BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 810, 1226 |
| Acc36I | ACCTGC | 2 cut(s) | 1243, 1369 |
| AciI | CCGC | 4 cut(s) | 623, 719, 1154, 1449 |
| AclWI | GGATC | 3 cut(s) | 37, 1073, 1086 |
| AcoI | YGGCCR | 2 cut(s) | 307, 1059 |
| AcsI | RAATTY | 6 cut(s) | 136, 245, 779, 954, 1220, 1337 |
| AcuI | CTGAAG | 5 cut(s) | 123, 401, 465, 771, 1563 |
| AcvI | CACGTG | 2 cut(s) | 1487, 1565 |
| AfaI | GTAC | 2 cut(s) | 816, 1034 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 32, 283, 1292, 1437, 1476 |
| AflIII | ACRYGT | 3 cut(s) | 1011, 1044, 1564 |
| AjnI | CCWGG | 4 cut(s) | 25, 40, 249, 1475 |
| AleI | CACNNNNGTG | 1 cut(s) | 303 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 488, 520, 1031, 1063 |
| AluBI | AGCT | 9 cut(s) | 178, 601, 694, 755, 763, 946, 1151, 1556, 1617 |
| AluI | AGCT | 9 cut(s) | 178, 601, 694, 755, 763, 946, 1151, 1556, 1617 |
| Alw21I | GWGCWC | 2 cut(s) | 757, 1448 |
| Alw26I | GTCTC | 1 cut(s) | 411 |
| AlwI | GGATC | 3 cut(s) | 37, 1073, 1086 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 160 |
| AoxI | GGCC | 3 cut(s) | 307, 1059, 1550 |
| ApeKI | GCWGC | 4 cut(s) | 68, 760, 1151, 1289 |
| ApoI | RAATTY | 6 cut(s) | 136, 245, 779, 954, 1220, 1337 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 108 |
| AspS9I | GGNCC | 1 cut(s) | 1282 |
| AsuHPI | GGTGA | 3 cut(s) | 265, 461, 926 |
| AvaII | GGWCC | 1 cut(s) | 1282 |
| AxyI | CCTNAGG | 1 cut(s) | 825 |
| BalI | TGGCCA | 1 cut(s) | 1061 |
| BamHI | GGATCC | 1 cut(s) | 1078 |
| BanII | GRGCYC | 1 cut(s) | 757 |
| BbrPI | CACGTG | 2 cut(s) | 1487, 1565 |
| BbsI | GAAGAC | 1 cut(s) | 111 |
| Bbv12I | GWGCWC | 2 cut(s) | 757, 1448 |
| BbvI | GCAGC | 4 cut(s) | 55, 772, 1138, 1276 |
| BccI | CCATC | 4 cut(s) | 115, 257, 449, 1474 |
| BceAI | ACGGC | 1 cut(s) | 294 |
| BciT130I | CCWGG | 4 cut(s) | 27, 42, 251, 1477 |
| BciVI | GTATCC | 2 cut(s) | 310, 1473 |
| BclI | TGATCA | 2 cut(s) | 630, 798 |
| BcoDI | GTCTC | 1 cut(s) | 411 |
| BfaI | CTAG | 2 cut(s) | 15, 516 |
| BfmI | CTRYAG | 3 cut(s) | 152, 758, 1068 |
| BfuAI | ACCTGC | 2 cut(s) | 1243, 1369 |
| BfuI | GTATCC | 2 cut(s) | 310, 1473 |
| BisI | GCNGC | 5 cut(s) | 69, 761, 1152, 1155, 1290 |
| BlsI | GCNGC | 5 cut(s) | 70, 762, 1153, 1156, 1291 |
| BmcAI | AGTACT | 1 cut(s) | 1034 |
