 1 cut(s) | 736 |
| AclWI | GGATC | 1 cut(s) | 636 |
| AcsI | RAATTY | 2 cut(s) | 556, 590 |
| AcuI | CTGAAG | 1 cut(s) | 339 |
| AfaI | GTAC | 2 cut(s) | 700, 1017 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 198, 338, 521 |
| AhlI | ACTAGT | 1 cut(s) | 77 |
| AjiI | CACGTC | 1 cut(s) | 790 |
| AluBI | AGCT | 8 cut(s) | 284, 494, 511, 602, 634, 813, 978, 1036 |
| AluI | AGCT | 8 cut(s) | 284, 494, 511, 602, 634, 813, 978, 1036 |
| AlwI | GGATC | 1 cut(s) | 636 |
| ApeKI | GCWGC | 6 cut(s) | 412, 581, 796, 938, 975, 1204 |
| ApoI | RAATTY | 2 cut(s) | 556, 590 |
| AseI | ATTAAT | 1 cut(s) | 26 |
| AspLEI | GCGC | 1 cut(s) | 1176 |
| AspS9I | GGNCC | 1 cut(s) | 722 |
| AsuHPI | GGTGA | 1 cut(s) | 456 |
| AsuII | TTCGAA | 1 cut(s) | 487 |
| AvaII | GGWCC | 1 cut(s) | 722 |
| BbsI | GAAGAC | 1 cut(s) | 453 |
| BbvI | GCAGC | 5 cut(s) | 399, 593, 783, 925, 987 |
| BccI | CCATC | 6 cut(s) | 257, 520, 546, 607, 1117, 1151 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 920, 954, 1124, 1158 |
| BcuI | ACTAGT | 1 cut(s) | 77 |
| BfaI | CTAG | 6 cut(s) | 78, 476, 641, 696, 954, 1216 |
| BfmI | CTRYAG | 1 cut(s) | 221 |
| BfuAI | ACCTGC | 1 cut(s) | 736 |
| BisI | GCNGC | 6 cut(s) | 413, 582, 797, 939, 976, 1205 |
| BlsI | GCNGC | 6 cut(s) | 414, 583, 798, 940, 977, 1206 |
| BmcAI | AGTACT | 1 cut(s) | 700 |
| Bme18I | GGWCC | 1 cut(s) | 722 |
| BmgBI | CACGTC | 1 cut(s) | 790 |
| BmgT120I | GGNCC | 1 cut(s) | 722 |
| BmiI | GGNNCC | 2 cut(s) | 657, 907 |
| BmsI | GCATC | 5 cut(s) | 275, 353, 826, 1012, 1189 |
| BpiI | GAAGAC | 1 cut(s) | 453 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1037 |
| Bpu14I | TTCGAA | 1 cut(s) | 487 |
| BsaBI | GATNNNNATC | 1 cut(s) | 627 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 198, 338, 521 |
| Bse1I | ACTGG | 2 cut(s) | 332, 907 |
| Bse8I | GATNNNNATC | 1 cut(s) | 627 |
| BseGI | GGATG | 5 cut(s) | 531, 618, 817, 1081, 1180 |
| BseJI | GATNNNNATC | 1 cut(s) | 627 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 198, 338, 521 |
| BseMII | CTCAG | 2 cut(s) | 744, 882 |
| BseNI | ACTGG | 2 cut(s) | 332, 907 |
| BseRI | GAGGAG | 2 cut(s) | 680, 692 |
| BseXI | GCAGC | 5 cut(s) | 399, 593, 783, 925, 987 |
| BslFI | GGGAC | 2 cut(s) | 408, 527 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 198, 338, 521 |
