Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 127 - 171 | 2.6e-07 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 546 |
| AciI | CCGC | 1 cut(s) | 339 |
| AclWI | GGATC | 2 cut(s) | 330, 391 |
| AcsI | RAATTY | 4 cut(s) | 37, 58, 330, 506 |
| AcuI | CTGAAG | 3 cut(s) | 150, 520, 755 |
| AfaI | GTAC | 1 cut(s) | 72 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 345, 656 |
| AflII | CTTAAG | 1 cut(s) | 44 |
| AgsI | TTSAA | 6 cut(s) | 58, 125, 208, 622, 710, 838 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 432, 464 |
| AluBI | AGCT | 3 cut(s) | 604, 638, 647 |
| AluI | AGCT | 3 cut(s) | 604, 638, 647 |
| Alw21I | GWGCWC | 2 cut(s) | 271, 428 |
| Alw26I | GTCTC | 1 cut(s) | 729 |
| AlwI | GGATC | 2 cut(s) | 330, 391 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 733 |
| ApeKI | GCWGC | 1 cut(s) | 601 |
| ApoI | RAATTY | 4 cut(s) | 37, 58, 330, 506 |
| AspLEI | GCGC | 1 cut(s) | 51 |
| AsuHPI | GGTGA | 1 cut(s) | 773 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 359, 392 |
| Bbv12I | GWGCWC | 2 cut(s) | 271, 428 |
| BbvI | GCAGC | 1 cut(s) | 613 |
| BccI | CCATC | 2 cut(s) | 233, 689 |
| BciVI | GTATCC | 1 cut(s) | 93 |
| BclI | TGATCA | 2 cut(s) | 175, 466 |
| BcoDI | GTCTC | 1 cut(s) | 729 |
| BfaI | CTAG | 2 cut(s) | 666, 856 |
| BfrI | CTTAAG | 1 cut(s) | 44 |
| BfuI | GTATCC | 1 cut(s) | 93 |
| BisI | GCNGC | 1 cut(s) | 602 |
| BlsI | GCNGC | 1 cut(s) | 603 |
| BmiI | GGNNCC | 1 cut(s) | 798 |
| BmrI | ACTGGG | 1 cut(s) | 105 |
| BmuI | ACTGGG | 1 cut(s) | 105 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 410, 442 |
| BpuEI | CTTGAG | 1 cut(s) | 356 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 345, 656 |
| Bse1I | ACTGG | 2 cut(s) | 100, 798 |
| Bse3DI | GCAATG | 1 cut(s) | 679 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 345, 656 |
| BseMI | GCAATG | 1 cut(s) | 679 |
| BseMII | CTCAG | 1 cut(s) | 740 |
| BseNI | ACTGG | 2 cut(s) | 100, 798 |
| BseXI | GCAGC | 1 cut(s) | 613 |
| BsgI | GTGCAG | 1 cut(s) | 620 |
| BsiHKAI | GWGCWC | 2 cut(s) | 271, 428 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 345, 656 |
| BsmAI | GTCTC | 1 cut(s) | 729 |
| Bsp1286I | GDGCHC | 2 cut(s) | 271, 428 |
| Bsp143I | GATC | 4 cut(s) | 175, 335, 383, 466 |
| BspACI | CCGC | 1 cut(s) | 339 |
| BspCNI | CTCAG | 1 cut(s) | 739 |
| BspHI | TCATGA | 1 cut(s) | 415 |
| BspLI | GGNNCC | 1 cut(s) | 798 |
| BspPI | GGATC | 2 cut(s) | 330, 391 |
| BspTI | CTTAAG | 1 cut(s) | 44 |
| BsrDI | GCAATG | 1 cut(s) | 679 |
| BsrI | ACTGG | 2 cut(s) | 100, 798 |