| Bme1390I | CCNGG | 4 cut(s) | 27, 42, 251, 1477 |
| Bme18I | GGWCC | 1 cut(s) | 1282 |
| BmgT120I | GGNCC | 1 cut(s) | 1282 |
| BmiI | GGNNCC | 2 cut(s) | 1080, 1284 |
| BmrFI | CCNGG | 4 cut(s) | 27, 42, 251, 1477 |
| BmrI | ACTGGG | 1 cut(s) | 1045 |
| BmsI | GCATC | 3 cut(s) | 916, 1417, 1549 |
| BmuI | ACTGGG | 1 cut(s) | 1045 |
| BpiI | GAAGAC | 1 cut(s) | 111 |
| BpmI | CTGGAG | 1 cut(s) | 1328 |
| BsaAI | YACGTR | 2 cut(s) | 1487, 1565 |
| BsaI | GGTCTC | 1 cut(s) | 411 |
| BsaJI | CCNNGG | 4 cut(s) | 282, 1005, 1082, 1409 |
| BsaWI | WCCGGW | 1 cut(s) | 402 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 638, 668 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 32, 283, 1292, 1437, 1476 |
| Bse1I | ACTGG | 2 cut(s) | 1040, 1345 |
| Bse21I | CCTNAGG | 1 cut(s) | 825 |
| Bse3DI | GCAATG | 1 cut(s) | 1381 |
| BseBI | CCWGG | 4 cut(s) | 27, 42, 251, 1477 |
| BseDI | CCNNGG | 4 cut(s) | 282, 1005, 1082, 1409 |
| BseGI | GGATG | 4 cut(s) | 567, 655, 1045, 1485 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 32, 283, 1292, 1437, 1476 |
| BseMI | GCAATG | 1 cut(s) | 1381 |
| BseMII | CTCAG | 5 cut(s) | 131, 193, 284, 816, 1200 |
| BseNI | ACTGG | 2 cut(s) | 1040, 1345 |
| BseRI | GAGGAG | 1 cut(s) | 33 |
| BseXI | GCAGC | 4 cut(s) | 55, 772, 1138, 1276 |
| BshFI | GGCC | 3 cut(s) | 309, 1061, 1552 |
| BsiHKAI | GWGCWC | 2 cut(s) | 757, 1448 |
| BsiSI | CCGG | 1 cut(s) | 403 |
| BslFI | GGGAC | 2 cut(s) | 211, 1268 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 32, 283, 1292, 1437, 1476 |
| BsmAI | GTCTC | 1 cut(s) | 411 |
| BsmFI | GGGAC | 2 cut(s) | 211, 1268 |
| BsmI | GAATGC | 2 cut(s) | 209, 1600 |
| BsnI | GGCC | 3 cut(s) | 309, 1061, 1552 |
| Bso31I | GGTCTC | 1 cut(s) | 411 |
| Bsp1286I | GDGCHC | 2 cut(s) | 757, 1448 |
| Bsp143I | GATC | 5 cut(s) | 29, 630, 798, 1078, 1354 |
| Bsp19I | CCATGG | 1 cut(s) | 282 |
| BspACI | CCGC | 4 cut(s) | 623, 719, 1154, 1449 |
| BspANI | GGCC | 3 cut(s) | 309, 1061, 1552 |
| BspCNI | CTCAG | 5 cut(s) | 130, 192, 285, 817, 1201 |
| BspLI | GGNNCC | 2 cut(s) | 1080, 1284 |
| BspMAI | CTGCAG | 2 cut(s) | 762, 1072 |
| BspMI | ACCTGC | 2 cut(s) | 1243, 1369 |
| BspPI | GGATC | 3 cut(s) | 37, 1073, 1086 |
| BspTNI | GGTCTC | 1 cut(s) | 411 |
| BsrDI | GCAATG | 1 cut(s) | 1381 |
