Zinc finger BED domain-containing protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 514 |
| Acc16I | TGCGCA | 1 cut(s) | 918 |
| Acc36I | ACCTGC | 1 cut(s) | 514 |
| AccB1I | GGYRCC | 2 cut(s) | 362, 449 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 640 |
| AccII | CGCG | 2 cut(s) | 87, 955 |
| AciI | CCGC | 9 cut(s) | 27, 85, 130, 224, 300, 505, 547, 729, 1112 |
| AclWI | GGATC | 4 cut(s) | 270, 1289, 1302, 1406 |
| AcoI | YGGCCR | 1 cut(s) | 837 |
| AcyI | GRCGYC | 3 cut(s) | 82, 363, 450 |
| AfaI | GTAC | 1 cut(s) | 567 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 575, 640, 1425 |
| AgeI | ACCGGT | 1 cut(s) | 191 |
| AjnI | CCWGG | 3 cut(s) | 75, 584, 651 |
| AleI | CACNNNNGTG | 1 cut(s) | 963 |
| Alw21I | GWGCWC | 1 cut(s) | 696 |
| Alw26I | GTCTC | 4 cut(s) | 313, 368, 400, 455 |
| Alw44I | GTGCAC | 1 cut(s) | 692 |
| AlwI | GGATC | 4 cut(s) | 270, 1289, 1302, 1406 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 544 |
| Ama87I | CYCGRG | 1 cut(s) | 1284 |
| AoxI | GGCC | 4 cut(s) | 540, 582, 630, 837 |
| ApaI | GGGCCC | 1 cut(s) | 634 |
| ApaLI | GTGCAC | 1 cut(s) | 692 |
| ApeKI | GCWGC | 5 cut(s) | 215, 532, 976, 1130, 1133 |
| AsiGI | ACCGGT | 1 cut(s) | 191 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1476 |
| AspLEI | GCGC | 4 cut(s) | 365, 452, 919, 955 |
| AspS9I | GGNCC | 4 cut(s) | 541, 582, 630, 631 |
| AsuC2I | CCSGG | 3 cut(s) | 349, 436, 491 |
| AvaI | CYCGRG | 1 cut(s) | 1284 |
| BaeGI | GKGCMC | 2 cut(s) | 634, 696 |
| BalI | TGGCCA | 1 cut(s) | 839 |
| BamHI | GGATCC | 1 cut(s) | 1294 |
| BanI | GGYRCC | 2 cut(s) | 362, 449 |
| BanII | GRGCYC | 3 cut(s) | 604, 634, 647 |
| Bbv12I | GWGCWC | 1 cut(s) | 696 |
| BbvCI | CCTCAGC | 1 cut(s) | 164 |
| BbvI | GCAGC | 5 cut(s) | 202, 544, 988, 1120, 1142 |
| BccI | CCATC | 3 cut(s) | 283, 785, 938 |
| BceAI | ACGGC | 3 cut(s) | 376, 463, 518 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 52, 86 |
| BciT130I | CCWGG | 3 cut(s) | 77, 586, 653 |
| BcnI | CCSGG | 3 cut(s) | 349, 436, 491 |
| BcoDI | GTCTC | 4 cut(s) | 313, 368, 400, 455 |
| BfaI | CTAG | 8 cut(s) | 138, 284, 371, 458, 615, 734, 1494, 1531 |
| BfmI | CTRYAG | 2 cut(s) | 556, 1125 |
| BfoI | RGCGCY | 2 cut(s) | 366, 453 |
| BfuAI | ACCTGC | 1 cut(s) | 514 |
| BglII | AGATCT | 1 cut(s) | 134 |
| BisI | GCNGC | 8 cut(s) | 85, 216, 506, 533, 548, 977, 1131, 1134 |
| BlsI | GCNGC | 8 cut(s) | 86, 217, 507, 534, 549, 978, 1132, 1135 |
| Bme1390I | CCNGG | 6 cut(s) | 77, 349, 436, 491, 586, 653 |
| BmeT110I | CYCGRG | 1 cut(s) | 1284 |
| BmgT120I | GGNCC | 4 cut(s) | 541, 582, 630, 631 |
| BmiI | GGNNCC | 4 cut(s) | 364, 451, 632, 1296 |