| BssMI | GATC | 4 cut(s) | 175, 335, 383, 466 |
| BssNAI | GTATAC | 1 cut(s) | 547 |
| Bst1107I | GTATAC | 1 cut(s) | 547 |
| Bst4CI | ACNGT | 4 cut(s) | 157, 394, 448, 551 |
| BstAFI | CTTAAG | 1 cut(s) | 44 |
| BstDEI | CTNAG | 2 cut(s) | 726, 804 |
| BstHHI | GCGC | 1 cut(s) | 51 |
| BstKTI | GATC | 4 cut(s) | 178, 338, 386, 469 |
| BstMAI | GTCTC | 1 cut(s) | 729 |
| BstMBI | GATC | 4 cut(s) | 175, 335, 383, 466 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 275, 644 |
| BstV1I | GCAGC | 1 cut(s) | 613 |
| BstX2I | RGATCY | 1 cut(s) | 383 |
| BstYI | RGATCY | 1 cut(s) | 383 |
| BstZ17I | GTATAC | 1 cut(s) | 547 |
| BsuI | GTATCC | 1 cut(s) | 93 |
| BtsIMutI | CAGTG | 1 cut(s) | 385 |
| CaiI | CAGNNNCTG | 1 cut(s) | 733 |
| CciI | TCATGA | 1 cut(s) | 415 |
| CfoI | GCGC | 1 cut(s) | 51 |
| Csp6I | GTAC | 1 cut(s) | 71 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 361, 396 |
| CviAII | CATG | 3 cut(s) | 114, 314, 416 |
| CviJI | RGCY | 4 cut(s) | 182, 604, 638, 647 |
| CviKI_1 | RGCY | 4 cut(s) | 182, 604, 638, 647 |
| CviQI | GTAC | 1 cut(s) | 71 |
| DdeI | CTNAG | 2 cut(s) | 726, 804 |
| DpnI | GATC | 4 cut(s) | 177, 337, 385, 468 |
| DpnII | GATC | 4 cut(s) | 175, 335, 383, 466 |
| DraI | TTTAAA | 2 cut(s) | 511, 829 |
| Eco57I | CTGAAG | 3 cut(s) | 150, 520, 755 |
| EcoRI | GAATTC | 1 cut(s) | 330 |
| EcoT22I | ATGCAT | 1 cut(s) | 255 |
| FaeI | CATG | 3 cut(s) | 117, 317, 419 |
| FatI | CATG | 3 cut(s) | 113, 313, 415 |
| FbaI | TGATCA | 2 cut(s) | 175, 466 |
| FblI | GTMKAC | 1 cut(s) | 546 |
| Fnu4HI | GCNGC | 1 cut(s) | 602 |
| Fsp4HI | GCNGC | 1 cut(s) | 602 |
| FspBI | CTAG | 2 cut(s) | 666, 856 |
| GlaI | GCGC | 1 cut(s) | 50 |
| GluI | GCNGC | 1 cut(s) | 602 |
| HhaI | GCGC | 1 cut(s) | 51 |
| Hin1II | CATG | 3 cut(s) | 117, 317, 419 |
| Hin6I | GCGC | 1 cut(s) | 49 |
| HinP1I | GCGC | 1 cut(s) | 49 |
| HinfI | GANTC | 3 cut(s) | 280, 317, 808 |
| HphI | GGTGA | 1 cut(s) | 773 |
| Hpy166II | GTNNAC | 3 cut(s) | 147, 547, 853 |
| Hpy188I | TCNGA | 2 cut(s) | 285, 735 |
| Hpy188III | TCNNGA | 2 cut(s) | 236, 416 |
| Hpy8I | GTNNAC | 3 cut(s) | 147, 547, 853 |
| HpyAV | CCTTC | 1 cut(s) | 841 |
| HpyCH4III | ACNGT | 4 cut(s) | 157, 394, 448, 551 |
| HpyCH4IV | ACGT | 1 cut(s) | 290 |
| HpyCH4V | TGCA | 6 cut(s) | 14, 253, 313, 410, 478, 601 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 275, 644 |
| HpyF3I | CTNAG | 2 cut(s) | 726, 804 |
| HpySE526I | ACGT | 1 cut(s) | 290 |
| Hsp92II | CATG | 3 cut(s) | 117, 317, 419 |
| HspAI | GCGC | 1 cut(s) | 49 |
| Ksp22I | TGATCA | 2 cut(s) | 175, 466 |