| BsrI | ACTGG | 2 cut(s) | 1040, 1345 |
| BssECI | CCNNGG | 4 cut(s) | 282, 1005, 1082, 1409 |
| BssMI | GATC | 5 cut(s) | 29, 630, 798, 1078, 1354 |
| BssT1I | CCWWGG | 3 cut(s) | 282, 1005, 1409 |
| Bst2UI | CCWGG | 4 cut(s) | 27, 42, 251, 1477 |
| Bst4CI | ACNGT | 2 cut(s) | 171, 1182 |
| Bst6I | CTCTTC | 2 cut(s) | 790, 1525 |
| BstBAI | YACGTR | 2 cut(s) | 1487, 1565 |
| BstC8I | GCNNGC | 1 cut(s) | 1554 |
| BstDEI | CTNAG | 8 cut(s) | 117, 179, 293, 825, 1209, 1458, 1600, 1626 |
| BstDSI | CCRYGG | 1 cut(s) | 282 |
| BstF5I | GGATG | 4 cut(s) | 567, 655, 1045, 1485 |
| BstKTI | GATC | 5 cut(s) | 32, 633, 801, 1081, 1357 |
| BstMAI | GTCTC | 1 cut(s) | 411 |
| BstMBI | GATC | 5 cut(s) | 29, 630, 798, 1078, 1354 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 89, 1001, 1067, 1298, 1553 |
| BstNI | CCWGG | 4 cut(s) | 27, 42, 251, 1477 |
| BstNSI | RCATGY | 3 cut(s) | 466, 1015, 1048 |
| BstSCI | CCNGG | 4 cut(s) | 25, 40, 249, 1475 |
| BstSFI | CTRYAG | 3 cut(s) | 152, 758, 1068 |
| BstV1I | GCAGC | 4 cut(s) | 55, 772, 1138, 1276 |
| BstV2I | GAAGAC | 1 cut(s) | 111 |
| BstX2I | RGATCY | 2 cut(s) | 29, 1078 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 593 |
| BstYI | RGATCY | 2 cut(s) | 29, 1078 |
| Bsu36I | CCTNAGG | 1 cut(s) | 825 |
| BsuI | GTATCC | 2 cut(s) | 310, 1473 |
| BsuRI | GGCC | 3 cut(s) | 309, 1061, 1552 |
| BtgI | CCRYGG | 1 cut(s) | 282 |
| BtsCI | GGATG | 4 cut(s) | 567, 655, 1045, 1485 |
| BtsI | GCAGTG | 1 cut(s) | 1077 |
| BtsIMutI | CAGTG | 2 cut(s) | 1077, 1630 |
| BveI | ACCTGC | 2 cut(s) | 1243, 1369 |
| Cac8I | GCNNGC | 1 cut(s) | 1554 |
| CaiI | CAGNNNCTG | 1 cut(s) | 160 |
| Cfr13I | GGNCC | 1 cut(s) | 1282 |
| CseI | GACGC | 3 cut(s) | 153, 166, 970 |
| Csp6I | GTAC | 2 cut(s) | 815, 1033 |
| CviAII | CATG | 6 cut(s) | 208, 283, 463, 628, 1012, 1045 |
| CviQI | GTAC | 2 cut(s) | 815, 1033 |
| DdeI | CTNAG | 8 cut(s) | 117, 179, 293, 825, 1209, 1458, 1600, 1626 |
| DpnI | GATC | 5 cut(s) | 31, 632, 800, 1080, 1356 |
| DpnII | GATC | 5 cut(s) | 29, 630, 798, 1078, 1354 |
| EaeI | YGGCCR | 2 cut(s) | 307, 1059 |
| Eam1104I | CTCTTC | 2 cut(s) | 790, 1525 |
| EarI | CTCTTC | 2 cut(s) | 790, 1525 |
| Ecl136II | GAGCTC | 1 cut(s) | 755 |
| Eco130I | CCWWGG | 3 cut(s) | 282, 1005, 1409 |
