BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1933 |
| Acc36I | ACCTGC | 2 cut(s) | 421, 1915 |
| AccB1I | GGYRCC | 1 cut(s) | 1487 |
| AccI | GTMKAC | 3 cut(s) | 106, 967, 1299 |
| AccII | CGCG | 2 cut(s) | 1023, 1810 |
| AciI | CCGC | 2 cut(s) | 1418, 1593 |
| AclWI | GGATC | 3 cut(s) | 139, 1424, 1575 |
| AcoI | YGGCCR | 2 cut(s) | 865, 1419 |
| AcsI | RAATTY | 4 cut(s) | 253, 1004, 1373, 1473 |
| AcuI | CTGAAG | 1 cut(s) | 510 |
| AfaI | GTAC | 5 cut(s) | 139, 641, 882, 1115, 1709 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1497, 1616 |
| AflIII | ACRYGT | 1 cut(s) | 1815 |
| AgsI | TTSAA | 7 cut(s) | 311, 929, 1100, 1181, 1216, 1379, 1861 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 835 |
| AhlI | ACTAGT | 2 cut(s) | 140, 1670 |
| AjiI | CACGTC | 1 cut(s) | 1257 |
| AjnI | CCWGG | 4 cut(s) | 565, 1035, 1492, 1741 |
| Alw21I | GWGCWC | 4 cut(s) | 241, 1290, 1533, 1900 |
| Alw26I | GTCTC | 2 cut(s) | 822, 1263 |
| Alw44I | GTGCAC | 1 cut(s) | 1896 |
| AlwI | GGATC | 3 cut(s) | 139, 1424, 1575 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 17 |
| AoxI | GGCC | 4 cut(s) | 597, 865, 1419, 1495 |
| ApaLI | GTGCAC | 1 cut(s) | 1896 |
| ApeKI | GCWGC | 2 cut(s) | 890, 1306 |
| ApoI | RAATTY | 4 cut(s) | 253, 1004, 1373, 1473 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 139, 171 |
| AspA2I | CCTAGG | 1 cut(s) | 1781 |
| AspLEI | GCGC | 3 cut(s) | 1810, 1812, 1934 |
| AspS9I | GGNCC | 1 cut(s) | 597 |
| AsuHPI | GGTGA | 5 cut(s) | 95, 553, 950, 1052, 1243 |
| AvrII | CCTAGG | 1 cut(s) | 1781 |
| BaeGI | GKGCMC | 3 cut(s) | 1169, 1492, 1900 |
| BalI | TGGCCA | 1 cut(s) | 867 |
| BanI | GGYRCC | 1 cut(s) | 1487 |
| BanII | GRGCYC | 3 cut(s) | 241, 1290, 1533 |
| BbsI | GAAGAC | 1 cut(s) | 717 |
| Bbv12I | GWGCWC | 4 cut(s) | 241, 1290, 1533, 1900 |
| BbvI | GCAGC | 2 cut(s) | 902, 1318 |
| BccI | CCATC | 5 cut(s) | 602, 904, 1556, 1798, 1922 |
| BceAI | ACGGC | 1 cut(s) | 1406 |
| BciT130I | CCWGG | 4 cut(s) | 567, 1037, 1494, 1743 |
| BciVI | GTATCC | 2 cut(s) | 1797, 1938 |
| BclI | TGATCA | 1 cut(s) | 259 |
| BcoDI | GTCTC | 2 cut(s) | 822, 1263 |
| BcuI | ACTAGT | 2 cut(s) | 140, 1670 |
| BfaI | CTAG | 9 cut(s) | 141, 935, 1058, 1206, 1611, 1629, 1671, 1782, 1958 |
| BfmI | CTRYAG | 2 cut(s) | 461, 1661 |
