Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 61 - 105 | 1.5e-13 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 183 |
| AclWI | GGATC | 2 cut(s) | 191, 204 |
| AcsI | RAATTY | 3 cut(s) | 10, 79, 240 |
| AfaI | GTAC | 3 cut(s) | 66, 189, 206 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 33, 345 |
| AflIII | ACRYGT | 1 cut(s) | 266 |
| AgsI | TTSAA | 4 cut(s) | 15, 73, 356, 388 |
| AjnI | CCWGG | 1 cut(s) | 99 |
| AluBI | AGCT | 2 cut(s) | 260, 301 |
| AluI | AGCT | 2 cut(s) | 260, 301 |
| Alw21I | GWGCWC | 1 cut(s) | 303 |
| Alw26I | GTCTC | 1 cut(s) | 49 |
| AlwI | GGATC | 2 cut(s) | 191, 204 |
| AoxI | GGCC | 2 cut(s) | 329, 336 |
| ApeKI | GCWGC | 1 cut(s) | 104 |
| ApoI | RAATTY | 3 cut(s) | 10, 79, 240 |
| AsuHPI | GGTGA | 2 cut(s) | 172, 226 |
| BamHI | GGATCC | 1 cut(s) | 196 |
| BanII | GRGCYC | 1 cut(s) | 303 |
| BauI | CACGAG | 2 cut(s) | 296, 397 |
| Bbv12I | GWGCWC | 1 cut(s) | 303 |
| BbvI | GCAGC | 1 cut(s) | 91 |
| BccI | CCATC | 2 cut(s) | 271, 386 |
| BciT130I | CCWGG | 1 cut(s) | 101 |
| BciVI | GTATCC | 1 cut(s) | 107 |
| BcoDI | GTCTC | 1 cut(s) | 49 |
| BfuI | GTATCC | 1 cut(s) | 107 |
| BglII | AGATCT | 1 cut(s) | 163 |
| BisI | GCNGC | 1 cut(s) | 105 |
| BlsI | GCNGC | 1 cut(s) | 106 |
| BmcAI | AGTACT | 1 cut(s) | 189 |
| Bme1390I | CCNGG | 1 cut(s) | 101 |
| BmiI | GGNNCC | 1 cut(s) | 198 |
| BmrFI | CCNGG | 1 cut(s) | 101 |
| BsaJI | CCNNGG | 2 cut(s) | 200, 326 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 33, 345 |
| BseBI | CCWGG | 1 cut(s) | 101 |
| BseDI | CCNNGG | 2 cut(s) | 200, 326 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 33, 345 |
| BseXI | GCAGC | 1 cut(s) | 91 |
| BshFI | GGCC | 2 cut(s) | 331, 338 |
| BsiHKAI | GWGCWC | 1 cut(s) | 303 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 33, 345 |
| BsmAI | GTCTC | 1 cut(s) | 49 |
| BsnI | GGCC | 2 cut(s) | 331, 338 |
| Bsp1286I | GDGCHC | 1 cut(s) | 303 |
| Bsp143I | GATC | 3 cut(s) | 163, 196, 286 |
| BspACI | CCGC | 1 cut(s) | 183 |
| BspANI | GGCC | 2 cut(s) | 331, 338 |
| BspLI | GGNNCC | 1 cut(s) | 198 |
| BspPI | GGATC | 2 cut(s) | 191, 204 |
| BssECI | CCNNGG | 2 cut(s) | 200, 326 |
| BssMI | GATC | 3 cut(s) | 163, 196, 286 |
| BssSI | CACGAG | 2 cut(s) | 296, 397 |
| BssT1I | CCWWGG | 1 cut(s) | 326 |
| Bst2BI | CACGAG | 2 cut(s) | 296, 397 |
| Bst2UI | CCWGG | 1 cut(s) | 101 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 343 |
| BstKTI | GATC | 3 cut(s) | 166, 199, 289 |
| BstMAI | GTCTC | 1 cut(s) | 49 |
| BstMBI | GATC | 3 cut(s) | 163, 196, 286 |
| BstNI | CCWGG | 1 cut(s) | 101 |
| BstNSI | RCATGY | 2 cut(s) | 96, 270 |
| BstSCI | CCNGG | 1 cut(s) | 99 |
| BstV1I | GCAGC | 1 cut(s) | 91 |
| BstX2I | RGATCY | 2 cut(s) | 163, 196 |
| BstYI | RGATCY | 2 cut(s) | 163, 196 |
| BsuI | GTATCC | 1 cut(s) | 107 |
| BsuRI | GGCC | 2 cut(s) | 331, 338 |
| Csp6I | GTAC | 3 cut(s) | 65, 188, 205 |
| CviAII | CATG | 4 cut(s) | 93, 140, 193, 267 |
| CviQI | GTAC | 3 cut(s) | 65, 188, 205 |
| DpnI | GATC | 3 cut(s) | 165, 198, 288 |
| DpnII | GATC | 3 cut(s) | 163, 196, 286 |
| Ecl136II | GAGCTC | 1 cut(s) | 301 |
| Eco130I | CCWWGG | 1 cut(s) | 326 |
| Eco24I | GRGCYC | 1 cut(s) | 303 |
| Eco53kI | GAGCTC | 1 cut(s) | 301 |
