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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 174 |
| AccI | GTMKAC | 1 cut(s) | 95 |
| AccII | CGCG | 1 cut(s) | 177 |
| AciI | CCGC | 6 cut(s) | 45, 172, 175, 220, 313, 333 |
| AclWI | GGATC | 1 cut(s) | 359 |
| AcyI | GRCGYC | 1 cut(s) | 260 |
| AfaI | GTAC | 1 cut(s) | 35 |
| AgsI | TTSAA | 1 cut(s) | 31 |
| AjnI | CCWGG | 1 cut(s) | 153 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 214, 246 |
| AluBI | AGCT | 1 cut(s) | 42 |
| AluI | AGCT | 1 cut(s) | 42 |
| Alw21I | GWGCWC | 1 cut(s) | 44 |
| AlwI | GGATC | 1 cut(s) | 359 |
| ApeKI | GCWGC | 2 cut(s) | 69, 304 |
| AspLEI | GCGC | 1 cut(s) | 171 |
| BanII | GRGCYC | 1 cut(s) | 44 |
| Bbv12I | GWGCWC | 1 cut(s) | 44 |
| BbvCI | CCTCAGC | 1 cut(s) | 254 |
| BbvI | GCAGC | 2 cut(s) | 56, 291 |
| BccI | CCATC | 2 cut(s) | 371, 378 |
| BceAI | ACGGC | 2 cut(s) | 32, 247 |
| BciT130I | CCWGG | 1 cut(s) | 155 |
| BfaI | CTAG | 3 cut(s) | 228, 329, 372 |
| BfuAI | ACCTGC | 1 cut(s) | 174 |
| BglII | AGATCT | 1 cut(s) | 224 |
| BisI | GCNGC | 4 cut(s) | 70, 172, 175, 305 |
| BlsI | GCNGC | 4 cut(s) | 71, 173, 176, 306 |
| Bme1390I | CCNGG | 1 cut(s) | 155 |
| BmrFI | CCNGG | 1 cut(s) | 155 |
| Bpu10I | CCTNAGC | 1 cut(s) | 254 |
| BpuEI | CTTGAG | 1 cut(s) | 110 |
| BsaHI | GRCGYC | 1 cut(s) | 260 |
| BsaJI | CCNNGG | 1 cut(s) | 154 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 26, 56, 214, 244 |
| BseBI | CCWGG | 1 cut(s) | 155 |
| BseDI | CCNNGG | 1 cut(s) | 154 |
| BseGI | GGATG | 1 cut(s) | 389 |
| BseMII | CTCAG | 1 cut(s) | 245 |
| BseRI | GAGGAG | 2 cut(s) | 209, 212 |
| BseXI | GCAGC | 2 cut(s) | 56, 291 |
| BseYI | CCCAGC | 1 cut(s) | 388 |
| Bsh1236I | CGCG | 1 cut(s) | 177 |
| BsiHKAI | GWGCWC | 1 cut(s) | 44 |
| Bsp1286I | GDGCHC | 1 cut(s) | 44 |
| Bsp143I | GATC | 3 cut(s) | 201, 224, 364 |
| BspACI | CCGC | 6 cut(s) | 45, 172, 175, 220, 313, 333 |
| BspCNI | CTCAG | 1 cut(s) | 246 |
| BspFNI | CGCG | 1 cut(s) | 177 |
| BspMI | ACCTGC | 1 cut(s) | 174 |
| BspPI | GGATC | 1 cut(s) | 359 |
| BssECI | CCNNGG | 1 cut(s) | 154 |
| BssMI | GATC | 3 cut(s) | 201, 224, 364 |
| BssNI | GRCGYC | 1 cut(s) | 260 |
| Bst2UI | CCWGG | 1 cut(s) | 155 |
| Bst4CI | ACNGT | 1 cut(s) | 214 |
| Bst6I | CTCTTC | 3 cut(s) | 123, 142, 316 |
| BstACI | GRCGYC | 1 cut(s) | 260 |
| BstDEI | CTNAG | 1 cut(s) | 254 |
| BstF5I | GGATG | 1 cut(s) | 389 |
| BstFNI | CGCG | 1 cut(s) | 177 |
| BstHHI | GCGC | 1 cut(s) | 171 |
| BstKTI | GATC | 3 cut(s) | 204, 227, 367 |