| Eco24I | GRGCYC | 1 cut(s) | 757 |
| Eco31I | GGTCTC | 1 cut(s) | 411 |
| Eco32I | GATATC | 2 cut(s) | 504, 673 |
| Eco47I | GGWCC | 1 cut(s) | 1282 |
| Eco53kI | GAGCTC | 1 cut(s) | 755 |
| Eco57I | CTGAAG | 5 cut(s) | 123, 401, 465, 771, 1563 |
| Eco72I | CACGTG | 2 cut(s) | 1487, 1565 |
| Eco81I | CCTNAGG | 1 cut(s) | 825 |
| EcoICRI | GAGCTC | 1 cut(s) | 755 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1282 |
| EcoRI | GAATTC | 2 cut(s) | 779, 1337 |
| EcoRII | CCWGG | 4 cut(s) | 25, 40, 249, 1475 |
| EcoRV | GATATC | 2 cut(s) | 504, 673 |
| EcoT14I | CCWWGG | 3 cut(s) | 282, 1005, 1409 |
| EcoT22I | ATGCAT | 1 cut(s) | 209 |
| EcoT38I | GRGCYC | 1 cut(s) | 757 |
| ErhI | CCWWGG | 3 cut(s) | 282, 1005, 1409 |
| FaeI | CATG | 6 cut(s) | 211, 286, 466, 631, 1015, 1048 |
| FaqI | GGGAC | 2 cut(s) | 211, 1268 |
| FatI | CATG | 6 cut(s) | 207, 282, 462, 627, 1011, 1044 |
| FbaI | TGATCA | 2 cut(s) | 630, 798 |
| Fnu4HI | GCNGC | 5 cut(s) | 69, 761, 1152, 1155, 1290 |
| FokI | GGATG | 4 cut(s) | 554, 662, 1052, 1492 |
| FriOI | GRGCYC | 1 cut(s) | 757 |
| Fsp4HI | GCNGC | 5 cut(s) | 69, 761, 1152, 1155, 1290 |
| FspBI | CTAG | 2 cut(s) | 15, 516 |
| GluI | GCNGC | 5 cut(s) | 69, 761, 1152, 1155, 1290 |
| GsuI | CTGGAG | 1 cut(s) | 1328 |
| HaeIII | GGCC | 3 cut(s) | 309, 1061, 1552 |
| HapII | CCGG | 1 cut(s) | 403 |
| HgaI | GACGC | 3 cut(s) | 153, 166, 970 |
| Hin1II | CATG | 6 cut(s) | 211, 286, 466, 631, 1015, 1048 |
| HincII | GTYRAC | 1 cut(s) | 865 |
| HindII | GTYRAC | 1 cut(s) | 865 |
| HpaII | CCGG | 1 cut(s) | 403 |
| HphI | GGTGA | 3 cut(s) | 265, 461, 926 |
| Hpy166II | GTNNAC | 4 cut(s) | 217, 256, 865, 1232 |
| Hpy8I | GTNNAC | 4 cut(s) | 217, 256, 865, 1232 |
| HpyAV | CCTTC | 6 cut(s) | 184, 261, 440, 839, 1130, 1268 |
| HpyCH4III | ACNGT | 2 cut(s) | 171, 1182 |
| HpyCH4IV | ACGT | 2 cut(s) | 1486, 1564 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 89, 1001, 1067, 1298, 1553 |
| HpyF3I | CTNAG | 8 cut(s) | 117, 179, 293, 825, 1209, 1458, 1600, 1626 |
| HpySE526I | ACGT | 2 cut(s) | 1486, 1564 |
| Hsp92II | CATG | 6 cut(s) | 211, 286, 466, 631, 1015, 1048 |
| Ksp22I | TGATCA | 2 cut(s) | 630, 798 |
| Kzo9I | GATC | 5 cut(s) | 29, 630, 798, 1078, 1354 |
| LmnI | GCTCC | 2 cut(s) | 752, 1443 |
| Lsp1109I | GCAGC | 4 cut(s) | 55, 772, 1138, 1276 |
