BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 435 |
| Acc36I | ACCTGC | 1 cut(s) | 435 |
| AccI | GTMKAC | 1 cut(s) | 839 |
| AciI | CCGC | 1 cut(s) | 647 |
| AclWI | GGATC | 3 cut(s) | 566, 579, 685 |
| AcoI | YGGCCR | 1 cut(s) | 975 |
| AcsI | RAATTY | 1 cut(s) | 599 |
| AcuI | CTGAAG | 1 cut(s) | 546 |
| AfaI | GTAC | 2 cut(s) | 306, 909 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 94 |
| AflIII | ACRYGT | 1 cut(s) | 537 |
| AgsI | TTSAA | 9 cut(s) | 80, 251, 279, 297, 389, 500, 589, 904, 1057 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 816, 848 |
| AluBI | AGCT | 9 cut(s) | 94, 235, 407, 436, 560, 636, 856, 1034, 1095 |
| AluI | AGCT | 9 cut(s) | 94, 235, 407, 436, 560, 636, 856, 1034, 1095 |
| Alw21I | GWGCWC | 3 cut(s) | 438, 926, 1088 |
| Alw26I | GTCTC | 2 cut(s) | 435, 607 |
| Alw44I | GTGCAC | 1 cut(s) | 1084 |
| AlwI | GGATC | 3 cut(s) | 566, 579, 685 |
| AoxI | GGCC | 3 cut(s) | 660, 975, 1028 |
| ApaLI | GTGCAC | 1 cut(s) | 1084 |
| ApoI | RAATTY | 1 cut(s) | 599 |
| AspS9I | GGNCC | 1 cut(s) | 660 |
| AsuC2I | CCSGG | 1 cut(s) | 314 |
| AsuHPI | GGTGA | 1 cut(s) | 214 |
| BaeGI | GKGCMC | 1 cut(s) | 1088 |
| BalI | TGGCCA | 1 cut(s) | 977 |
| BamHI | GGATCC | 1 cut(s) | 571 |
| BanII | GRGCYC | 1 cut(s) | 438 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 621, 653 |
| BbsI | GAAGAC | 1 cut(s) | 753 |
| Bbv12I | GWGCWC | 3 cut(s) | 438, 926, 1088 |
| BccI | CCATC | 1 cut(s) | 316 |
| BceAI | ACGGC | 1 cut(s) | 72 |
| BciVI | GTATCC | 1 cut(s) | 951 |
| BclI | TGATCA | 1 cut(s) | 123 |
| BcnI | CCSGG | 1 cut(s) | 314 |
| BcoDI | GTCTC | 2 cut(s) | 435, 607 |
| BfaI | CTAG | 2 cut(s) | 743, 954 |
| BfuAI | ACCTGC | 1 cut(s) | 435 |
| BfuI | GTATCC | 1 cut(s) | 951 |
| Bme1390I | CCNGG | 1 cut(s) | 314 |
| BmgT120I | GGNCC | 1 cut(s) | 660 |
| BmiI | GGNNCC | 2 cut(s) | 573, 661 |
| BmrFI | CCNGG | 1 cut(s) | 314 |
| BmsI | GCATC | 3 cut(s) | 133, 369, 922 |
| BpiI | GAAGAC | 1 cut(s) | 753 |
| BpuMI | CCSGG | 1 cut(s) | 314 |
| BsaBI | GATNNNNATC | 2 cut(s) | 684, 864 |
| BsaJI | CCNNGG | 3 cut(s) | 312, 567, 1025 |
| BsaWI | WCCGGW | 2 cut(s) | 473, 737 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 480, 510 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 94 |
| Bse1I | ACTGG | 2 cut(s) | 814, 983 |
| Bse8I | GATNNNNATC | 2 cut(s) | 684, 864 |
| BseDI | CCNNGG | 3 cut(s) | 312, 567, 1025 |
| BseGI | GGATG | 5 cut(s) | 57, 148, 308, 655, 819 |
| BseJI | GATNNNNATC | 2 cut(s) | 684, 864 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 94 |