| Kzo9I | GATC | 4 cut(s) | 175, 335, 383, 466 |
| LmnI | GCTCC | 2 cut(s) | 643, 652 |
| LpnPI | CCDG | 4 cut(s) | 81, 81, 164, 779 |
| Lsp1109I | GCAGC | 1 cut(s) | 613 |
| MaeI | CTAG | 2 cut(s) | 666, 856 |
| MaeII | ACGT | 1 cut(s) | 290 |
| MaeIII | GTNAC | 2 cut(s) | 394, 562 |
| MalI | GATC | 4 cut(s) | 177, 337, 385, 468 |
| MboI | GATC | 4 cut(s) | 175, 335, 383, 466 |
| MboII | GAAGA | 3 cut(s) | 368, 722, 748 |
| MflI | RGATCY | 1 cut(s) | 383 |
| MhlI | GDGCHC | 2 cut(s) | 271, 428 |
| MlyI | GAGTC | 1 cut(s) | 326 |
| MmeI | TCCRAC | 1 cut(s) | 330 |
| MnlI | CCTC | 5 cut(s) | 289, 346, 752, 769, 810 |
| Mph1103I | ATGCAT | 1 cut(s) | 255 |
| MslI | CAYNNNNRTG | 1 cut(s) | 494 |
| MspA1I | CMGCKG | 1 cut(s) | 341 |
| MspCI | CTTAAG | 1 cut(s) | 44 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 275, 644 |
| NdeII | GATC | 4 cut(s) | 175, 335, 383, 466 |
| NlaIII | CATG | 3 cut(s) | 117, 317, 419 |
| NlaIV | GGNNCC | 1 cut(s) | 798 |
| NmuCI | GTSAC | 2 cut(s) | 394, 562 |
| NsiI | ATGCAT | 1 cut(s) | 255 |
| PagI | TCATGA | 1 cut(s) | 415 |
| PfeI | GAWTC | 2 cut(s) | 280, 808 |
| PkrI | GCNGC | 1 cut(s) | 603 |
| PleI | GAGTC | 1 cut(s) | 325 |
| PpsI | GAGTC | 1 cut(s) | 325 |
| PspN4I | GGNNCC | 1 cut(s) | 798 |
| PstNI | CAGNNNCTG | 1 cut(s) | 733 |
| PsuI | RGATCY | 1 cut(s) | 383 |
| RsaI | GTAC | 1 cut(s) | 72 |
| RsaNI | GTAC | 1 cut(s) | 71 |
| RseI | CAYNNNNRTG | 1 cut(s) | 494 |
| SatI | GCNGC | 1 cut(s) | 602 |
| Sau3AI | GATC | 4 cut(s) | 175, 335, 383, 466 |
| SchI | GAGTC | 1 cut(s) | 326 |
| SduI | GDGCHC | 2 cut(s) | 271, 428 |
| SmiI | ATTTAAAT | 2 cut(s) | 511, 829 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 494 |
| SmlI | CTYRAG | 2 cut(s) | 44, 371 |
| SmoI | CTYRAG | 2 cut(s) | 44, 371 |
| SsiI | CCGC | 1 cut(s) | 339 |
| SspI | AATATT | 2 cut(s) | 324, 406 |
| SspMI | CTAG | 2 cut(s) | 666, 856 |
| SwaI | ATTTAAAT | 2 cut(s) | 511, 829 |
| TaaI | ACNGT | 4 cut(s) | 157, 394, 448, 551 |
| TaiI | ACGT | 1 cut(s) | 293 |
| TaqI | TCGA | 1 cut(s) | 334 |
| TfiI | GAWTC | 2 cut(s) | 280, 808 |
| TscAI | CASTG | 1 cut(s) | 385 |
| TseFI | GTSAC | 2 cut(s) | 394, 562 |
| TseI | GCWGC | 1 cut(s) | 601 |
| Tsp45I | GTSAC | 2 cut(s) | 394, 562 |
| TspDTI | ATGAA | 6 cut(s) | 404, 512, 516, 573, 645, 651 |
| TspRI | CASTG | 1 cut(s) | 385 |
| Vha464I | CTTAAG | 1 cut(s) | 44 |
| XapI | RAATTY | 4 cut(s) | 37, 58, 330, 506 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 511 |
| XmiI | GTMKAC | 1 cut(s) | 546 |
| XspI | CTAG | 2 cut(s) | 666, 856 |
| Zsp2I | ATGCAT | 1 cut(s) | 255 |