| LweI | GCATC | 3 cut(s) | 916, 1417, 1549 |
| MaeI | CTAG | 2 cut(s) | 15, 516 |
| MaeII | ACGT | 2 cut(s) | 1486, 1564 |
| MaeIII | GTNAC | 1 cut(s) | 563 |
| MalI | GATC | 5 cut(s) | 31, 632, 800, 1080, 1356 |
| MboI | GATC | 5 cut(s) | 29, 630, 798, 1078, 1354 |
| MflI | RGATCY | 2 cut(s) | 29, 1078 |
| MhlI | GDGCHC | 2 cut(s) | 757, 1448 |
| MlsI | TGGCCA | 1 cut(s) | 1061 |
| MluNI | TGGCCA | 1 cut(s) | 1061 |
| MlyI | GAGTC | 3 cut(s) | 434, 971, 1423 |
| MmeI | TCCRAC | 1 cut(s) | 610 |
| Mox20I | TGGCCA | 1 cut(s) | 1061 |
| Mph1103I | ATGCAT | 1 cut(s) | 209 |
| MroXI | GAANNNNTTC | 1 cut(s) | 108 |
| MscI | TGGCCA | 1 cut(s) | 1061 |
| MseI | TTAA | 8 cut(s) | 324, 396, 468, 549, 666, 884, 1089, 1349 |
| MslI | CAYNNNNRTG | 2 cut(s) | 303, 939 |
| Msp20I | TGGCCA | 1 cut(s) | 1061 |
| MspA1I | CMGCKG | 4 cut(s) | 601, 721, 1451, 1556 |
| MspI | CCGG | 1 cut(s) | 403 |
| MspR9I | CCNGG | 4 cut(s) | 27, 42, 251, 1477 |
| Mva1269I | GAATGC | 2 cut(s) | 209, 1600 |
| MvaI | CCWGG | 4 cut(s) | 27, 42, 251, 1477 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 89, 1001, 1067, 1298, 1553 |
| NcoI | CCATGG | 1 cut(s) | 282 |
| NdeII | GATC | 5 cut(s) | 29, 630, 798, 1078, 1354 |
| NlaIII | CATG | 6 cut(s) | 211, 286, 466, 631, 1015, 1048 |
| NlaIV | GGNNCC | 2 cut(s) | 1080, 1284 |
| NmuCI | GTSAC | 1 cut(s) | 563 |
| NsiI | ATGCAT | 1 cut(s) | 209 |
| NspI | RCATGY | 3 cut(s) | 466, 1015, 1048 |
| OliI | CACNNNNGTG | 1 cut(s) | 303 |
| PciI | ACATGT | 2 cut(s) | 1011, 1044 |
| PctI | GAATGC | 2 cut(s) | 209, 1600 |
| PdmI | GAANNNNTTC | 1 cut(s) | 108 |
| PfeI | GAWTC | 8 cut(s) | 530, 539, 580, 1198, 1244, 1250, 1256, 1268 |
| PfoI | TCCNGGA | 2 cut(s) | 25, 1475 |
| PkrI | GCNGC | 5 cut(s) | 70, 762, 1153, 1156, 1291 |
| PleI | GAGTC | 3 cut(s) | 433, 971, 1422 |
| PmaCI | CACGTG | 2 cut(s) | 1487, 1565 |
| PmlI | CACGTG | 2 cut(s) | 1487, 1565 |
| PpsI | GAGTC | 3 cut(s) | 433, 971, 1422 |
| Ppu21I | YACGTR | 2 cut(s) | 1487, 1565 |
| PpuMI | RGGWCCY | 1 cut(s) | 1282 |
| PscI | ACATGT | 2 cut(s) | 1011, 1044 |
| PsiI | TTATAA | 2 cut(s) | 810, 1226 |
| Psp124BI | GAGCTC | 1 cut(s) | 757 |
| Psp5II | RGGWCCY | 1 cut(s) | 1282 |
| Psp6I | CCWGG | 4 cut(s) | 25, 40, 249, 1475 |
| PspCI | CACGTG | 2 cut(s) | 1487, 1565 |