| BsmFI | GGGAC | 2 cut(s) | 408, 527 |
| Bsp119I | TTCGAA | 1 cut(s) | 487 |
| Bsp143I | GATC | 2 cut(s) | 628, 766 |
| BspCNI | CTCAG | 2 cut(s) | 745, 883 |
| BspHI | TCATGA | 1 cut(s) | 841 |
| BspLI | GGNNCC | 2 cut(s) | 657, 907 |
| BspMAI | CTGCAG | 1 cut(s) | 225 |
| BspMI | ACCTGC | 1 cut(s) | 736 |
| BspPI | GGATC | 1 cut(s) | 636 |
| BspT104I | TTCGAA | 1 cut(s) | 487 |
| BsrI | ACTGG | 2 cut(s) | 332, 907 |
| BssMI | GATC | 2 cut(s) | 628, 766 |
| Bst4CI | ACNGT | 2 cut(s) | 256, 826 |
| Bst6I | CTCTTC | 3 cut(s) | 401, 657, 1059 |
| BstBI | TTCGAA | 1 cut(s) | 487 |
| BstC8I | GCNNGC | 4 cut(s) | 200, 811, 815, 1178 |
| BstDEI | CTNAG | 4 cut(s) | 753, 773, 891, 1037 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 519 |
| BstF5I | GGATG | 5 cut(s) | 531, 618, 817, 1081, 1180 |
| BstHHI | GCGC | 1 cut(s) | 1176 |
| BstKTI | GATC | 2 cut(s) | 631, 769 |
| BstMBI | GATC | 2 cut(s) | 628, 766 |
| BstNSI | RCATGY | 2 cut(s) | 355, 359 |
| BstSFI | CTRYAG | 1 cut(s) | 221 |
| BstV1I | GCAGC | 5 cut(s) | 399, 593, 783, 925, 987 |
| BstV2I | GAAGAC | 1 cut(s) | 453 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 552 |
| BtrI | CACGTC | 1 cut(s) | 790 |
| BtsCI | GGATG | 5 cut(s) | 531, 618, 817, 1081, 1180 |
| BtsI | GCAGTG | 1 cut(s) | 230 |
| BtsIMutI | CAGTG | 2 cut(s) | 230, 252 |
| BveI | ACCTGC | 1 cut(s) | 736 |
| Cac8I | GCNNGC | 4 cut(s) | 200, 811, 815, 1178 |
| CciI | TCATGA | 1 cut(s) | 841 |
| CfoI | GCGC | 1 cut(s) | 1176 |
| Cfr13I | GGNCC | 1 cut(s) | 722 |
| CseI | GACGC | 1 cut(s) | 802 |
| Csp6I | GTAC | 2 cut(s) | 699, 1016 |
| CviAII | CATG | 5 cut(s) | 213, 352, 356, 398, 842 |
| CviQI | GTAC | 2 cut(s) | 699, 1016 |
| DdeI | CTNAG | 4 cut(s) | 753, 773, 891, 1037 |
| DpnI | GATC | 2 cut(s) | 630, 768 |
| DpnII | GATC | 2 cut(s) | 628, 766 |
| Eam1104I | CTCTTC | 3 cut(s) | 401, 657, 1059 |
| EarI | CTCTTC | 3 cut(s) | 401, 657, 1059 |
| Eco47I | GGWCC | 1 cut(s) | 722 |
| Eco57I | CTGAAG | 1 cut(s) | 339 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 519 |
| EcoRI | GAATTC | 1 cut(s) | 556 |
| EcoT22I | ATGCAT | 2 cut(s) | 268, 357 |
| FaeI | CATG | 5 cut(s) | 216, 355, 359, 401, 845 |
| FaqI | GGGAC | 2 cut(s) | 408, 527 |
| FatI | CATG | 5 cut(s) | 212, 351, 355, 397, 841 |
| FauNDI | CATATG | 1 cut(s) | 1170 |
| Fnu4HI | GCNGC | 6 cut(s) | 413, 582, 797, 939, 976, 1205 |
