BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 1490 |
| AccI | GTMKAC | 2 cut(s) | 521, 951 |
| AccII | CGCG | 1 cut(s) | 256 |
| AciI | CCGC | 5 cut(s) | 254, 256, 320, 869, 1220 |
| AclWI | GGATC | 3 cut(s) | 182, 1160, 1173 |
| AcoI | YGGCCR | 1 cut(s) | 1533 |
| AcsI | RAATTY | 8 cut(s) | 42, 64, 290, 332, 344, 832, 1041, 1193 |
| AcuI | CTGAAG | 2 cut(s) | 867, 1365 |
| AdeI | CACNNNGTG | 1 cut(s) | 1289 |
| AfaI | GTAC | 3 cut(s) | 179, 1312, 1576 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 401, 1057 |
| AflII | CTTAAG | 1 cut(s) | 500 |
| AflIII | ACRYGT | 1 cut(s) | 1363 |
| AgsI | TTSAA | 7 cut(s) | 215, 274, 665, 932, 986, 1105, 1417 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 82, 114 |
| AleI | CACNNNNGTG | 2 cut(s) | 486, 737 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1118, 1150 |
| Alw21I | GWGCWC | 3 cut(s) | 56, 1484, 1648 |
| Alw26I | GTCTC | 1 cut(s) | 1662 |
| AlwI | GGATC | 3 cut(s) | 182, 1160, 1173 |
| AoxI | GGCC | 5 cut(s) | 77, 514, 1254, 1533, 1586 |
| ApaI | GGGCCC | 1 cut(s) | 518 |
| ApeKI | GCWGC | 4 cut(s) | 137, 1157, 1238, 1241 |
| ApoI | RAATTY | 8 cut(s) | 42, 64, 290, 332, 344, 832, 1041, 1193 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1253, 1285 |
| AseI | ATTAAT | 1 cut(s) | 612 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 156 |
| AspA2I | CCTAGG | 1 cut(s) | 1661 |
| AspLEI | GCGC | 2 cut(s) | 167, 478 |
| AspS9I | GGNCC | 5 cut(s) | 77, 514, 515, 1254, 1580 |
| AsuHPI | GGTGA | 2 cut(s) | 1013, 1039 |
| AvaII | GGWCC | 1 cut(s) | 1580 |
| AvrII | CCTAGG | 1 cut(s) | 1661 |
| AxyI | CCTNAGG | 1 cut(s) | 912 |
| BaeGI | GKGCMC | 1 cut(s) | 518 |
| BalI | TGGCCA | 1 cut(s) | 1535 |
| BamHI | GGATCC | 1 cut(s) | 1165 |
| BanI | GGYRCC | 1 cut(s) | 1490 |
| BanII | GRGCYC | 1 cut(s) | 518 |
| BauI | CACGAG | 2 cut(s) | 486, 1521 |
| Bbv12I | GWGCWC | 3 cut(s) | 56, 1484, 1648 |
| BbvCI | CCTCAGC | 1 cut(s) | 132 |
| BbvI | GCAGC | 4 cut(s) | 149, 1169, 1225, 1253 |
| BccI | CCATC | 3 cut(s) | 344, 846, 1217 |
| BciVI | GTATCC | 1 cut(s) | 1509 |
| BcoDI | GTCTC | 1 cut(s) | 1662 |
| BfaI | CTAG | 4 cut(s) | 18, 111, 396, 1662 |
| BfmI | CTRYAG | 3 cut(s) | 1155, 1239, 1485 |
| BfoI | RGCGCY | 1 cut(s) | 479 |
| BfrI | CTTAAG | 1 cut(s) | 500 |
| BfuI | GTATCC | 1 cut(s) | 1509 |
| BisI | GCNGC | 4 cut(s) | 138, 1158, 1239, 1242 |
| BlnI | CCTAGG | 1 cut(s) | 1661 |
| BlpI | GCTNAGC | 1 cut(s) | 141 |
| BlsI | GCNGC | 4 cut(s) | 139, 1159, 1240, 1243 |
| BmcAI | AGTACT | 1 cut(s) | 1576 |
| Bme18I | GGWCC | 1 cut(s) | 1580 |
| BmgT120I | GGNCC | 5 cut(s) | 77, 514, 515, 1254, 1580 |
| BmiI | GGNNCC | 5 cut(s) | 117, 516, 1167, 1255, 1492 |
