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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 103 |
| Acc36I | ACCTGC | 1 cut(s) | 103 |
| AccB1I | GGYRCC | 1 cut(s) | 38 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 229 |
| AccII | CGCG | 1 cut(s) | 297 |
| AciI | CCGC | 3 cut(s) | 8, 94, 136 |
| AcyI | GRCGYC | 1 cut(s) | 39 |
| AfaI | GTAC | 1 cut(s) | 156 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 164, 229, 324 |
| AjnI | CCWGG | 2 cut(s) | 173, 240 |
| AluBI | AGCT | 1 cut(s) | 163 |
| AluI | AGCT | 1 cut(s) | 163 |
| Alw26I | GTCTC | 1 cut(s) | 44 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 133 |
| AoxI | GGCC | 3 cut(s) | 129, 171, 219 |
| ApaI | GGGCCC | 1 cut(s) | 223 |
| ApeKI | GCWGC | 1 cut(s) | 121 |
| AspLEI | GCGC | 2 cut(s) | 41, 297 |
| AspS9I | GGNCC | 4 cut(s) | 130, 171, 219, 220 |
| AsuC2I | CCSGG | 2 cut(s) | 25, 80 |
| AsuHPI | GGTGA | 2 cut(s) | 31, 86 |
| BaeGI | GKGCMC | 1 cut(s) | 223 |
| BanI | GGYRCC | 1 cut(s) | 38 |
| BanII | GRGCYC | 3 cut(s) | 193, 223, 236 |
| BbvI | GCAGC | 1 cut(s) | 133 |
| BccI | CCATC | 1 cut(s) | 10 |
| BceAI | ACGGC | 2 cut(s) | 52, 107 |
| BciT130I | CCWGG | 2 cut(s) | 175, 242 |
| BcnI | CCSGG | 2 cut(s) | 25, 80 |
| BcoDI | GTCTC | 1 cut(s) | 44 |
| BfaI | CTAG | 3 cut(s) | 47, 204, 260 |
| BfoI | RGCGCY | 1 cut(s) | 42 |
| BfuAI | ACCTGC | 1 cut(s) | 103 |
| BisI | GCNGC | 3 cut(s) | 95, 122, 137 |
| BlsI | GCNGC | 3 cut(s) | 96, 123, 138 |
| Bme1390I | CCNGG | 4 cut(s) | 25, 80, 175, 242 |
| BmgT120I | GGNCC | 4 cut(s) | 130, 171, 219, 220 |
| BmiI | GGNNCC | 2 cut(s) | 40, 221 |
| BmrFI | CCNGG | 4 cut(s) | 25, 80, 175, 242 |
| BpuMI | CCSGG | 2 cut(s) | 25, 80 |
| BsaHI | GRCGYC | 1 cut(s) | 39 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 164, 229, 324 |
| BseBI | CCWGG | 2 cut(s) | 175, 242 |
| BseGI | GGATG | 1 cut(s) | 157 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 164, 229, 324 |
| BseSI | GKGCMC | 1 cut(s) | 223 |
| BseXI | GCAGC | 1 cut(s) | 133 |
| BseYI | CCCAGC | 3 cut(s) | 63, 163, 186 |
| BsgI | GTGCAG | 1 cut(s) | 140 |
| Bsh1236I | CGCG | 1 cut(s) | 297 |
| BshFI | GGCC | 3 cut(s) | 131, 173, 221 |
| BshNI | GGYRCC | 1 cut(s) | 38 |
| BsiSI | CCGG | 2 cut(s) | 24, 79 |
| BslFI | GGGAC | 1 cut(s) | 300 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 164, 229, 324 |
| BsmAI | GTCTC | 1 cut(s) | 44 |
| BsmBI | CGTCTC | 1 cut(s) | 44 |
| BsmFI | GGGAC | 1 cut(s) | 300 |
| BsnI | GGCC | 3 cut(s) | 131, 173, 221 |
| Bsp120I | GGGCCC | 1 cut(s) | 219 |
| Bsp1286I | GDGCHC | 3 cut(s) | 193, 223, 236 |
| Bsp143I | GATC | 1 cut(s) | 43 |
| BspACI | CCGC | 3 cut(s) | 8, 94, 136 |
| BspANI | GGCC | 3 cut(s) | 131, 173, 221 |
| BspFNI | CGCG | 1 cut(s) | 297 |