| BmrFI | CCNGG | 6 cut(s) | 77, 349, 436, 491, 586, 653 |
| BmrI | ACTGGG | 1 cut(s) | 1056 |
| BmsI | GCATC | 3 cut(s) | 904, 1028, 1406 |
| BmuI | ACTGGG | 1 cut(s) | 1056 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1498, 1530 |
| BpmI | CTGGAG | 1 cut(s) | 773 |
| Bpu10I | CCTNAGC | 1 cut(s) | 164 |
| BpuMI | CCSGG | 3 cut(s) | 349, 436, 491 |
| BsaHI | GRCGYC | 3 cut(s) | 82, 363, 450 |
| BsaJI | CCNNGG | 2 cut(s) | 76, 840 |
| BsaWI | WCCGGW | 4 cut(s) | 191, 315, 402, 1058 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 794, 824 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 575, 640, 1425 |
| Bse118I | RCCGGY | 1 cut(s) | 191 |
| Bse1I | ACTGG | 1 cut(s) | 1051 |
| BseBI | CCWGG | 3 cut(s) | 77, 586, 653 |
| BseDI | CCNNGG | 2 cut(s) | 76, 840 |
| BseGI | GGATG | 3 cut(s) | 568, 949, 1169 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 575, 640, 1425 |
| BseMII | CTCAG | 2 cut(s) | 155, 1496 |
| BseNI | ACTGG | 1 cut(s) | 1051 |
| BseRI | GAGGAG | 3 cut(s) | 54, 119, 122 |
| BseSI | GKGCMC | 2 cut(s) | 634, 696 |
| BseXI | GCAGC | 5 cut(s) | 202, 544, 988, 1120, 1142 |
| BseYI | CCCAGC | 7 cut(s) | 178, 332, 387, 419, 474, 574, 597 |
| BsgI | GTGCAG | 2 cut(s) | 551, 1014 |
| Bsh1236I | CGCG | 2 cut(s) | 87, 955 |
| BshFI | GGCC | 4 cut(s) | 542, 584, 632, 839 |
| BshNI | GGYRCC | 2 cut(s) | 362, 449 |
| BshTI | ACCGGT | 1 cut(s) | 191 |
| BsiHKAI | GWGCWC | 1 cut(s) | 696 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1284 |
| BsiSI | CCGG | 7 cut(s) | 192, 316, 348, 403, 435, 490, 1059 |
| BslFI | GGGAC | 2 cut(s) | 93, 1177 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 575, 640, 1425 |
| BsmAI | GTCTC | 4 cut(s) | 313, 368, 400, 455 |
| BsmBI | CGTCTC | 4 cut(s) | 313, 368, 400, 455 |
| BsmFI | GGGAC | 2 cut(s) | 93, 1177 |
| BsnI | GGCC | 4 cut(s) | 542, 584, 632, 839 |
| BsoBI | CYCGRG | 1 cut(s) | 1284 |
| Bsp120I | GGGCCC | 1 cut(s) | 630 |
| Bsp1286I | GDGCHC | 4 cut(s) | 604, 634, 647, 696 |
| Bsp143I | GATC | 7 cut(s) | 134, 275, 280, 367, 454, 1294, 1411 |
| Bsp19I | CCATGG | 1 cut(s) | 840 |
| BspACI | CCGC | 9 cut(s) | 27, 85, 130, 224, 300, 505, 547, 729, 1112 |
| BspANI | GGCC | 4 cut(s) | 542, 584, 632, 839 |
| BspCNI | CTCAG | 2 cut(s) | 156, 1497 |
| BspFNI | CGCG | 2 cut(s) | 87, 955 |
| BspLI | GGNNCC | 4 cut(s) | 364, 451, 632, 1296 |
| BspMAI | CTGCAG | 1 cut(s) | 560 |
| BspMI | ACCTGC | 1 cut(s) | 514 |
| BspPI | GGATC | 4 cut(s) | 270, 1289, 1302, 1406 |
| BspQI | GCTCTTC | 1 cut(s) | 1306 |
| BspT107I | GGYRCC | 2 cut(s) | 362, 449 |
| BsrFI | RCCGGY | 1 cut(s) | 191 |
| BsrI | ACTGG | 1 cut(s) | 1051 |
| BssAI | RCCGGY | 1 cut(s) | 191 |