| BstMBI | GATC | 3 cut(s) | 201, 224, 364 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 259, 310 |
| BstNI | CCWGG | 1 cut(s) | 155 |
| BstSCI | CCNGG | 1 cut(s) | 153 |
| BstUI | CGCG | 1 cut(s) | 177 |
| BstV1I | GCAGC | 2 cut(s) | 56, 291 |
| BstX2I | RGATCY | 2 cut(s) | 224, 364 |
| BstYI | RGATCY | 2 cut(s) | 224, 364 |
| BtsCI | GGATG | 1 cut(s) | 389 |
| BtsIMutI | CAGTG | 1 cut(s) | 210 |
| BveI | ACCTGC | 1 cut(s) | 174 |
| CfoI | GCGC | 1 cut(s) | 171 |
| CseI | GACGC | 1 cut(s) | 268 |
| Csp6I | GTAC | 1 cut(s) | 34 |
| CviAII | CATG | 1 cut(s) | 205 |
| CviJI | RGCY | 4 cut(s) | 19, 42, 388, 393 |
| CviKI_1 | RGCY | 4 cut(s) | 19, 42, 388, 393 |
| CviQI | GTAC | 1 cut(s) | 34 |
| DdeI | CTNAG | 1 cut(s) | 254 |
| DpnI | GATC | 3 cut(s) | 203, 226, 366 |
| DpnII | GATC | 3 cut(s) | 201, 224, 364 |
| Eam1104I | CTCTTC | 3 cut(s) | 123, 142, 316 |
| EarI | CTCTTC | 3 cut(s) | 123, 142, 316 |
| EciI | GGCGGA | 3 cut(s) | 34, 235, 348 |
| Ecl136II | GAGCTC | 1 cut(s) | 42 |
| Eco24I | GRGCYC | 1 cut(s) | 44 |
| Eco53kI | GAGCTC | 1 cut(s) | 42 |
| EcoICRI | GAGCTC | 1 cut(s) | 42 |
| EcoRII | CCWGG | 1 cut(s) | 153 |
| EcoT38I | GRGCYC | 1 cut(s) | 44 |
| FaeI | CATG | 1 cut(s) | 208 |
| FaiI | YATR | 2 cut(s) | 100, 206 |
| FatI | CATG | 1 cut(s) | 204 |
| FblI | GTMKAC | 1 cut(s) | 95 |
| Fnu4HI | GCNGC | 4 cut(s) | 70, 172, 175, 305 |
| FokI | GGATG | 1 cut(s) | 396 |
| FriOI | GRGCYC | 1 cut(s) | 44 |
| Fsp4HI | GCNGC | 4 cut(s) | 70, 172, 175, 305 |
| FspBI | CTAG | 3 cut(s) | 228, 329, 372 |
| GlaI | GCGC | 1 cut(s) | 170 |
| GluI | GCNGC | 4 cut(s) | 70, 172, 175, 305 |
| GsaI | CCCAGC | 1 cut(s) | 392 |
| HgaI | GACGC | 1 cut(s) | 268 |
| HhaI | GCGC | 1 cut(s) | 171 |
| Hin1I | GRCGYC | 1 cut(s) | 260 |
| Hin1II | CATG | 1 cut(s) | 208 |
| Hin6I | GCGC | 1 cut(s) | 169 |
| HinP1I | GCGC | 1 cut(s) | 169 |
| HincII | GTYRAC | 2 cut(s) | 52, 96 |
| HindII | GTYRAC | 2 cut(s) | 52, 96 |
| HinfI | GANTC | 2 cut(s) | 57, 130 |
| Hpy166II | GTNNAC | 2 cut(s) | 52, 96 |
| Hpy188I | TCNGA | 2 cut(s) | 240, 369 |
| Hpy188III | TCNNGA | 4 cut(s) | 127, 141, 362, 399 |
| Hpy8I | GTNNAC | 2 cut(s) | 52, 96 |
| Hpy99I | CGWCG | 1 cut(s) | 268 |
| HpyAV | CCTTC | 2 cut(s) | 71, 181 |
| HpyCH4III | ACNGT | 1 cut(s) | 214 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 259, 310 |
| HpyF3I | CTNAG | 1 cut(s) | 254 |
| Hsp92I | GRCGYC | 1 cut(s) | 260 |
| Hsp92II | CATG | 1 cut(s) | 208 |
| HspAI | GCGC | 1 cut(s) | 169 |
| Kzo9I | GATC | 3 cut(s) | 201, 224, 364 |