| BfuAI | ACCTGC | 2 cut(s) | 421, 1915 |
| BfuI | GTATCC | 2 cut(s) | 1797, 1938 |
| BglII | AGATCT | 1 cut(s) | 516 |
| BisI | GCNGC | 3 cut(s) | 891, 1307, 1419 |
| BlnI | CCTAGG | 1 cut(s) | 1781 |
| BlpI | GCTNAGC | 1 cut(s) | 1555 |
| BlsI | GCNGC | 3 cut(s) | 892, 1308, 1420 |
| BmcAI | AGTACT | 2 cut(s) | 139, 1709 |
| Bme1390I | CCNGG | 4 cut(s) | 567, 1037, 1494, 1743 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 835 |
| BmgBI | CACGTC | 1 cut(s) | 1257 |
| BmgT120I | GGNCC | 1 cut(s) | 597 |
| BmiI | GGNNCC | 2 cut(s) | 1489, 1719 |
| BmrFI | CCNGG | 4 cut(s) | 567, 1037, 1494, 1743 |
| BmsI | GCATC | 3 cut(s) | 4, 910, 1815 |
| BpiI | GAAGAC | 1 cut(s) | 717 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1555 |
| BsaBI | GATNNNNATC | 3 cut(s) | 43, 759, 1656 |
| BsaJI | CCNNGG | 5 cut(s) | 1036, 1492, 1563, 1741, 1781 |
| BsaWI | WCCGGW | 1 cut(s) | 1865 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1860, 1890 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1497, 1616 |
| Bse1I | ACTGG | 3 cut(s) | 1455, 1648, 1946 |
| Bse3DI | GCAATG | 3 cut(s) | 868, 1067, 1079 |
| Bse8I | GATNNNNATC | 3 cut(s) | 43, 759, 1656 |
| BseBI | CCWGG | 4 cut(s) | 567, 1037, 1494, 1743 |
| BseDI | CCNNGG | 5 cut(s) | 1036, 1492, 1563, 1741, 1781 |
| BseGI | GGATG | 5 cut(s) | 283, 613, 925, 1830, 1914 |
| BseJI | GATNNNNATC | 3 cut(s) | 43, 759, 1656 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1497, 1616 |
| BseMI | GCAATG | 3 cut(s) | 868, 1067, 1079 |
| BseMII | CTCAG | 3 cut(s) | 139, 606, 1448 |
| BseNI | ACTGG | 3 cut(s) | 1455, 1648, 1946 |
| BsePI | GCGCGC | 1 cut(s) | 1808 |
| BseRI | GAGGAG | 1 cut(s) | 1381 |
| BseSI | GKGCMC | 3 cut(s) | 1169, 1492, 1900 |
| BseX3I | CGGCCG | 1 cut(s) | 1419 |
| BseXI | GCAGC | 2 cut(s) | 902, 1318 |
| BsgI | GTGCAG | 2 cut(s) | 618, 909 |
| Bsh1236I | CGCG | 2 cut(s) | 1023, 1810 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1422 |
| BshFI | GGCC | 4 cut(s) | 599, 867, 1421, 1497 |
| BshNI | GGYRCC | 1 cut(s) | 1487 |
| BsiEI | CGRYCG | 1 cut(s) | 1422 |
| BsiHKAI | GWGCWC | 4 cut(s) | 241, 1290, 1533, 1900 |
| BsiSI | CCGG | 2 cut(s) | 1498, 1866 |
| BslFI | GGGAC | 3 cut(s) | 160, 823, 1637 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1497, 1616 |
| BsmAI | GTCTC | 2 cut(s) | 822, 1263 |