| BssECI | CCNNGG | 2 cut(s) | 76, 840 |
| BssMI | GATC | 7 cut(s) | 134, 275, 280, 367, 454, 1294, 1411 |
| BssNI | GRCGYC | 3 cut(s) | 82, 363, 450 |
| BssT1I | CCWWGG | 1 cut(s) | 840 |
| Bst2UI | CCWGG | 3 cut(s) | 77, 586, 653 |
| Bst4CI | ACNGT | 4 cut(s) | 124, 821, 910, 1350 |
| Bst6I | CTCTTC | 1 cut(s) | 1306 |
| BstACI | GRCGYC | 3 cut(s) | 82, 363, 450 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 529, 992 |
| BstC8I | GCNNGC | 2 cut(s) | 915, 988 |
| BstDEI | CTNAG | 5 cut(s) | 164, 961, 1002, 1227, 1505 |
| BstDSI | CCRYGG | 1 cut(s) | 840 |
| BstEII | GGTNACC | 6 cut(s) | 50, 311, 343, 398, 430, 485 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1423 |
| BstF5I | GGATG | 3 cut(s) | 568, 949, 1169 |
| BstFNI | CGCG | 2 cut(s) | 87, 955 |
| BstH2I | RGCGCY | 2 cut(s) | 366, 453 |
| BstHHI | GCGC | 4 cut(s) | 365, 452, 919, 955 |
| BstKTI | GATC | 7 cut(s) | 137, 278, 283, 370, 457, 1297, 1414 |
| BstMAI | GTCTC | 4 cut(s) | 313, 368, 400, 455 |
| BstMBI | GATC | 7 cut(s) | 134, 275, 280, 367, 454, 1294, 1411 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 169, 221, 529, 608, 617, 772, 992, 1111 |
| BstNI | CCWGG | 3 cut(s) | 77, 586, 653 |
| BstNSI | RCATGY | 1 cut(s) | 593 |
| BstPI | GGTNACC | 6 cut(s) | 50, 311, 343, 398, 430, 485 |
| BstSCI | CCNGG | 6 cut(s) | 75, 347, 434, 489, 584, 651 |
| BstSFI | CTRYAG | 2 cut(s) | 556, 1125 |
| BstSLI | GKGCMC | 2 cut(s) | 634, 696 |
| BstUI | CGCG | 2 cut(s) | 87, 955 |
| BstV1I | GCAGC | 5 cut(s) | 202, 544, 988, 1120, 1142 |
| BstX2I | RGATCY | 3 cut(s) | 134, 275, 1294 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 847 |
| BstYI | RGATCY | 3 cut(s) | 134, 275, 1294 |
| BsuRI | GGCC | 4 cut(s) | 542, 584, 632, 839 |
| BtgI | CCRYGG | 1 cut(s) | 840 |
| BtgZI | GCGATG | 1 cut(s) | 1005 |
| BtsCI | GGATG | 3 cut(s) | 568, 949, 1169 |
| BtsI | GCAGTG | 4 cut(s) | 694, 773, 997, 1094 |
| BtsIMutI | CAGTG | 5 cut(s) | 120, 694, 773, 997, 1094 |
| BveI | ACCTGC | 1 cut(s) | 514 |
| Cac8I | GCNNGC | 2 cut(s) | 915, 988 |
| CaiI | CAGNNNCTG | 1 cut(s) | 544 |
| CfoI | GCGC | 4 cut(s) | 365, 452, 919, 955 |
| Cfr10I | RCCGGY | 1 cut(s) | 191 |
| Cfr13I | GGNCC | 4 cut(s) | 541, 582, 630, 631 |
| CseI | GACGC | 3 cut(s) | 90, 178, 944 |
| Csp6I | GTAC | 1 cut(s) | 566 |
| CspAI | ACCGGT | 1 cut(s) | 191 |
| CviAII | CATG | 3 cut(s) | 590, 841, 1370 |
| CviQI | GTAC | 1 cut(s) | 566 |
| DdeI | CTNAG | 5 cut(s) | 164, 961, 1002, 1227, 1505 |
| DinI | GGCGCC | 2 cut(s) | 364, 451 |
| DpnI | GATC | 7 cut(s) | 136, 277, 282, 369, 456, 1296, 1413 |
| DpnII | GATC | 7 cut(s) | 134, 275, 280, 367, 454, 1294, 1411 |