| PspGI | CCWGG | 4 cut(s) | 25, 40, 249, 1475 |
| PspN4I | GGNNCC | 2 cut(s) | 1080, 1284 |
| PspPI | GGNCC | 1 cut(s) | 1282 |
| PspPPI | RGGWCCY | 1 cut(s) | 1282 |
| PstI | CTGCAG | 2 cut(s) | 762, 1072 |
| PstNI | CAGNNNCTG | 1 cut(s) | 160 |
| PsuI | RGATCY | 2 cut(s) | 29, 1078 |
| PvuII | CAGCTG | 2 cut(s) | 601, 1556 |
| RsaI | GTAC | 2 cut(s) | 816, 1034 |
| RsaNI | GTAC | 2 cut(s) | 815, 1033 |
| RseI | CAYNNNNRTG | 2 cut(s) | 303, 939 |
| SacI | GAGCTC | 1 cut(s) | 757 |
| SaqAI | TTAA | 8 cut(s) | 324, 396, 468, 549, 666, 884, 1089, 1349 |
| SatI | GCNGC | 5 cut(s) | 69, 761, 1152, 1155, 1290 |
| Sau3AI | GATC | 5 cut(s) | 29, 630, 798, 1078, 1354 |
| Sau96I | GGNCC | 1 cut(s) | 1282 |
| ScaI | AGTACT | 1 cut(s) | 1034 |
| SchI | GAGTC | 3 cut(s) | 434, 971, 1423 |
| ScrFI | CCNGG | 4 cut(s) | 27, 42, 251, 1477 |
| SduI | GDGCHC | 2 cut(s) | 757, 1448 |
| SfaNI | GCATC | 3 cut(s) | 916, 1417, 1549 |
| SfcI | CTRYAG | 3 cut(s) | 152, 758, 1068 |
| SinI | GGWCC | 1 cut(s) | 1282 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 303, 939 |
| SsiI | CCGC | 4 cut(s) | 623, 719, 1154, 1449 |
| SspI | AATATT | 1 cut(s) | 922 |
| SspMI | CTAG | 2 cut(s) | 15, 516 |
| SstI | GAGCTC | 1 cut(s) | 757 |
| StyD4I | CCNGG | 4 cut(s) | 25, 40, 249, 1475 |
| StyI | CCWWGG | 3 cut(s) | 282, 1005, 1409 |
| TaaI | ACNGT | 2 cut(s) | 171, 1182 |
| TaiI | ACGT | 2 cut(s) | 1489, 1567 |
| TaqI | TCGA | 2 cut(s) | 1425, 1612 |
| TatI | WGTACW | 1 cut(s) | 1032 |
| TauI | GCSGC | 1 cut(s) | 1157 |
| TfiI | GAWTC | 8 cut(s) | 530, 539, 580, 1198, 1244, 1250, 1256, 1268 |
| Tru1I | TTAA | 8 cut(s) | 324, 396, 468, 549, 666, 884, 1089, 1349 |
| Tru9I | TTAA | 8 cut(s) | 324, 396, 468, 549, 666, 884, 1089, 1349 |
| TscAI | CASTG | 1 cut(s) | 1077 |
| TseFI | GTSAC | 1 cut(s) | 563 |
| TseI | GCWGC | 4 cut(s) | 68, 760, 1151, 1289 |
| Tsp45I | GTSAC | 1 cut(s) | 563 |
| TspRI | CASTG | 1 cut(s) | 1077 |
| VpaK11BI | GGWCC | 1 cut(s) | 1282 |
| XapI | RAATTY | 6 cut(s) | 136, 245, 779, 954, 1220, 1337 |
| XceI | RCATGY | 3 cut(s) | 466, 1015, 1048 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 247 |
| XmnI | GAANNNNTTC | 1 cut(s) | 108 |
| XspI | CTAG | 2 cut(s) | 15, 516 |
| ZrmI | AGTACT | 1 cut(s) | 1034 |
| Zsp2I | ATGCAT | 1 cut(s) | 209 |