| BsmBI | CGTCTC | 1 cut(s) | 1263 |
| BsmFI | GGGAC | 3 cut(s) | 160, 823, 1637 |
| BsmI | GAATGC | 1 cut(s) | 1856 |
| BsnI | GGCC | 4 cut(s) | 599, 867, 1421, 1497 |
| Bsp1286I | GDGCHC | 6 cut(s) | 241, 1169, 1290, 1492, 1533, 1900 |
| Bsp1407I | TGTACA | 1 cut(s) | 1113 |
| Bsp143I | GATC | 8 cut(s) | 131, 259, 379, 516, 760, 1429, 1567, 1882 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1555 |
| Bsp68I | TCGCGA | 1 cut(s) | 1023 |
| BspACI | CCGC | 2 cut(s) | 1418, 1593 |
| BspANI | GGCC | 4 cut(s) | 599, 867, 1421, 1497 |
| BspCNI | CTCAG | 3 cut(s) | 138, 607, 1447 |
| BspFNI | CGCG | 2 cut(s) | 1023, 1810 |
| BspHI | TCATGA | 1 cut(s) | 1282 |
| BspLI | GGNNCC | 2 cut(s) | 1489, 1719 |
| BspMAI | CTGCAG | 1 cut(s) | 1665 |
| BspMI | ACCTGC | 2 cut(s) | 421, 1915 |
| BspPI | GGATC | 3 cut(s) | 139, 1424, 1575 |
| BspQI | GCTCTTC | 2 cut(s) | 181, 306 |
| BspT107I | GGYRCC | 1 cut(s) | 1487 |
| BsrDI | GCAATG | 3 cut(s) | 868, 1067, 1079 |
| BsrGI | TGTACA | 1 cut(s) | 1113 |
| BsrI | ACTGG | 3 cut(s) | 1455, 1648, 1946 |
| BssECI | CCNNGG | 5 cut(s) | 1036, 1492, 1563, 1741, 1781 |
| BssHII | GCGCGC | 1 cut(s) | 1808 |
| BssMI | GATC | 8 cut(s) | 131, 259, 379, 516, 760, 1429, 1567, 1882 |
| BssNAI | GTATAC | 2 cut(s) | 968, 1300 |
| BssT1I | CCWWGG | 2 cut(s) | 1563, 1781 |
| Bst1107I | GTATAC | 2 cut(s) | 968, 1300 |
| Bst2UI | CCWGG | 4 cut(s) | 567, 1037, 1494, 1743 |
| Bst4CI | ACNGT | 4 cut(s) | 509, 639, 972, 1198 |
| Bst6I | CTCTTC | 4 cut(s) | 181, 306, 703, 1867 |
| BstAUI | TGTACA | 1 cut(s) | 1113 |
| BstC8I | GCNNGC | 3 cut(s) | 1021, 1607, 1810 |
| BstDEI | CTNAG | 6 cut(s) | 125, 615, 951, 1426, 1434, 1555 |
| BstF5I | GGATG | 5 cut(s) | 283, 613, 925, 1830, 1914 |
| BstFNI | CGCG | 2 cut(s) | 1023, 1810 |
| BstHHI | GCGC | 3 cut(s) | 1810, 1812, 1934 |
| BstKTI | GATC | 8 cut(s) | 134, 262, 382, 519, 763, 1432, 1570, 1885 |
| BstMAI | GTCTC | 2 cut(s) | 822, 1263 |
| BstMBI | GATC | 8 cut(s) | 131, 259, 379, 516, 760, 1429, 1567, 1882 |
| BstMCI | CGRYCG | 1 cut(s) | 1422 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 929, 1127, 1418 |
| BstNI | CCWGG | 4 cut(s) | 567, 1037, 1494, 1743 |
| BstNSI | RCATGY | 1 cut(s) | 718 |
| BstSCI | CCNGG | 4 cut(s) | 565, 1035, 1492, 1741 |
| BstSFI | CTRYAG | 2 cut(s) | 461, 1661 |