| EaeI | YGGCCR | 1 cut(s) | 837 |
| Eam1104I | CTCTTC | 1 cut(s) | 1306 |
| EarI | CTCTTC | 1 cut(s) | 1306 |
| EciI | GGCGGA | 3 cut(s) | 16, 145, 1101 |
| Eco130I | CCWWGG | 1 cut(s) | 840 |
| Eco24I | GRGCYC | 3 cut(s) | 604, 634, 647 |
| Eco32I | GATATC | 2 cut(s) | 1444, 1453 |
| Eco88I | CYCGRG | 1 cut(s) | 1284 |
| Eco91I | GGTNACC | 6 cut(s) | 50, 311, 343, 398, 430, 485 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1423 |
| EcoO109I | RGGNCCY | 1 cut(s) | 541 |
| EcoO65I | GGTNACC | 6 cut(s) | 50, 311, 343, 398, 430, 485 |
| EcoRII | CCWGG | 3 cut(s) | 75, 584, 651 |
| EcoRV | GATATC | 2 cut(s) | 1444, 1453 |
| EcoT14I | CCWWGG | 1 cut(s) | 840 |
| EcoT38I | GRGCYC | 3 cut(s) | 604, 634, 647 |
| EgeI | GGCGCC | 2 cut(s) | 364, 451 |
| EheI | GGCGCC | 2 cut(s) | 364, 451 |
| ErhI | CCWWGG | 1 cut(s) | 840 |
| Esp3I | CGTCTC | 4 cut(s) | 313, 368, 400, 455 |
| FaeI | CATG | 3 cut(s) | 593, 844, 1373 |
| FaqI | GGGAC | 2 cut(s) | 93, 1177 |
| FatI | CATG | 3 cut(s) | 589, 840, 1369 |
| FauI | CCCGC | 1 cut(s) | 293 |
| Fnu4HI | GCNGC | 8 cut(s) | 85, 216, 506, 533, 548, 977, 1131, 1134 |
| FokI | GGATG | 3 cut(s) | 575, 956, 1156 |
| FriOI | GRGCYC | 3 cut(s) | 604, 634, 647 |
| Fsp4HI | GCNGC | 8 cut(s) | 85, 216, 506, 533, 548, 977, 1131, 1134 |
| FspBI | CTAG | 8 cut(s) | 138, 284, 371, 458, 615, 734, 1494, 1531 |
| FspI | TGCGCA | 1 cut(s) | 918 |
| GlaI | GCGC | 4 cut(s) | 364, 451, 918, 954 |
| GluI | GCNGC | 8 cut(s) | 85, 216, 506, 533, 548, 977, 1131, 1134 |
| GsaI | CCCAGC | 7 cut(s) | 182, 336, 391, 423, 478, 578, 601 |
| GsuI | CTGGAG | 1 cut(s) | 773 |
| HaeII | RGCGCY | 2 cut(s) | 366, 453 |
| HaeIII | GGCC | 4 cut(s) | 542, 584, 632, 839 |
| HapII | CCGG | 7 cut(s) | 192, 316, 348, 403, 435, 490, 1059 |
| HgaI | GACGC | 3 cut(s) | 90, 178, 944 |
| HhaI | GCGC | 4 cut(s) | 365, 452, 919, 955 |
| Hin1I | GRCGYC | 3 cut(s) | 82, 363, 450 |
| Hin1II | CATG | 3 cut(s) | 593, 844, 1373 |
| Hin6I | GCGC | 4 cut(s) | 363, 450, 917, 953 |
| HinP1I | GCGC | 4 cut(s) | 363, 450, 917, 953 |
| HincII | GTYRAC | 5 cut(s) | 354, 441, 496, 826, 883 |
| HindII | GTYRAC | 5 cut(s) | 354, 441, 496, 826, 883 |
| HinfI | GANTC | 4 cut(s) | 860, 1154, 1253, 1477 |
| HpaII | CCGG | 7 cut(s) | 192, 316, 348, 403, 435, 490, 1059 |
| Hpy166II | GTNNAC | 6 cut(s) | 354, 441, 496, 694, 826, 883 |
| Hpy188I | TCNGA | 7 cut(s) | 10, 38, 150, 280, 785, 1258, 1506 |
| Hpy8I | GTNNAC | 6 cut(s) | 354, 441, 496, 694, 826, 883 |
| Hpy99I | CGWCG | 2 cut(s) | 10, 38 |
| HpyCH4III | ACNGT | 4 cut(s) | 124, 821, 910, 1350 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 169, 221, 529, 608, 617, 772, 992, 1111 |