| EcoICRI | GAGCTC | 1 cut(s) | 301 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 343 |
| EcoRI | GAATTC | 1 cut(s) | 10 |
| EcoRII | CCWGG | 1 cut(s) | 99 |
| EcoT14I | CCWWGG | 1 cut(s) | 326 |
| EcoT38I | GRGCYC | 1 cut(s) | 303 |
| ErhI | CCWWGG | 1 cut(s) | 326 |
| FaeI | CATG | 4 cut(s) | 96, 143, 196, 270 |
| FaiI | YATR | 6 cut(s) | 94, 141, 194, 219, 246, 268 |
| FatI | CATG | 4 cut(s) | 92, 139, 192, 266 |
| Fnu4HI | GCNGC | 1 cut(s) | 105 |
| FriOI | GRGCYC | 1 cut(s) | 303 |
| Fsp4HI | GCNGC | 1 cut(s) | 105 |
| GluI | GCNGC | 1 cut(s) | 105 |
| HaeIII | GGCC | 2 cut(s) | 331, 338 |
| Hin1II | CATG | 4 cut(s) | 96, 143, 196, 270 |
| HinfI | GANTC | 3 cut(s) | 57, 154, 291 |
| HphI | GGTGA | 2 cut(s) | 172, 226 |
| Hpy188I | TCNGA | 2 cut(s) | 201, 264 |
| Hpy188III | TCNNGA | 3 cut(s) | 274, 308, 399 |
| HpyCH4V | TGCA | 1 cut(s) | 125 |
| Hsp92II | CATG | 4 cut(s) | 96, 143, 196, 270 |
| Kzo9I | GATC | 3 cut(s) | 163, 196, 286 |
| LmnI | GCTCC | 1 cut(s) | 265 |
| Lsp1109I | GCAGC | 1 cut(s) | 91 |
| MalI | GATC | 3 cut(s) | 165, 198, 288 |
| MboI | GATC | 3 cut(s) | 163, 196, 286 |
| MboII | GAAGA | 5 cut(s) | 49, 124, 127, 263, 266 |
| MflI | RGATCY | 2 cut(s) | 163, 196 |
| MhlI | GDGCHC | 1 cut(s) | 303 |
| MluCI | AATT | 4 cut(s) | 10, 79, 240, 357 |
| MlyI | GAGTC | 1 cut(s) | 51 |
| MmeI | TCCRAC | 1 cut(s) | 287 |
| MnlI | CCTC | 5 cut(s) | 39, 144, 195, 342, 349 |
| MseI | TTAA | 1 cut(s) | 360 |
| MspR9I | CCNGG | 1 cut(s) | 101 |
| MvaI | CCWGG | 1 cut(s) | 101 |
| NdeII | GATC | 3 cut(s) | 163, 196, 286 |
| NlaIII | CATG | 4 cut(s) | 96, 143, 196, 270 |
| NlaIV | GGNNCC | 1 cut(s) | 198 |
| NspI | RCATGY | 2 cut(s) | 96, 270 |
| PciI | ACATGT | 1 cut(s) | 266 |
| PfeI | GAWTC | 2 cut(s) | 154, 291 |
| PkrI | GCNGC | 1 cut(s) | 106 |
| PleI | GAGTC | 1 cut(s) | 51 |
| PpsI | GAGTC | 1 cut(s) | 51 |
| PscI | ACATGT | 1 cut(s) | 266 |
| Psp124BI | GAGCTC | 1 cut(s) | 303 |
| Psp6I | CCWGG | 1 cut(s) | 99 |
| PspGI | CCWGG | 1 cut(s) | 99 |
| PspN4I | GGNNCC | 1 cut(s) | 198 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 209, 241 |
| PsuI | RGATCY | 2 cut(s) | 163, 196 |
| RsaI | GTAC | 3 cut(s) | 66, 189, 206 |
| RsaNI | GTAC | 3 cut(s) | 65, 188, 205 |
| SacI | GAGCTC | 1 cut(s) | 303 |
| SaqAI | TTAA | 1 cut(s) | 360 |
| SatI | GCNGC | 1 cut(s) | 105 |
| Sau3AI | GATC | 3 cut(s) | 163, 196, 286 |
| ScaI | AGTACT | 1 cut(s) | 189 |
| SchI | GAGTC | 1 cut(s) | 51 |
| ScrFI | CCNGG | 1 cut(s) | 101 |
| SduI | GDGCHC | 1 cut(s) | 303 |
| SetI | ASST | 4 cut(s) | 206, 262, 303, 367 |
| Sse9I | AATT | 4 cut(s) | 10, 79, 240, 357 |
| SsiI | CCGC | 1 cut(s) | 183 |
| SstI | GAGCTC | 1 cut(s) | 303 |
| StyD4I | CCNGG | 1 cut(s) | 99 |
| StyI | CCWWGG | 1 cut(s) | 326 |
| TaqI | TCGA | 2 cut(s) | 149, 289 |
| TasI | AATT | 4 cut(s) | 10, 79, 240, 357 |
| TatI | WGTACW | 1 cut(s) | 187 |
| TfiI | GAWTC | 2 cut(s) | 154, 291 |
| Tru1I | TTAA | 1 cut(s) | 360 |
| Tru9I | TTAA | 1 cut(s) | 360 |
| TseI | GCWGC | 1 cut(s) | 104 |
| TspDTI | ATGAA | 2 cut(s) | 156, 227 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 343 |
| XapI | RAATTY | 3 cut(s) | 10, 79, 240 |
| XceI | RCATGY | 2 cut(s) | 96, 270 |
| ZrmI | AGTACT | 1 cut(s) | 189 |