| BstSLI | GKGCMC | 3 cut(s) | 1169, 1492, 1900 |
| BstUI | CGCG | 2 cut(s) | 1023, 1810 |
| BstV1I | GCAGC | 2 cut(s) | 902, 1318 |
| BstV2I | GAAGAC | 1 cut(s) | 717 |
| BstX2I | RGATCY | 2 cut(s) | 516, 1429 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1074 |
| BstYI | RGATCY | 2 cut(s) | 516, 1429 |
| BstZ17I | GTATAC | 2 cut(s) | 968, 1300 |
| BstZI | CGGCCG | 1 cut(s) | 1419 |
| BsuI | GTATCC | 2 cut(s) | 1797, 1938 |
| BsuRI | GGCC | 4 cut(s) | 599, 867, 1421, 1497 |
| BtrI | CACGTC | 1 cut(s) | 1257 |
| BtsCI | GGATG | 5 cut(s) | 283, 613, 925, 1830, 1914 |
| BtsI | GCAGTG | 1 cut(s) | 1957 |
| BtsIMutI | CAGTG | 5 cut(s) | 133, 1194, 1641, 1898, 1957 |
| BtuMI | TCGCGA | 1 cut(s) | 1023 |
| BveI | ACCTGC | 2 cut(s) | 421, 1915 |
| Cac8I | GCNNGC | 3 cut(s) | 1021, 1607, 1810 |
| CaiI | CAGNNNCTG | 1 cut(s) | 17 |
| CciI | TCATGA | 1 cut(s) | 1282 |
| CfoI | GCGC | 3 cut(s) | 1810, 1812, 1934 |
| Cfr13I | GGNCC | 1 cut(s) | 597 |
| CseI | GACGC | 1 cut(s) | 1510 |
| Csp6I | GTAC | 5 cut(s) | 138, 640, 881, 1114, 1708 |
| CviAII | CATG | 5 cut(s) | 404, 688, 715, 778, 1283 |
| CviQI | GTAC | 5 cut(s) | 138, 640, 881, 1114, 1708 |
| DdeI | CTNAG | 6 cut(s) | 125, 615, 951, 1426, 1434, 1555 |
| DpnI | GATC | 8 cut(s) | 133, 261, 381, 518, 762, 1431, 1569, 1884 |
| DpnII | GATC | 8 cut(s) | 131, 259, 379, 516, 760, 1429, 1567, 1882 |
| DriI | GACNNNNNGTC | 1 cut(s) | 835 |
| EaeI | YGGCCR | 2 cut(s) | 865, 1419 |
| EagI | CGGCCG | 1 cut(s) | 1419 |
| Eam1104I | CTCTTC | 4 cut(s) | 181, 306, 703, 1867 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 835 |
| EarI | CTCTTC | 4 cut(s) | 181, 306, 703, 1867 |
| Ecl136II | GAGCTC | 3 cut(s) | 239, 1288, 1531 |
| EclXI | CGGCCG | 1 cut(s) | 1419 |
| Eco130I | CCWWGG | 2 cut(s) | 1563, 1781 |
| Eco24I | GRGCYC | 3 cut(s) | 241, 1290, 1533 |
| Eco52I | CGGCCG | 1 cut(s) | 1419 |
| Eco53kI | GAGCTC | 3 cut(s) | 239, 1288, 1531 |
| Eco57I | CTGAAG | 1 cut(s) | 510 |
| EcoICRI | GAGCTC | 3 cut(s) | 239, 1288, 1531 |
| EcoRII | CCWGG | 4 cut(s) | 565, 1035, 1492, 1741 |
| EcoT14I | CCWWGG | 2 cut(s) | 1563, 1781 |
| EcoT38I | GRGCYC | 3 cut(s) | 241, 1290, 1533 |
| ErhI | CCWWGG | 2 cut(s) | 1563, 1781 |
| Esp3I | CGTCTC | 1 cut(s) | 1263 |
