Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-BED | PF02892 | 72 - 118 | 5.7e-06 | BED zinc finger |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 548 |
| AclWI | GGATC | 1 cut(s) | 228 |
| AcsI | RAATTY | 2 cut(s) | 172, 541 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 104 |
| AgeI | ACCGGT | 2 cut(s) | 21, 31 |
| AgsI | TTSAA | 1 cut(s) | 188 |
| AjnI | CCWGG | 2 cut(s) | 215, 529 |
| AluBI | AGCT | 3 cut(s) | 135, 143, 476 |
| AluI | AGCT | 3 cut(s) | 135, 143, 476 |
| Alw26I | GTCTC | 1 cut(s) | 320 |
| AlwI | GGATC | 1 cut(s) | 228 |
| AoxI | GGCC | 2 cut(s) | 13, 527 |
| ApeKI | GCWGC | 4 cut(s) | 127, 155, 158, 161 |
| ApoI | RAATTY | 2 cut(s) | 172, 541 |
| AsiGI | ACCGGT | 2 cut(s) | 21, 31 |
| AspS9I | GGNCC | 4 cut(s) | 14, 47, 382, 527 |
| AsuHPI | GGTGA | 1 cut(s) | 46 |
| AvaII | GGWCC | 2 cut(s) | 47, 382 |
| BbvI | GCAGC | 4 cut(s) | 114, 142, 145, 148 |
| BccI | CCATC | 5 cut(s) | 58, 67, 242, 481, 518 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 241, 275 |
| BciT130I | CCWGG | 2 cut(s) | 217, 531 |
| BcoDI | GTCTC | 1 cut(s) | 320 |
| BfaI | CTAG | 1 cut(s) | 483 |
| BisI | GCNGC | 4 cut(s) | 128, 156, 159, 162 |
| BlsI | GCNGC | 4 cut(s) | 129, 157, 160, 163 |
| Bme1390I | CCNGG | 2 cut(s) | 217, 531 |
| Bme18I | GGWCC | 2 cut(s) | 47, 382 |
| BmgT120I | GGNCC | 4 cut(s) | 14, 47, 382, 527 |
| BmiI | GGNNCC | 3 cut(s) | 109, 383, 384 |
| BmrFI | CCNGG | 2 cut(s) | 217, 531 |
| BmsI | GCATC | 3 cut(s) | 110, 142, 219 |
| BpuEI | CTTGAG | 1 cut(s) | 123 |
| BsaJI | CCNNGG | 5 cut(s) | 73, 111, 180, 216, 530 |
| BsaWI | WCCGGW | 2 cut(s) | 21, 31 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 79, 109 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 104 |
| Bse118I | RCCGGY | 3 cut(s) | 11, 21, 31 |
| Bse3DI | GCAATG | 1 cut(s) | 358 |
| BseBI | CCWGG | 2 cut(s) | 217, 531 |
| BseDI | CCNNGG | 5 cut(s) | 73, 111, 180, 216, 530 |
| BseGI | GGATG | 5 cut(s) | 50, 311, 466, 492, 505 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 104 |
| BseMI | GCAATG | 1 cut(s) | 358 |
| BseXI | GCAGC | 4 cut(s) | 114, 142, 145, 148 |
| BsgI | GTGCAG | 1 cut(s) | 113 |
| BshFI | GGCC | 2 cut(s) | 15, 529 |
| BshTI | ACCGGT | 2 cut(s) | 21, 31 |
| BsiSI | CCGG | 3 cut(s) | 12, 22, 32 |
| BslFI | GGGAC | 1 cut(s) | 368 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 104 |
| BsmAI | GTCTC | 1 cut(s) | 320 |
| BsmFI | GGGAC | 1 cut(s) | 368 |
| BsnI | GGCC | 2 cut(s) | 15, 529 |
| Bsp143I | GATC | 2 cut(s) | 220, 317 |
| Bsp19I | CCATGG | 2 cut(s) | 73, 111 |
| BspANI | GGCC | 2 cut(s) | 15, 529 |
| BspLI | GGNNCC | 3 cut(s) | 109, 383, 384 |
| BspPI | GGATC | 1 cut(s) | 228 |
| BsrDI | GCAATG | 1 cut(s) | 358 |
| BsrFI | RCCGGY | 3 cut(s) | 11, 21, 31 |
| BssAI | RCCGGY | 3 cut(s) | 11, 21, 31 |
| BssECI | CCNNGG | 5 cut(s) | 73, 111, 180, 216, 530 |