| BmsI | GCATC | 4 cut(s) | 118, 679, 1003, 1064 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 1642 |
| BpmI | CTGGAG | 1 cut(s) | 875 |
| Bpu10I | CCTNAGC | 1 cut(s) | 132 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 141 |
| BpuEI | CTTGAG | 1 cut(s) | 587 |
| BsaI | GGTCTC | 1 cut(s) | 1662 |
| BsaJI | CCNNGG | 5 cut(s) | 254, 1169, 1445, 1583, 1661 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 848, 878 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 401, 1057 |
| Bse1I | ACTGG | 2 cut(s) | 1541, 1582 |
| Bse21I | CCTNAGG | 1 cut(s) | 912 |
| Bse3DI | GCAATG | 1 cut(s) | 180 |
| BseDI | CCNNGG | 5 cut(s) | 254, 1169, 1445, 1583, 1661 |
| BseGI | GGATG | 2 cut(s) | 84, 1228 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 401, 1057 |
| BseMI | GCAATG | 1 cut(s) | 180 |
| BseMII | CTCAG | 5 cut(s) | 123, 132, 165, 707, 903 |
| BseNI | ACTGG | 2 cut(s) | 1541, 1582 |
| BseRI | GAGGAG | 1 cut(s) | 584 |
| BseSI | GKGCMC | 1 cut(s) | 518 |
| BseXI | GCAGC | 4 cut(s) | 149, 1169, 1225, 1253 |
| BsgI | GTGCAG | 1 cut(s) | 761 |
| Bsh1236I | CGCG | 1 cut(s) | 256 |
| BshFI | GGCC | 5 cut(s) | 79, 516, 1256, 1535, 1588 |
| BshNI | GGYRCC | 1 cut(s) | 1490 |
| BsiHKAI | GWGCWC | 3 cut(s) | 56, 1484, 1648 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 401, 1057 |
| BsmAI | GTCTC | 1 cut(s) | 1662 |
| BsmI | GAATGC | 1 cut(s) | 1568 |
| BsnI | GGCC | 5 cut(s) | 79, 516, 1256, 1535, 1588 |
| Bso31I | GGTCTC | 1 cut(s) | 1662 |
| Bsp120I | GGGCCC | 1 cut(s) | 514 |
| Bsp1286I | GDGCHC | 4 cut(s) | 56, 518, 1484, 1648 |
| Bsp1407I | TGTACA | 1 cut(s) | 1310 |
| Bsp143I | GATC | 4 cut(s) | 187, 631, 945, 1165 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 141 |
| BspACI | CCGC | 5 cut(s) | 254, 256, 320, 869, 1220 |
| BspANI | GGCC | 5 cut(s) | 79, 516, 1256, 1535, 1588 |
| BspCNI | CTCAG | 5 cut(s) | 124, 133, 166, 706, 904 |
| BspFNI | CGCG | 1 cut(s) | 256 |
| BspHI | TCATGA | 1 cut(s) | 1036 |
| BspLI | GGNNCC | 5 cut(s) | 117, 516, 1167, 1255, 1492 |
| BspMAI | CTGCAG | 3 cut(s) | 1159, 1243, 1489 |
| BspPI | GGATC | 3 cut(s) | 182, 1160, 1173 |
| BspT107I | GGYRCC | 1 cut(s) | 1490 |
| BspTI | CTTAAG | 1 cut(s) | 500 |
| BspTNI | GGTCTC | 1 cut(s) | 1662 |
| BsrDI | GCAATG | 1 cut(s) | 180 |
| BsrGI | TGTACA | 1 cut(s) | 1310 |
| BsrI | ACTGG | 2 cut(s) | 1541, 1582 |
| BssECI | CCNNGG | 5 cut(s) | 254, 1169, 1445, 1583, 1661 |
| BssMI | GATC | 4 cut(s) | 187, 631, 945, 1165 |
| BssSI | CACGAG | 2 cut(s) | 486, 1521 |
| BssT1I | CCWWGG | 3 cut(s) | 1445, 1583, 1661 |
| Bst2BI | CACGAG | 2 cut(s) | 486, 1521 |
| Bst4CI | ACNGT | 3 cut(s) | 526, 1087, 1310 |
| Bst6I | CTCTTC | 1 cut(s) | 886 |