| FaeI | CATG | 5 cut(s) | 407, 691, 718, 781, 1286 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 225, 257, 702, 734 |
| FaqI | GGGAC | 3 cut(s) | 160, 823, 1637 |
| FatI | CATG | 5 cut(s) | 403, 687, 714, 777, 1282 |
| FauNDI | CATATG | 2 cut(s) | 1052, 1087 |
| FbaI | TGATCA | 1 cut(s) | 259 |
| FblI | GTMKAC | 3 cut(s) | 106, 967, 1299 |
| Fnu4HI | GCNGC | 3 cut(s) | 891, 1307, 1419 |
| FokI | GGATG | 5 cut(s) | 290, 620, 932, 1837, 1901 |
| FriOI | GRGCYC | 3 cut(s) | 241, 1290, 1533 |
| Fsp4HI | GCNGC | 3 cut(s) | 891, 1307, 1419 |
| FspAI | RTGCGCAY | 1 cut(s) | 1933 |
| FspBI | CTAG | 9 cut(s) | 141, 935, 1058, 1206, 1611, 1629, 1671, 1782, 1958 |
| FspI | TGCGCA | 1 cut(s) | 1933 |
| GlaI | GCGC | 3 cut(s) | 1809, 1811, 1933 |
| GluI | GCNGC | 3 cut(s) | 891, 1307, 1419 |
| HaeIII | GGCC | 4 cut(s) | 599, 867, 1421, 1497 |
| HapII | CCGG | 2 cut(s) | 1498, 1866 |
| HgaI | GACGC | 1 cut(s) | 1510 |
| HhaI | GCGC | 3 cut(s) | 1810, 1812, 1934 |
| Hin1II | CATG | 5 cut(s) | 407, 691, 718, 781, 1286 |
| Hin6I | GCGC | 3 cut(s) | 1808, 1810, 1932 |
| HinP1I | GCGC | 3 cut(s) | 1808, 1810, 1932 |
| HincII | GTYRAC | 2 cut(s) | 33, 694 |
| HindII | GTYRAC | 2 cut(s) | 33, 694 |
| HindIII | AAGCTT | 1 cut(s) | 1839 |
| HpaII | CCGG | 2 cut(s) | 1498, 1866 |
| HphI | GGTGA | 5 cut(s) | 95, 553, 950, 1052, 1243 |
| Hpy166II | GTNNAC | 8 cut(s) | 33, 107, 694, 968, 1300, 1774, 1898, 1955 |
| Hpy188III | TCNNGA | 9 cut(s) | 263, 917, 926, 1022, 1058, 1283, 1331, 1617, 1886 |
| Hpy8I | GTNNAC | 8 cut(s) | 33, 107, 694, 968, 1300, 1774, 1898, 1955 |
| HpyAV | CCTTC | 6 cut(s) | 227, 485, 532, 1179, 1614, 1676 |
| HpyCH4III | ACNGT | 4 cut(s) | 509, 639, 972, 1198 |
| HpyCH4IV | ACGT | 2 cut(s) | 1256, 1815 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 929, 1127, 1418 |
| HpyF3I | CTNAG | 6 cut(s) | 125, 615, 951, 1426, 1434, 1555 |
| HpySE526I | ACGT | 2 cut(s) | 1256, 1815 |
| Hsp92II | CATG | 5 cut(s) | 407, 691, 718, 781, 1286 |
| HspAI | GCGC | 3 cut(s) | 1808, 1810, 1932 |
| Ksp22I | TGATCA | 1 cut(s) | 259 |
| Kzo9I | GATC | 8 cut(s) | 131, 259, 379, 516, 760, 1429, 1567, 1882 |
| LguI | GCTCTTC | 2 cut(s) | 181, 306 |
| LmnI | GCTCC | 2 cut(s) | 236, 1368 |
| Lsp1109I | GCAGC | 2 cut(s) | 902, 1318 |
| LweI | GCATC | 3 cut(s) | 4, 910, 1815 |