| BspLI | GGNNCC | 2 cut(s) | 40, 221 |
| BspMI | ACCTGC | 1 cut(s) | 103 |
| BspT107I | GGYRCC | 1 cut(s) | 38 |
| BssMI | GATC | 1 cut(s) | 43 |
| BssNI | GRCGYC | 1 cut(s) | 39 |
| Bst2UI | CCWGG | 2 cut(s) | 175, 242 |
| BstACI | GRCGYC | 1 cut(s) | 39 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 118 |
| BstEII | GGTNACC | 2 cut(s) | 19, 74 |
| BstF5I | GGATG | 1 cut(s) | 157 |
| BstFNI | CGCG | 1 cut(s) | 297 |
| BstH2I | RGCGCY | 1 cut(s) | 42 |
| BstHHI | GCGC | 2 cut(s) | 41, 297 |
| BstKTI | GATC | 1 cut(s) | 46 |
| BstMAI | GTCTC | 1 cut(s) | 44 |
| BstMBI | GATC | 1 cut(s) | 43 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 118, 197, 206, 301 |
| BstNI | CCWGG | 2 cut(s) | 175, 242 |
| BstNSI | RCATGY | 1 cut(s) | 182 |
| BstPI | GGTNACC | 2 cut(s) | 19, 74 |
| BstSCI | CCNGG | 4 cut(s) | 23, 78, 173, 240 |
| BstSLI | GKGCMC | 1 cut(s) | 223 |
| BstUI | CGCG | 1 cut(s) | 297 |
| BstV1I | GCAGC | 1 cut(s) | 133 |
| BsuRI | GGCC | 3 cut(s) | 131, 173, 221 |
| BtsCI | GGATG | 1 cut(s) | 157 |
| BveI | ACCTGC | 1 cut(s) | 103 |
| CaiI | CAGNNNCTG | 1 cut(s) | 133 |
| CfoI | GCGC | 2 cut(s) | 41, 297 |
| Cfr13I | GGNCC | 4 cut(s) | 130, 171, 219, 220 |
| Csp6I | GTAC | 1 cut(s) | 155 |
| CviAII | CATG | 1 cut(s) | 179 |
| CviQI | GTAC | 1 cut(s) | 155 |
| DinI | GGCGCC | 1 cut(s) | 40 |
| DpnI | GATC | 1 cut(s) | 45 |
| DpnII | GATC | 1 cut(s) | 43 |
| Eco24I | GRGCYC | 3 cut(s) | 193, 223, 236 |
| Eco91I | GGTNACC | 2 cut(s) | 19, 74 |
| EcoO109I | RGGNCCY | 1 cut(s) | 130 |
| EcoO65I | GGTNACC | 2 cut(s) | 19, 74 |
| EcoRII | CCWGG | 2 cut(s) | 173, 240 |
| EcoT38I | GRGCYC | 3 cut(s) | 193, 223, 236 |
| EgeI | GGCGCC | 1 cut(s) | 40 |
| EheI | GGCGCC | 1 cut(s) | 40 |
| Esp3I | CGTCTC | 1 cut(s) | 44 |
| FaeI | CATG | 1 cut(s) | 182 |
| FaiI | YATR | 3 cut(s) | 180, 323, 325 |
| FaqI | GGGAC | 1 cut(s) | 300 |
| FatI | CATG | 1 cut(s) | 178 |
| FauNDI | CATATG | 1 cut(s) | 323 |
| Fnu4HI | GCNGC | 3 cut(s) | 95, 122, 137 |
| FokI | GGATG | 1 cut(s) | 164 |
| FriOI | GRGCYC | 3 cut(s) | 193, 223, 236 |
| Fsp4HI | GCNGC | 3 cut(s) | 95, 122, 137 |
| FspBI | CTAG | 3 cut(s) | 47, 204, 260 |
| GlaI | GCGC | 2 cut(s) | 40, 296 |
| GluI | GCNGC | 3 cut(s) | 95, 122, 137 |
| GsaI | CCCAGC | 3 cut(s) | 67, 167, 190 |
| HaeII | RGCGCY | 1 cut(s) | 42 |
| HaeIII | GGCC | 3 cut(s) | 131, 173, 221 |
| HapII | CCGG | 2 cut(s) | 24, 79 |
| HhaI | GCGC | 2 cut(s) | 41, 297 |
| Hin1I | GRCGYC | 1 cut(s) | 39 |
| Hin1II | CATG | 1 cut(s) | 182 |
| Hin6I | GCGC | 2 cut(s) | 39, 295 |
| HinP1I | GCGC | 2 cut(s) | 39, 295 |
| HincII | GTYRAC | 2 cut(s) | 30, 85 |
| HindII | GTYRAC | 2 cut(s) | 30, 85 |
| HpaII | CCGG | 2 cut(s) | 24, 79 |
| HphI | GGTGA | 2 cut(s) | 31, 86 |