| BseNI | ACTGG | 2 cut(s) | 814, 983 |
| BseRI | GAGGAG | 1 cut(s) | 756 |
| BseSI | GKGCMC | 1 cut(s) | 1088 |
| BsgI | GTGCAG | 1 cut(s) | 158 |
| BshFI | GGCC | 3 cut(s) | 662, 977, 1030 |
| BsiHKAI | GWGCWC | 3 cut(s) | 438, 926, 1088 |
| BsiSI | CCGG | 3 cut(s) | 314, 474, 738 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 94 |
| BsmAI | GTCTC | 2 cut(s) | 435, 607 |
| BsmI | GAATGC | 1 cut(s) | 1078 |
| BsnI | GGCC | 3 cut(s) | 662, 977, 1030 |
| Bsp1286I | GDGCHC | 3 cut(s) | 438, 926, 1088 |
| Bsp143I | GATC | 4 cut(s) | 13, 123, 571, 690 |
| BspACI | CCGC | 1 cut(s) | 647 |
| BspANI | GGCC | 3 cut(s) | 662, 977, 1030 |
| BspLI | GGNNCC | 2 cut(s) | 573, 661 |
| BspMI | ACCTGC | 1 cut(s) | 435 |
| BspPI | GGATC | 3 cut(s) | 566, 579, 685 |
| BsrI | ACTGG | 2 cut(s) | 814, 983 |
| BssECI | CCNNGG | 3 cut(s) | 312, 567, 1025 |
| BssMI | GATC | 4 cut(s) | 13, 123, 571, 690 |
| BssT1I | CCWWGG | 2 cut(s) | 567, 1025 |
| Bst6I | CTCTTC | 1 cut(s) | 280 |
| BstC8I | GCNNGC | 3 cut(s) | 243, 506, 1032 |
| BstDEI | CTNAG | 1 cut(s) | 261 |
| BstF5I | GGATG | 5 cut(s) | 57, 148, 308, 655, 819 |
| BstKTI | GATC | 4 cut(s) | 16, 126, 574, 693 |
| BstMAI | GTCTC | 2 cut(s) | 435, 607 |
| BstMBI | GATC | 4 cut(s) | 13, 123, 571, 690 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1092 |
| BstNSI | RCATGY | 3 cut(s) | 245, 508, 541 |
| BstSCI | CCNGG | 1 cut(s) | 312 |
| BstSLI | GKGCMC | 1 cut(s) | 1088 |
| BstV2I | GAAGAC | 1 cut(s) | 753 |
| BstX2I | RGATCY | 1 cut(s) | 571 |
| BstYI | RGATCY | 1 cut(s) | 571 |
| BsuI | GTATCC | 1 cut(s) | 951 |
| BsuRI | GGCC | 3 cut(s) | 662, 977, 1030 |
| BtsCI | GGATG | 5 cut(s) | 57, 148, 308, 655, 819 |
| BtsI | GCAGTG | 1 cut(s) | 924 |
| BtsIMutI | CAGTG | 2 cut(s) | 924, 1108 |
| BveI | ACCTGC | 1 cut(s) | 435 |
| Cac8I | GCNNGC | 3 cut(s) | 243, 506, 1032 |
| Cfr13I | GGNCC | 1 cut(s) | 660 |
| Csp6I | GTAC | 2 cut(s) | 305, 908 |
| CviAII | CATG | 8 cut(s) | 101, 242, 431, 505, 538, 544, 718, 887 |
| CviQI | GTAC | 2 cut(s) | 305, 908 |
| DdeI | CTNAG | 1 cut(s) | 261 |
| DpnI | GATC | 4 cut(s) | 15, 125, 573, 692 |
| DpnII | GATC | 4 cut(s) | 13, 123, 571, 690 |
| EaeI | YGGCCR | 1 cut(s) | 975 |
| Eam1104I | CTCTTC | 1 cut(s) | 280 |
| EarI | CTCTTC | 1 cut(s) | 280 |
| Ecl136II | GAGCTC | 1 cut(s) | 436 |
| Eco130I | CCWWGG | 2 cut(s) | 567, 1025 |
| Eco24I | GRGCYC | 1 cut(s) | 438 |
| Eco53kI | GAGCTC | 1 cut(s) | 436 |
| Eco57I | CTGAAG | 1 cut(s) | 546 |
| EcoICRI | GAGCTC | 1 cut(s) | 436 |
| EcoT14I | CCWWGG | 2 cut(s) | 567, 1025 |
| EcoT22I | ATGCAT | 1 cut(s) | 148 |