| MaeI | CTAG | 9 cut(s) | 141, 935, 1058, 1206, 1611, 1629, 1671, 1782, 1958 |
| MaeII | ACGT | 2 cut(s) | 1256, 1815 |
| MaeIII | GTNAC | 5 cut(s) | 83, 335, 350, 481, 1231 |
| MalI | GATC | 8 cut(s) | 133, 261, 381, 518, 762, 1431, 1569, 1884 |
| MboI | GATC | 8 cut(s) | 131, 259, 379, 516, 760, 1429, 1567, 1882 |
| MboII | GAAGA | 7 cut(s) | 198, 323, 682, 690, 722, 1391, 1884 |
| MflI | RGATCY | 2 cut(s) | 516, 1429 |
| MhlI | GDGCHC | 6 cut(s) | 241, 1169, 1290, 1492, 1533, 1900 |
| MlsI | TGGCCA | 1 cut(s) | 867 |
| MluNI | TGGCCA | 1 cut(s) | 867 |
| MlyI | GAGTC | 4 cut(s) | 80, 689, 1619, 1844 |
| MmeI | TCCRAC | 3 cut(s) | 415, 1009, 1286 |
| Mox20I | TGGCCA | 1 cut(s) | 867 |
| MscI | TGGCCA | 1 cut(s) | 867 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1072, 1927 |
| Msp20I | TGGCCA | 1 cut(s) | 867 |
| MspA1I | CMGCKG | 1 cut(s) | 1309 |
| MspI | CCGG | 2 cut(s) | 1498, 1866 |
| MspR9I | CCNGG | 4 cut(s) | 567, 1037, 1494, 1743 |
| Mva1269I | GAATGC | 1 cut(s) | 1856 |
| MvaI | CCWGG | 4 cut(s) | 567, 1037, 1494, 1743 |
| MvnI | CGCG | 2 cut(s) | 1023, 1810 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 929, 1127, 1418 |
| NdeI | CATATG | 2 cut(s) | 1052, 1087 |
| NdeII | GATC | 8 cut(s) | 131, 259, 379, 516, 760, 1429, 1567, 1882 |
| NlaIII | CATG | 5 cut(s) | 407, 691, 718, 781, 1286 |
| NlaIV | GGNNCC | 2 cut(s) | 1489, 1719 |
| NmeAIII | GCCGAG | 1 cut(s) | 1832 |
| NmuCI | GTSAC | 3 cut(s) | 83, 481, 1231 |
| NruI | TCGCGA | 1 cut(s) | 1023 |
| NsbI | TGCGCA | 1 cut(s) | 1933 |
| NspI | RCATGY | 1 cut(s) | 718 |
| PagI | TCATGA | 1 cut(s) | 1282 |
| PauI | GCGCGC | 1 cut(s) | 1808 |
| PciSI | GCTCTTC | 2 cut(s) | 181, 306 |
| PctI | GAATGC | 1 cut(s) | 1856 |
| PfeI | GAWTC | 7 cut(s) | 163, 438, 650, 955, 1032, 1251, 1327 |
| PflFI | GACNNNGTC | 1 cut(s) | 1151 |
| PkrI | GCNGC | 3 cut(s) | 892, 1308, 1420 |
| PleI | GAGTC | 4 cut(s) | 80, 689, 1619, 1844 |
| PpsI | GAGTC | 4 cut(s) | 80, 689, 1619, 1844 |
| Psp124BI | GAGCTC | 3 cut(s) | 241, 1290, 1533 |
| Psp6I | CCWGG | 4 cut(s) | 565, 1035, 1492, 1741 |
| PspGI | CCWGG | 4 cut(s) | 565, 1035, 1492, 1741 |
| PspN4I | GGNNCC | 2 cut(s) | 1489, 1719 |
| PspPI | GGNCC | 1 cut(s) | 597 |
| PstI | CTGCAG | 1 cut(s) | 1665 |
| PstNI | CAGNNNCTG | 1 cut(s) | 17 |
| PsuI | RGATCY | 2 cut(s) | 516, 1429 |