| HpyF3I | CTNAG | 5 cut(s) | 164, 961, 1002, 1227, 1505 |
| Hsp92I | GRCGYC | 3 cut(s) | 82, 363, 450 |
| Hsp92II | CATG | 3 cut(s) | 593, 844, 1373 |
| HspAI | GCGC | 4 cut(s) | 363, 450, 917, 953 |
| KasI | GGCGCC | 2 cut(s) | 362, 449 |
| Kzo9I | GATC | 7 cut(s) | 134, 275, 280, 367, 454, 1294, 1411 |
| LguI | GCTCTTC | 1 cut(s) | 1306 |
| LmnI | GCTCC | 3 cut(s) | 802, 1016, 1141 |
| Lsp1109I | GCAGC | 5 cut(s) | 202, 544, 988, 1120, 1142 |
| LweI | GCATC | 3 cut(s) | 904, 1028, 1406 |
| MaeI | CTAG | 8 cut(s) | 138, 284, 371, 458, 615, 734, 1494, 1531 |
| MalI | GATC | 7 cut(s) | 136, 277, 282, 369, 456, 1296, 1413 |
| MboI | GATC | 7 cut(s) | 134, 275, 280, 367, 454, 1294, 1411 |
| MboII | GAAGA | 3 cut(s) | 710, 1323, 1402 |
| MfeI | CAATTG | 2 cut(s) | 58, 1431 |
| MflI | RGATCY | 3 cut(s) | 134, 275, 1294 |
| MhlI | GDGCHC | 4 cut(s) | 604, 634, 647, 696 |
| MlsI | TGGCCA | 1 cut(s) | 839 |
| MluCI | AATT | 6 cut(s) | 58, 700, 937, 1140, 1431, 1460 |
| MluNI | TGGCCA | 1 cut(s) | 839 |
| Mly113I | GGCGCC | 2 cut(s) | 363, 450 |
| MlyI | GAGTC | 1 cut(s) | 854 |
| MmeI | TCCRAC | 2 cut(s) | 16, 128 |
| Mox20I | TGGCCA | 1 cut(s) | 839 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1476 |
| MscI | TGGCCA | 1 cut(s) | 839 |
| MseI | TTAA | 2 cut(s) | 831, 936 |
| MslI | CAYNNNNRTG | 2 cut(s) | 833, 963 |
| Msp20I | TGGCCA | 1 cut(s) | 839 |
| MspA1I | CMGCKG | 2 cut(s) | 729, 1133 |
| MspI | CCGG | 7 cut(s) | 192, 316, 348, 403, 435, 490, 1059 |
| MspR9I | CCNGG | 6 cut(s) | 77, 349, 436, 491, 586, 653 |
| MunI | CAATTG | 2 cut(s) | 58, 1431 |
| MvaI | CCWGG | 3 cut(s) | 77, 586, 653 |
| MvnI | CGCG | 2 cut(s) | 87, 955 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 169, 221, 529, 608, 617, 772, 992, 1111 |
| NarI | GGCGCC | 2 cut(s) | 363, 450 |
| NciI | CCSGG | 3 cut(s) | 349, 436, 491 |
| NcoI | CCATGG | 1 cut(s) | 840 |
| NdeII | GATC | 7 cut(s) | 134, 275, 280, 367, 454, 1294, 1411 |
| NlaIII | CATG | 3 cut(s) | 593, 844, 1373 |
| NlaIV | GGNNCC | 4 cut(s) | 364, 451, 632, 1296 |
| NsbI | TGCGCA | 1 cut(s) | 918 |
| NspI | RCATGY | 1 cut(s) | 593 |
| OliI | CACNNNNGTG | 1 cut(s) | 963 |
| PaqCI | CACCTGC | 1 cut(s) | 514 |
| PciSI | GCTCTTC | 1 cut(s) | 1306 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1476 |
| PfeI | GAWTC | 3 cut(s) | 1154, 1253, 1477 |
| PflFI | GACNNNGTC | 1 cut(s) | 172 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 640 |
| PinAI | ACCGGT | 1 cut(s) | 191 |
| PkrI | GCNGC | 8 cut(s) | 86, 217, 507, 534, 549, 978, 1132, 1135 |
| PleI | GAGTC | 1 cut(s) | 854 |
| PluTI | GGCGCC | 2 cut(s) | 366, 453 |
| PpsI | GAGTC | 1 cut(s) | 854 |