| FokI | GGATG | 5 cut(s) | 538, 625, 804, 1088, 1167 |
| Fsp4HI | GCNGC | 6 cut(s) | 413, 582, 797, 939, 976, 1205 |
| FspBI | CTAG | 6 cut(s) | 78, 476, 641, 696, 954, 1216 |
| FspI | TGCGCA | 1 cut(s) | 1175 |
| GlaI | GCGC | 1 cut(s) | 1175 |
| GluI | GCNGC | 6 cut(s) | 413, 582, 797, 939, 976, 1205 |
| HgaI | GACGC | 1 cut(s) | 802 |
| HhaI | GCGC | 1 cut(s) | 1176 |
| Hin1II | CATG | 5 cut(s) | 216, 355, 359, 401, 845 |
| Hin6I | GCGC | 1 cut(s) | 1174 |
| HinP1I | GCGC | 1 cut(s) | 1174 |
| HindIII | AAGCTT | 4 cut(s) | 509, 600, 811, 1034 |
| HinfI | GANTC | 2 cut(s) | 209, 691 |
| HphI | GGTGA | 1 cut(s) | 456 |
| Hpy166II | GTNNAC | 1 cut(s) | 218 |
| Hpy188I | TCNGA | 6 cut(s) | 319, 387, 690, 739, 910, 1010 |
| Hpy188III | TCNNGA | 5 cut(s) | 31, 536, 595, 842, 983 |
| Hpy8I | GTNNAC | 1 cut(s) | 218 |
| Hpy99I | CGWCG | 1 cut(s) | 791 |
| HpyAV | CCTTC | 3 cut(s) | 34, 314, 1054 |
| HpyCH4III | ACNGT | 2 cut(s) | 256, 826 |
| HpyCH4IV | ACGT | 1 cut(s) | 789 |
| HpyF3I | CTNAG | 4 cut(s) | 753, 773, 891, 1037 |
| HpySE526I | ACGT | 1 cut(s) | 789 |
| Hsp92II | CATG | 5 cut(s) | 216, 355, 359, 401, 845 |
| HspAI | GCGC | 1 cut(s) | 1174 |
| Kzo9I | GATC | 2 cut(s) | 628, 766 |
| LpnPI | CCDG | 8 cut(s) | 34, 184, 345, 672, 741, 888, 903, 1162 |
| Lsp1109I | GCAGC | 5 cut(s) | 399, 593, 783, 925, 987 |
| LweI | GCATC | 5 cut(s) | 275, 353, 826, 1012, 1189 |
| MaeI | CTAG | 6 cut(s) | 78, 476, 641, 696, 954, 1216 |
| MaeII | ACGT | 1 cut(s) | 789 |
| MaeIII | GTNAC | 3 cut(s) | 323, 790, 850 |
| MalI | GATC | 2 cut(s) | 630, 768 |
| MboI | GATC | 2 cut(s) | 628, 766 |
| MboII | GAAGA | 5 cut(s) | 418, 453, 632, 674, 1076 |
| MluCI | AATT | 4 cut(s) | 23, 556, 590, 1042 |
| MlyI | GAGTC | 1 cut(s) | 218 |
| MmeI | TCCRAC | 3 cut(s) | 555, 700, 845 |
| Mph1103I | ATGCAT | 2 cut(s) | 268, 357 |
| MseI | TTAA | 8 cut(s) | 26, 93, 245, 519, 587, 651, 926, 1110 |
| MslI | CAYNNNNRTG | 1 cut(s) | 356 |
| MspA1I | CMGCKG | 1 cut(s) | 634 |
| NdeI | CATATG | 1 cut(s) | 1170 |
| NdeII | GATC | 2 cut(s) | 628, 766 |
| NlaIII | CATG | 5 cut(s) | 216, 355, 359, 401, 845 |
| NlaIV | GGNNCC | 2 cut(s) | 657, 907 |
| NmuCI | GTSAC | 1 cut(s) | 790 |
| NsbI | TGCGCA | 1 cut(s) | 1175 |
| NsiI | ATGCAT | 2 cut(s) | 268, 357 |
| NspI | RCATGY | 2 cut(s) | 355, 359 |