| EcoT38I | GRGCYC | 1 cut(s) | 438 |
| ErhI | CCWWGG | 2 cut(s) | 567, 1025 |
| FaeI | CATG | 8 cut(s) | 104, 245, 434, 508, 541, 547, 721, 890 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 698, 730, 1049, 1081 |
| FatI | CATG | 8 cut(s) | 100, 241, 430, 504, 537, 543, 717, 886 |
| FauNDI | CATATG | 1 cut(s) | 1003 |
| FbaI | TGATCA | 1 cut(s) | 123 |
| FblI | GTMKAC | 1 cut(s) | 839 |
| FokI | GGATG | 5 cut(s) | 44, 155, 295, 662, 806 |
| FriOI | GRGCYC | 1 cut(s) | 438 |
| FspBI | CTAG | 2 cut(s) | 743, 954 |
| HaeIII | GGCC | 3 cut(s) | 662, 977, 1030 |
| HapII | CCGG | 3 cut(s) | 314, 474, 738 |
| Hin1II | CATG | 8 cut(s) | 104, 245, 434, 508, 541, 547, 721, 890 |
| HindIII | AAGCTT | 1 cut(s) | 634 |
| HinfI | GANTC | 6 cut(s) | 293, 389, 470, 615, 758, 892 |
| HpaII | CCGG | 3 cut(s) | 314, 474, 738 |
| HphI | GGTGA | 1 cut(s) | 214 |
| Hpy166II | GTNNAC | 3 cut(s) | 781, 840, 1086 |
| Hpy188I | TCNGA | 4 cut(s) | 440, 450, 690, 853 |
| Hpy188III | TCNNGA | 5 cut(s) | 355, 743, 869, 896, 954 |
| Hpy8I | GTNNAC | 3 cut(s) | 781, 840, 1086 |
| HpyAV | CCTTC | 2 cut(s) | 494, 623 |
| HpyCH4V | TGCA | 5 cut(s) | 139, 146, 430, 802, 1086 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1092 |
| HpyF3I | CTNAG | 1 cut(s) | 261 |
| Hsp92II | CATG | 8 cut(s) | 104, 245, 434, 508, 541, 547, 721, 890 |
| Ksp22I | TGATCA | 1 cut(s) | 123 |
| Kzo9I | GATC | 4 cut(s) | 13, 123, 571, 690 |
| LmnI | GCTCC | 3 cut(s) | 441, 488, 921 |
| LweI | GCATC | 3 cut(s) | 133, 369, 922 |
| MaeI | CTAG | 2 cut(s) | 743, 954 |
| MaeIII | GTNAC | 2 cut(s) | 286, 722 |
| MalI | GATC | 4 cut(s) | 15, 125, 573, 692 |
| MboI | GATC | 4 cut(s) | 13, 123, 571, 690 |
| MboII | GAAGA | 6 cut(s) | 82, 267, 329, 337, 753, 884 |
| MfeI | CAATTG | 1 cut(s) | 824 |
| MflI | RGATCY | 1 cut(s) | 571 |
| MhlI | GDGCHC | 3 cut(s) | 438, 926, 1088 |
| MlsI | TGGCCA | 1 cut(s) | 977 |
| MluCI | AATT | 6 cut(s) | 32, 185, 251, 584, 599, 824 |
| MluNI | TGGCCA | 1 cut(s) | 977 |
| MlyI | GAGTC | 4 cut(s) | 464, 609, 767, 901 |
| MnlI | CCTC | 3 cut(s) | 328, 585, 777 |
| Mox20I | TGGCCA | 1 cut(s) | 977 |
| Mph1103I | ATGCAT | 1 cut(s) | 148 |
| MscI | TGGCCA | 1 cut(s) | 977 |
| MseI | TTAA | 5 cut(s) | 159, 401, 483, 792, 1079 |
| MslI | CAYNNNNRTG | 2 cut(s) | 429, 542 |
| Msp20I | TGGCCA | 1 cut(s) | 977 |
| MspA1I | CMGCKG | 2 cut(s) | 94, 1034 |
| MspI | CCGG | 3 cut(s) | 314, 474, 738 |
| MspR9I | CCNGG | 1 cut(s) | 314 |
| MunI | CAATTG | 1 cut(s) | 824 |
| Mva1269I | GAATGC | 1 cut(s) | 1078 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1092 |