| LmnI | GCTCC | 1 cut(s) | 47 |
| Lsp1109I | GCAGC | 2 cut(s) | 56, 291 |
| MaeI | CTAG | 3 cut(s) | 228, 329, 372 |
| MaeIII | GTNAC | 1 cut(s) | 208 |
| MalI | GATC | 3 cut(s) | 203, 226, 366 |
| MboI | GATC | 3 cut(s) | 201, 224, 364 |
| MboII | GAAGA | 3 cut(s) | 110, 129, 333 |
| MflI | RGATCY | 2 cut(s) | 224, 364 |
| MhlI | GDGCHC | 1 cut(s) | 44 |
| MluCI | AATT | 1 cut(s) | 179 |
| MlyI | GAGTC | 1 cut(s) | 124 |
| MmeI | TCCRAC | 2 cut(s) | 218, 392 |
| MnlI | CCTC | 7 cut(s) | 124, 177, 187, 190, 249, 302, 374 |
| MspR9I | CCNGG | 1 cut(s) | 155 |
| MvaI | CCWGG | 1 cut(s) | 155 |
| MvnI | CGCG | 1 cut(s) | 177 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 259, 310 |
| NdeII | GATC | 3 cut(s) | 201, 224, 364 |
| NlaIII | CATG | 1 cut(s) | 208 |
| NmuCI | GTSAC | 1 cut(s) | 208 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 83, 92 |
| PfeI | GAWTC | 1 cut(s) | 57 |
| PflFI | GACNNNGTC | 2 cut(s) | 91, 262 |
| PkrI | GCNGC | 4 cut(s) | 71, 173, 176, 306 |
| PleI | GAGTC | 1 cut(s) | 124 |
| PpsI | GAGTC | 1 cut(s) | 124 |
| Psp124BI | GAGCTC | 1 cut(s) | 44 |
| Psp6I | CCWGG | 1 cut(s) | 153 |
| PspFI | CCCAGC | 1 cut(s) | 388 |
| PspGI | CCWGG | 1 cut(s) | 153 |
| PsuI | RGATCY | 2 cut(s) | 224, 364 |
| PsyI | GACNNNGTC | 2 cut(s) | 91, 262 |
| RsaI | GTAC | 1 cut(s) | 35 |
| RsaNI | GTAC | 1 cut(s) | 34 |
| SacI | GAGCTC | 1 cut(s) | 44 |
| SalI | GTCGAC | 1 cut(s) | 94 |
| SatI | GCNGC | 4 cut(s) | 70, 172, 175, 305 |
| Sau3AI | GATC | 3 cut(s) | 201, 224, 364 |
| SchI | GAGTC | 1 cut(s) | 124 |
| ScrFI | CCNGG | 1 cut(s) | 155 |
| SduI | GDGCHC | 1 cut(s) | 44 |
| SetI | ASST | 4 cut(s) | 44, 168, 192, 286 |
| SmlI | CTYRAG | 1 cut(s) | 125 |
| SmoI | CTYRAG | 1 cut(s) | 125 |
| Sse9I | AATT | 1 cut(s) | 179 |
| SsiI | CCGC | 6 cut(s) | 45, 172, 175, 220, 313, 333 |
| SspMI | CTAG | 3 cut(s) | 228, 329, 372 |
| SstI | GAGCTC | 1 cut(s) | 44 |
| StyD4I | CCNGG | 1 cut(s) | 153 |
| TaaI | ACNGT | 1 cut(s) | 214 |
| TaqI | TCGA | 3 cut(s) | 95, 162, 319 |
| TasI | AATT | 1 cut(s) | 179 |
| TatI | WGTACW | 1 cut(s) | 33 |
| TauI | GCSGC | 2 cut(s) | 174, 177 |
| TfiI | GAWTC | 1 cut(s) | 57 |
| TscAI | CASTG | 1 cut(s) | 217 |
| TseFI | GTSAC | 1 cut(s) | 208 |
| TseI | GCWGC | 2 cut(s) | 69, 304 |
| Tsp45I | GTSAC | 1 cut(s) | 208 |
| TspDTI | ATGAA | 1 cut(s) | 110 |
| TspRI | CASTG | 1 cut(s) | 217 |
| Tth111I | GACNNNGTC | 2 cut(s) | 91, 262 |
| XmiI | GTMKAC | 1 cut(s) | 95 |
| XspI | CTAG | 3 cut(s) | 228, 329, 372 |