| Psp6I | CCWGG | 3 cut(s) | 75, 584, 651 |
| PspEI | GGTNACC | 6 cut(s) | 50, 311, 343, 398, 430, 485 |
| PspFI | CCCAGC | 7 cut(s) | 178, 332, 387, 419, 474, 574, 597 |
| PspGI | CCWGG | 3 cut(s) | 75, 584, 651 |
| PspN4I | GGNNCC | 4 cut(s) | 364, 451, 632, 1296 |
| PspOMI | GGGCCC | 1 cut(s) | 630 |
| PspPI | GGNCC | 4 cut(s) | 541, 582, 630, 631 |
| PstI | CTGCAG | 1 cut(s) | 560 |
| PstNI | CAGNNNCTG | 1 cut(s) | 544 |
| PsuI | RGATCY | 3 cut(s) | 134, 275, 1294 |
| PsyI | GACNNNGTC | 1 cut(s) | 172 |
| PvuII | CAGCTG | 1 cut(s) | 1133 |
| RsaI | GTAC | 1 cut(s) | 567 |
| RsaNI | GTAC | 1 cut(s) | 566 |
| RseI | CAYNNNNRTG | 2 cut(s) | 833, 963 |
| SapI | GCTCTTC | 1 cut(s) | 1306 |
| SaqAI | TTAA | 2 cut(s) | 831, 936 |
| SatI | GCNGC | 8 cut(s) | 85, 216, 506, 533, 548, 977, 1131, 1134 |
| Sau3AI | GATC | 7 cut(s) | 134, 275, 280, 367, 454, 1294, 1411 |
| Sau96I | GGNCC | 4 cut(s) | 541, 582, 630, 631 |
| SchI | GAGTC | 1 cut(s) | 854 |
| ScrFI | CCNGG | 6 cut(s) | 77, 349, 436, 491, 586, 653 |
| SduI | GDGCHC | 4 cut(s) | 604, 634, 647, 696 |
| SfaNI | GCATC | 3 cut(s) | 904, 1028, 1406 |
| SfcI | CTRYAG | 2 cut(s) | 556, 1125 |
| SfoI | GGCGCC | 2 cut(s) | 364, 451 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 833, 963 |
| Sse9I | AATT | 6 cut(s) | 58, 700, 937, 1140, 1431, 1460 |
| SsiI | CCGC | 9 cut(s) | 27, 85, 130, 224, 300, 505, 547, 729, 1112 |
| SspDI | GGCGCC | 2 cut(s) | 362, 449 |
| SspMI | CTAG | 8 cut(s) | 138, 284, 371, 458, 615, 734, 1494, 1531 |
| StyD4I | CCNGG | 6 cut(s) | 75, 347, 434, 489, 584, 651 |
| StyI | CCWWGG | 1 cut(s) | 840 |
| TaaI | ACNGT | 4 cut(s) | 124, 821, 910, 1350 |
| TaqI | TCGA | 4 cut(s) | 72, 230, 1423, 1480 |
| TasI | AATT | 6 cut(s) | 58, 700, 937, 1140, 1431, 1460 |
| TauI | GCSGC | 3 cut(s) | 87, 508, 550 |
| TfiI | GAWTC | 3 cut(s) | 1154, 1253, 1477 |
| Tru1I | TTAA | 2 cut(s) | 831, 936 |
| Tru9I | TTAA | 2 cut(s) | 831, 936 |
| TscAI | CASTG | 5 cut(s) | 127, 701, 773, 997, 1101 |
| TseI | GCWGC | 5 cut(s) | 215, 532, 976, 1130, 1133 |
| TspDTI | ATGAA | 4 cut(s) | 1232, 1275, 1317, 1403 |
| TspGWI | ACGGA | 5 cut(s) | 22, 337, 392, 424, 479 |
| TspRI | CASTG | 5 cut(s) | 127, 701, 773, 997, 1101 |
| Tth111I | GACNNNGTC | 1 cut(s) | 172 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 640 |
| VneI | GTGCAC | 1 cut(s) | 692 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1423 |
| XbaI | TCTAGA | 4 cut(s) | 283, 370, 457, 733 |
| XceI | RCATGY | 1 cut(s) | 593 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 576 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1476 |
| XspI | CTAG | 8 cut(s) | 138, 284, 371, 458, 615, 734, 1494, 1531 |