| NciI | CCSGG | 1 cut(s) | 314 |
| NdeI | CATATG | 1 cut(s) | 1003 |
| NdeII | GATC | 4 cut(s) | 13, 123, 571, 690 |
| NlaIII | CATG | 8 cut(s) | 104, 245, 434, 508, 541, 547, 721, 890 |
| NlaIV | GGNNCC | 2 cut(s) | 573, 661 |
| NmuCI | GTSAC | 1 cut(s) | 286 |
| NsiI | ATGCAT | 1 cut(s) | 148 |
| NspI | RCATGY | 3 cut(s) | 245, 508, 541 |
| PaeI | GCATGC | 2 cut(s) | 245, 508 |
| PaqCI | CACCTGC | 1 cut(s) | 435 |
| PciI | ACATGT | 1 cut(s) | 537 |
| PctI | GAATGC | 1 cut(s) | 1078 |
| PfeI | GAWTC | 2 cut(s) | 293, 389 |
| PleI | GAGTC | 4 cut(s) | 464, 609, 766, 900 |
| PpsI | GAGTC | 4 cut(s) | 464, 609, 766, 900 |
| PscI | ACATGT | 1 cut(s) | 537 |
| Psp124BI | GAGCTC | 1 cut(s) | 438 |
| PspN4I | GGNNCC | 2 cut(s) | 573, 661 |
| PspPI | GGNCC | 1 cut(s) | 660 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 867, 899 |
| PsuI | RGATCY | 1 cut(s) | 571 |
| PvuII | CAGCTG | 2 cut(s) | 94, 1034 |
| RsaI | GTAC | 2 cut(s) | 306, 909 |
| RsaNI | GTAC | 2 cut(s) | 305, 908 |
| RseI | CAYNNNNRTG | 2 cut(s) | 429, 542 |
| SacI | GAGCTC | 1 cut(s) | 438 |
| SaqAI | TTAA | 5 cut(s) | 159, 401, 483, 792, 1079 |
| Sau3AI | GATC | 4 cut(s) | 13, 123, 571, 690 |
| Sau96I | GGNCC | 1 cut(s) | 660 |
| SchI | GAGTC | 4 cut(s) | 464, 609, 767, 901 |
| ScrFI | CCNGG | 1 cut(s) | 314 |
| SduI | GDGCHC | 3 cut(s) | 438, 926, 1088 |
| SfaNI | GCATC | 3 cut(s) | 133, 369, 922 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 429, 542 |
| SphI | GCATGC | 2 cut(s) | 245, 508 |
| Sse9I | AATT | 6 cut(s) | 32, 185, 251, 584, 599, 824 |
| SsiI | CCGC | 1 cut(s) | 647 |
| SspMI | CTAG | 2 cut(s) | 743, 954 |
| SstI | GAGCTC | 1 cut(s) | 438 |
| StyD4I | CCNGG | 1 cut(s) | 312 |
| StyI | CCWWGG | 2 cut(s) | 567, 1025 |
| TaqI | TCGA | 3 cut(s) | 354, 577, 870 |
| TasI | AATT | 6 cut(s) | 32, 185, 251, 584, 599, 824 |
| TatI | WGTACW | 1 cut(s) | 907 |
| TfiI | GAWTC | 2 cut(s) | 293, 389 |
| Tru1I | TTAA | 5 cut(s) | 159, 401, 483, 792, 1079 |
| Tru9I | TTAA | 5 cut(s) | 159, 401, 483, 792, 1079 |
| TscAI | CASTG | 1 cut(s) | 931 |
| TseFI | GTSAC | 1 cut(s) | 286 |
| Tsp45I | GTSAC | 1 cut(s) | 286 |
| TspDTI | ATGAA | 9 cut(s) | 89, 381, 532, 706, 808, 990, 1020, 1053, 1085 |
| TspGWI | ACGGA | 1 cut(s) | 683 |
| TspRI | CASTG | 1 cut(s) | 931 |
| VneI | GTGCAC | 1 cut(s) | 1084 |
| XapI | RAATTY | 1 cut(s) | 599 |
| XbaI | TCTAGA | 2 cut(s) | 742, 953 |
| XceI | RCATGY | 3 cut(s) | 245, 508, 541 |
| XmiI | GTMKAC | 1 cut(s) | 839 |
| XspI | CTAG | 2 cut(s) | 743, 954 |
| Zsp2I | ATGCAT | 1 cut(s) | 148 |