| PsyI | GACNNNGTC | 1 cut(s) | 1151 |
| PteI | GCGCGC | 1 cut(s) | 1808 |
| PvuII | CAGCTG | 1 cut(s) | 1309 |
| RruI | TCGCGA | 1 cut(s) | 1023 |
| RsaI | GTAC | 5 cut(s) | 139, 641, 882, 1115, 1709 |
| RsaNI | GTAC | 5 cut(s) | 138, 640, 881, 1114, 1708 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1072, 1927 |
| SacI | GAGCTC | 3 cut(s) | 241, 1290, 1533 |
| SapI | GCTCTTC | 2 cut(s) | 181, 306 |
| SatI | GCNGC | 3 cut(s) | 891, 1307, 1419 |
| Sau3AI | GATC | 8 cut(s) | 131, 259, 379, 516, 760, 1429, 1567, 1882 |
| Sau96I | GGNCC | 1 cut(s) | 597 |
| ScaI | AGTACT | 2 cut(s) | 139, 1709 |
| SchI | GAGTC | 4 cut(s) | 80, 689, 1619, 1844 |
| ScrFI | CCNGG | 4 cut(s) | 567, 1037, 1494, 1743 |
| SduI | GDGCHC | 6 cut(s) | 241, 1169, 1290, 1492, 1533, 1900 |
| SfaNI | GCATC | 3 cut(s) | 4, 910, 1815 |
| SfcI | CTRYAG | 2 cut(s) | 461, 1661 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1072, 1927 |
| SpeI | ACTAGT | 2 cut(s) | 140, 1670 |
| SsiI | CCGC | 2 cut(s) | 1418, 1593 |
| SspI | AATATT | 2 cut(s) | 301, 1385 |
| SspMI | CTAG | 9 cut(s) | 141, 935, 1058, 1206, 1611, 1629, 1671, 1782, 1958 |
| SstI | GAGCTC | 3 cut(s) | 241, 1290, 1533 |
| StyD4I | CCNGG | 4 cut(s) | 565, 1035, 1492, 1741 |
| StyI | CCWWGG | 2 cut(s) | 1563, 1781 |
| TaaI | ACNGT | 4 cut(s) | 509, 639, 972, 1198 |
| TaiI | ACGT | 2 cut(s) | 1259, 1818 |
| TaqI | TCGA | 3 cut(s) | 388, 958, 1008 |
| TatI | WGTACW | 4 cut(s) | 137, 639, 1113, 1707 |
| TauI | GCSGC | 1 cut(s) | 1421 |
| TfiI | GAWTC | 7 cut(s) | 163, 438, 650, 955, 1032, 1251, 1327 |
| TscAI | CASTG | 5 cut(s) | 133, 1201, 1648, 1905, 1957 |
| TseFI | GTSAC | 3 cut(s) | 83, 481, 1231 |
| TseI | GCWGC | 2 cut(s) | 890, 1306 |
| Tsp45I | GTSAC | 3 cut(s) | 83, 481, 1231 |
| TspDTI | ATGAA | 6 cut(s) | 294, 302, 673, 1271, 1460, 1833 |
| TspRI | CASTG | 5 cut(s) | 133, 1201, 1648, 1905, 1957 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1151 |
| VneI | GTGCAC | 1 cut(s) | 1896 |
| XapI | RAATTY | 4 cut(s) | 253, 1004, 1373, 1473 |
| XbaI | TCTAGA | 1 cut(s) | 1057 |
| XceI | RCATGY | 1 cut(s) | 718 |
| XmaJI | CCTAGG | 1 cut(s) | 1781 |
| XmiI | GTMKAC | 3 cut(s) | 106, 967, 1299 |
| XspI | CTAG | 9 cut(s) | 141, 935, 1058, 1206, 1611, 1629, 1671, 1782, 1958 |
| ZrmI | AGTACT | 2 cut(s) | 139, 1709 |