| NspV | TTCGAA | 1 cut(s) | 487 |
| PagI | TCATGA | 1 cut(s) | 841 |
| PaqCI | CACCTGC | 1 cut(s) | 736 |
| PfeI | GAWTC | 1 cut(s) | 691 |
| PkrI | GCNGC | 6 cut(s) | 414, 583, 798, 940, 977, 1206 |
| PleI | GAGTC | 1 cut(s) | 217 |
| PpsI | GAGTC | 1 cut(s) | 217 |
| PshBI | ATTAAT | 1 cut(s) | 26 |
| PsiI | TTATAA | 1 cut(s) | 155 |
| PspN4I | GGNNCC | 2 cut(s) | 657, 907 |
| PspPI | GGNCC | 1 cut(s) | 722 |
| PstI | CTGCAG | 1 cut(s) | 225 |
| PvuII | CAGCTG | 1 cut(s) | 634 |
| RsaI | GTAC | 2 cut(s) | 700, 1017 |
| RsaNI | GTAC | 2 cut(s) | 699, 1016 |
| RseI | CAYNNNNRTG | 1 cut(s) | 356 |
| SaqAI | TTAA | 8 cut(s) | 26, 93, 245, 519, 587, 651, 926, 1110 |
| SatI | GCNGC | 6 cut(s) | 413, 582, 797, 939, 976, 1205 |
| Sau3AI | GATC | 2 cut(s) | 628, 766 |
| Sau96I | GGNCC | 1 cut(s) | 722 |
| ScaI | AGTACT | 1 cut(s) | 700 |
| SchI | GAGTC | 1 cut(s) | 218 |
| SfaNI | GCATC | 5 cut(s) | 275, 353, 826, 1012, 1189 |
| SfcI | CTRYAG | 1 cut(s) | 221 |
| SfuI | TTCGAA | 1 cut(s) | 487 |
| SinI | GGWCC | 1 cut(s) | 722 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 356 |
| SpeI | ACTAGT | 1 cut(s) | 77 |
| Sse9I | AATT | 4 cut(s) | 23, 556, 590, 1042 |
| SspMI | CTAG | 6 cut(s) | 78, 476, 641, 696, 954, 1216 |
| TaaI | ACNGT | 2 cut(s) | 256, 826 |
| TaiI | ACGT | 1 cut(s) | 792 |
| TaqI | TCGA | 4 cut(s) | 258, 472, 487, 1020 |
| TasI | AATT | 4 cut(s) | 23, 556, 590, 1042 |
| TatI | WGTACW | 2 cut(s) | 698, 1015 |
| TfiI | GAWTC | 1 cut(s) | 691 |
| Tru1I | TTAA | 8 cut(s) | 26, 93, 245, 519, 587, 651, 926, 1110 |
| Tru9I | TTAA | 8 cut(s) | 26, 93, 245, 519, 587, 651, 926, 1110 |
| TscAI | CASTG | 2 cut(s) | 230, 259 |
| TseFI | GTSAC | 1 cut(s) | 790 |
| TseI | GCWGC | 6 cut(s) | 412, 581, 796, 938, 975, 1204 |
| Tsp45I | GTSAC | 1 cut(s) | 790 |
| TspDTI | ATGAA | 3 cut(s) | 323, 830, 962 |
| TspGWI | ACGGA | 1 cut(s) | 80 |
| TspRI | CASTG | 2 cut(s) | 230, 259 |
| VpaK11BI | GGWCC | 1 cut(s) | 722 |
| VspI | ATTAAT | 1 cut(s) | 26 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 519 |
| XapI | RAATTY | 2 cut(s) | 556, 590 |
| XceI | RCATGY | 2 cut(s) | 355, 359 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 388 |
| XspI | CTAG | 6 cut(s) | 78, 476, 641, 696, 954, 1216 |
| ZrmI | AGTACT | 1 cut(s) | 700 |
| Zsp2I | ATGCAT | 2 cut(s) | 268, 357 |