| Hpy166II | GTNNAC | 2 cut(s) | 30, 85 |
| Hpy188III | TCNNGA | 1 cut(s) | 47 |
| Hpy8I | GTNNAC | 2 cut(s) | 30, 85 |
| HpyAV | CCTTC | 1 cut(s) | 53 |
| HpyCH4V | TGCA | 2 cut(s) | 112, 121 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 118, 197, 206, 301 |
| Hsp92I | GRCGYC | 1 cut(s) | 39 |
| Hsp92II | CATG | 1 cut(s) | 182 |
| HspAI | GCGC | 2 cut(s) | 39, 295 |
| KasI | GGCGCC | 1 cut(s) | 38 |
| Kzo9I | GATC | 1 cut(s) | 43 |
| Lsp1109I | GCAGC | 1 cut(s) | 133 |
| MaeI | CTAG | 3 cut(s) | 47, 204, 260 |
| MaeIII | GTNAC | 2 cut(s) | 19, 74 |
| MalI | GATC | 1 cut(s) | 45 |
| MboI | GATC | 1 cut(s) | 43 |
| MhlI | GDGCHC | 3 cut(s) | 193, 223, 236 |
| Mly113I | GGCGCC | 1 cut(s) | 39 |
| MnlI | CCTC | 1 cut(s) | 49 |
| MspI | CCGG | 2 cut(s) | 24, 79 |
| MspR9I | CCNGG | 4 cut(s) | 25, 80, 175, 242 |
| MvaI | CCWGG | 2 cut(s) | 175, 242 |
| MvnI | CGCG | 1 cut(s) | 297 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 118, 197, 206, 301 |
| NarI | GGCGCC | 1 cut(s) | 39 |
| NciI | CCSGG | 2 cut(s) | 25, 80 |
| NdeI | CATATG | 1 cut(s) | 323 |
| NdeII | GATC | 1 cut(s) | 43 |
| NlaIII | CATG | 1 cut(s) | 182 |
| NlaIV | GGNNCC | 2 cut(s) | 40, 221 |
| NmuCI | GTSAC | 2 cut(s) | 19, 74 |
| NspI | RCATGY | 1 cut(s) | 182 |
| PaqCI | CACCTGC | 1 cut(s) | 103 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 229 |
| PkrI | GCNGC | 3 cut(s) | 96, 123, 138 |
| PluTI | GGCGCC | 1 cut(s) | 42 |
| Psp6I | CCWGG | 2 cut(s) | 173, 240 |
| PspEI | GGTNACC | 2 cut(s) | 19, 74 |
| PspFI | CCCAGC | 3 cut(s) | 63, 163, 186 |
| PspGI | CCWGG | 2 cut(s) | 173, 240 |
| PspN4I | GGNNCC | 2 cut(s) | 40, 221 |
| PspOMI | GGGCCC | 1 cut(s) | 219 |
| PspPI | GGNCC | 4 cut(s) | 130, 171, 219, 220 |
| PstNI | CAGNNNCTG | 1 cut(s) | 133 |
| RsaI | GTAC | 1 cut(s) | 156 |
| RsaNI | GTAC | 1 cut(s) | 155 |
| SatI | GCNGC | 3 cut(s) | 95, 122, 137 |
| Sau3AI | GATC | 1 cut(s) | 43 |
| Sau96I | GGNCC | 4 cut(s) | 130, 171, 219, 220 |
| ScrFI | CCNGG | 4 cut(s) | 25, 80, 175, 242 |
| SduI | GDGCHC | 3 cut(s) | 193, 223, 236 |
| SetI | ASST | 2 cut(s) | 117, 165 |
| SfoI | GGCGCC | 1 cut(s) | 40 |
| SsiI | CCGC | 3 cut(s) | 8, 94, 136 |
| SspDI | GGCGCC | 1 cut(s) | 38 |
| SspMI | CTAG | 3 cut(s) | 47, 204, 260 |
| StyD4I | CCNGG | 4 cut(s) | 23, 78, 173, 240 |
| TauI | GCSGC | 2 cut(s) | 97, 139 |
| TseFI | GTSAC | 2 cut(s) | 19, 74 |
| TseI | GCWGC | 1 cut(s) | 121 |
| Tsp45I | GTSAC | 2 cut(s) | 19, 74 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 68 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 229 |
| XbaI | TCTAGA | 1 cut(s) | 46 |
| XceI | RCATGY | 1 cut(s) | 182 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 165 |
| XspI | CTAG | 3 cut(s) | 47, 204, 260 |