| BssMI | GATC | 2 cut(s) | 220, 317 |
| BssT1I | CCWWGG | 2 cut(s) | 73, 111 |
| Bst2UI | CCWGG | 2 cut(s) | 217, 531 |
| Bst4CI | ACNGT | 1 cut(s) | 290 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 127 |
| BstDEI | CTNAG | 1 cut(s) | 377 |
| BstDSI | CCRYGG | 2 cut(s) | 73, 111 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 102 |
| BstF5I | GGATG | 5 cut(s) | 50, 311, 466, 492, 505 |
| BstKTI | GATC | 2 cut(s) | 223, 320 |
| BstMAI | GTCTC | 1 cut(s) | 320 |
| BstMBI | GATC | 2 cut(s) | 220, 317 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 127, 161 |
| BstNI | CCWGG | 2 cut(s) | 217, 531 |
| BstSCI | CCNGG | 2 cut(s) | 215, 529 |
| BstV1I | GCAGC | 4 cut(s) | 114, 142, 145, 148 |
| BsuRI | GGCC | 2 cut(s) | 15, 529 |
| BtgI | CCRYGG | 2 cut(s) | 73, 111 |
| BtgZI | GCGATG | 1 cut(s) | 196 |
| BtsCI | GGATG | 5 cut(s) | 50, 311, 466, 492, 505 |
| BtsIMutI | CAGTG | 1 cut(s) | 286 |
| Cfr10I | RCCGGY | 3 cut(s) | 11, 21, 31 |
| Cfr13I | GGNCC | 4 cut(s) | 14, 47, 382, 527 |
| CseI | GACGC | 1 cut(s) | 153 |
| CspAI | ACCGGT | 2 cut(s) | 21, 31 |
| CviAII | CATG | 3 cut(s) | 74, 112, 337 |
| CviJI | RGCY | 8 cut(s) | 15, 127, 135, 143, 268, 476, 529, 562 |
| CviKI_1 | RGCY | 8 cut(s) | 15, 127, 135, 143, 268, 476, 529, 562 |
| DdeI | CTNAG | 1 cut(s) | 377 |
| DpnI | GATC | 2 cut(s) | 222, 319 |
| DpnII | GATC | 2 cut(s) | 220, 317 |
| DraI | TTTAAA | 2 cut(s) | 28, 538 |
| Eco130I | CCWWGG | 2 cut(s) | 73, 111 |
| Eco47I | GGWCC | 2 cut(s) | 47, 382 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 102 |
| EcoO109I | RGGNCCY | 1 cut(s) | 382 |
| EcoRI | GAATTC | 1 cut(s) | 172 |
| EcoRII | CCWGG | 2 cut(s) | 215, 529 |
| EcoT14I | CCWWGG | 2 cut(s) | 73, 111 |
| ErhI | CCWWGG | 2 cut(s) | 73, 111 |
| FaeI | CATG | 3 cut(s) | 77, 115, 340 |
| FaiI | YATR | 8 cut(s) | 75, 113, 303, 338, 453, 466, 548, 565 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 332, 364 |
| FaqI | GGGAC | 1 cut(s) | 368 |
| FatI | CATG | 3 cut(s) | 73, 111, 336 |
| Fnu4HI | GCNGC | 4 cut(s) | 128, 156, 159, 162 |
| FokI | GGATG | 5 cut(s) | 37, 318, 473, 499, 512 |
| Fsp4HI | GCNGC | 4 cut(s) | 128, 156, 159, 162 |
| FspBI | CTAG | 1 cut(s) | 483 |
| GluI | GCNGC | 4 cut(s) | 128, 156, 159, 162 |
| HaeIII | GGCC | 2 cut(s) | 15, 529 |
| HapII | CCGG | 3 cut(s) | 12, 22, 32 |
| HgaI | GACGC | 1 cut(s) | 153 |
| Hin1II | CATG | 3 cut(s) | 77, 115, 340 |
| HinfI | GANTC | 5 cut(s) | 4, 202, 241, 343, 413 |
| HpaII | CCGG | 3 cut(s) | 12, 22, 32 |
| HphI | GGTGA | 1 cut(s) | 46 |
| Hpy166II | GTNNAC | 1 cut(s) | 374 |
| Hpy188III | TCNNGA | 1 cut(s) | 245 |
| Hpy8I | GTNNAC | 1 cut(s) | 374 |
| HpyCH4III | ACNGT | 1 cut(s) | 290 |
| HpyCH4V | TGCA | 4 cut(s) | 101, 130, 282, 295 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 127, 161 |
| HpyF3I | CTNAG | 1 cut(s) | 377 |
| Hsp92II | CATG | 3 cut(s) | 77, 115, 340 |
| KflI | GGGWCCC | 1 cut(s) | 382 |
| Kzo9I | GATC | 2 cut(s) | 220, 317 |
| LmnI | GCTCC | 1 cut(s) | 148 |
| Lsp1109I | GCAGC | 4 cut(s) | 114, 142, 145, 148 |
| LweI | GCATC | 3 cut(s) | 110, 142, 219 |
| MaeI | CTAG | 1 cut(s) | 483 |
| MaeIII | GTNAC | 1 cut(s) | 332 |
| MalI | GATC | 2 cut(s) | 222, 319 |
| MboI | GATC | 2 cut(s) | 220, 317 |
| MboII | GAAGA | 4 cut(s) | 168, 211, 250, 352 |
| MluCI | AATT | 3 cut(s) | 172, 503, 541 |
| MlyI | GAGTC | 1 cut(s) | 422 |
| MnlI | CCTC | 4 cut(s) | 189, 190, 267, 451 |
| MseI | TTAA | 2 cut(s) | 27, 537 |
| MspI | CCGG | 3 cut(s) | 12, 22, 32 |
| MspR9I | CCNGG | 2 cut(s) | 217, 531 |
| MssI | GTTTAAAC | 1 cut(s) | 28 |
| MvaI | CCWGG | 2 cut(s) | 217, 531 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 127, 161 |
| NcoI | CCATGG | 2 cut(s) | 73, 111 |
| NdeII | GATC | 2 cut(s) | 220, 317 |
| NlaIII | CATG | 3 cut(s) | 77, 115, 340 |
| NlaIV | GGNNCC | 3 cut(s) | 109, 383, 384 |
| NmeAIII | GCCGAG | 1 cut(s) | 294 |
| PfeI | GAWTC | 3 cut(s) | 202, 241, 343 |
| PinAI | ACCGGT | 2 cut(s) | 21, 31 |
| PkrI | GCNGC | 4 cut(s) | 129, 157, 160, 163 |
| PleI | GAGTC | 1 cut(s) | 421 |
| PmeI | GTTTAAAC | 1 cut(s) | 28 |
| PpsI | GAGTC | 1 cut(s) | 421 |
| PpuMI | RGGWCCY | 1 cut(s) | 382 |
| PsiI | TTATAA | 1 cut(s) | 548 |
| Psp5II | RGGWCCY | 1 cut(s) | 382 |
| Psp6I | CCWGG | 2 cut(s) | 215, 529 |
| PspGI | CCWGG | 2 cut(s) | 215, 529 |
| PspN4I | GGNNCC | 3 cut(s) | 109, 383, 384 |
| PspPI | GGNCC | 4 cut(s) | 14, 47, 382, 527 |
| PspPPI | RGGWCCY | 1 cut(s) | 382 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 70, 102 |
| SaqAI | TTAA | 2 cut(s) | 27, 537 |
| SatI | GCNGC | 4 cut(s) | 128, 156, 159, 162 |
| Sau3AI | GATC | 2 cut(s) | 220, 317 |
| Sau96I | GGNCC | 4 cut(s) | 14, 47, 382, 527 |
| SchI | GAGTC | 1 cut(s) | 422 |
| ScrFI | CCNGG | 2 cut(s) | 217, 531 |
| SetI | ASST | 9 cut(s) | 49, 109, 137, 145, 151, 259, 302, 473, 478 |
| SfaNI | GCATC | 3 cut(s) | 110, 142, 219 |
| SinI | GGWCC | 2 cut(s) | 47, 382 |
| SmlI | CTYRAG | 1 cut(s) | 138 |
| SmoI | CTYRAG | 1 cut(s) | 138 |
| Sse9I | AATT | 3 cut(s) | 172, 503, 541 |
| SspMI | CTAG | 1 cut(s) | 483 |
| StyD4I | CCNGG | 2 cut(s) | 215, 529 |
| StyI | CCWWGG | 2 cut(s) | 73, 111 |
| TaaI | ACNGT | 1 cut(s) | 290 |
| TaqI | TCGA | 2 cut(s) | 320, 420 |
| TasI | AATT | 3 cut(s) | 172, 503, 541 |
| TfiI | GAWTC | 3 cut(s) | 202, 241, 343 |
| Tru1I | TTAA | 2 cut(s) | 27, 537 |
| Tru9I | TTAA | 2 cut(s) | 27, 537 |
| TscAI | CASTG | 1 cut(s) | 293 |
| TseI | GCWGC | 4 cut(s) | 127, 155, 158, 161 |
| TspDTI | ATGAA | 3 cut(s) | 251, 353, 516 |
| TspRI | CASTG | 1 cut(s) | 293 |
| VpaK11BI | GGWCC | 2 cut(s) | 47, 382 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 102 |
| XapI | RAATTY | 2 cut(s) | 172, 541 |
| XspI | CTAG | 1 cut(s) | 483 |