| BstAFI | CTTAAG | 1 cut(s) | 500 |
| BstAUI | TGTACA | 1 cut(s) | 1310 |
| BstC8I | GCNNGC | 4 cut(s) | 1489, 1551, 1590, 1632 |
| BstDEI | CTNAG | 6 cut(s) | 132, 141, 174, 693, 912, 1508 |
| BstDSI | CCRYGG | 1 cut(s) | 254 |
| BstF5I | GGATG | 2 cut(s) | 84, 1228 |
| BstFNI | CGCG | 1 cut(s) | 256 |
| BstH2I | RGCGCY | 1 cut(s) | 479 |
| BstHHI | GCGC | 2 cut(s) | 167, 478 |
| BstKTI | GATC | 4 cut(s) | 190, 634, 948, 1168 |
| BstMAI | GTCTC | 1 cut(s) | 1662 |
| BstMBI | GATC | 4 cut(s) | 187, 631, 945, 1165 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 137, 253, 262, 1488 |
| BstNSI | RCATGY | 2 cut(s) | 1367, 1634 |
| BstSFI | CTRYAG | 3 cut(s) | 1155, 1239, 1485 |
| BstSLI | GKGCMC | 1 cut(s) | 518 |
| BstUI | CGCG | 1 cut(s) | 256 |
| BstV1I | GCAGC | 4 cut(s) | 149, 1169, 1225, 1253 |
| BstX2I | RGATCY | 1 cut(s) | 1165 |
| BstYI | RGATCY | 1 cut(s) | 1165 |
| Bsu36I | CCTNAGG | 1 cut(s) | 912 |
| BsuI | GTATCC | 1 cut(s) | 1509 |
| BsuRI | GGCC | 5 cut(s) | 79, 516, 1256, 1535, 1588 |
| BtgI | CCRYGG | 1 cut(s) | 254 |
| BtsCI | GGATG | 2 cut(s) | 84, 1228 |
| BtsI | GCAGTG | 2 cut(s) | 1482, 1625 |
| BtsIMutI | CAGTG | 3 cut(s) | 891, 1482, 1625 |
| Cac8I | GCNNGC | 4 cut(s) | 1489, 1551, 1590, 1632 |
| CciI | TCATGA | 1 cut(s) | 1036 |
| CfoI | GCGC | 2 cut(s) | 167, 478 |
| Cfr13I | GGNCC | 5 cut(s) | 77, 514, 515, 1254, 1580 |
| Cfr42I | CCGCGG | 1 cut(s) | 257 |
| Csp6I | GTAC | 3 cut(s) | 178, 1311, 1575 |
| CviAII | CATG | 6 cut(s) | 386, 1028, 1037, 1364, 1612, 1631 |
| CviQI | GTAC | 3 cut(s) | 178, 1311, 1575 |
| DdeI | CTNAG | 6 cut(s) | 132, 141, 174, 693, 912, 1508 |
| DpnI | GATC | 4 cut(s) | 189, 633, 947, 1167 |
| DpnII | GATC | 4 cut(s) | 187, 631, 945, 1165 |
| DraI | TTTAAA | 1 cut(s) | 1177 |
| DraIII | CACNNNGTG | 1 cut(s) | 1289 |
| EaeI | YGGCCR | 1 cut(s) | 1533 |
| Eam1104I | CTCTTC | 1 cut(s) | 886 |
| EarI | CTCTTC | 1 cut(s) | 886 |
| EciI | GGCGGA | 1 cut(s) | 1235 |
| Eco130I | CCWWGG | 3 cut(s) | 1445, 1583, 1661 |
| Eco24I | GRGCYC | 1 cut(s) | 518 |
| Eco31I | GGTCTC | 1 cut(s) | 1662 |
| Eco32I | GATATC | 1 cut(s) | 594 |
| Eco47I | GGWCC | 1 cut(s) | 1580 |
| Eco57I | CTGAAG | 2 cut(s) | 867, 1365 |
| Eco81I | CCTNAGG | 1 cut(s) | 912 |
| EcoRI | GAATTC | 3 cut(s) | 64, 290, 332 |
| EcoRV | GATATC | 1 cut(s) | 594 |
| EcoT14I | CCWWGG | 3 cut(s) | 1445, 1583, 1661 |
| EcoT38I | GRGCYC | 1 cut(s) | 518 |
| ErhI | CCWWGG | 3 cut(s) | 1445, 1583, 1661 |
| FaeI | CATG | 6 cut(s) | 389, 1031, 1040, 1367, 1615, 1634 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 320, 352 |
| FatI | CATG | 6 cut(s) | 385, 1027, 1036, 1363, 1611, 1630 |
| FauI | CCCGC | 3 cut(s) | 261, 313, 862 |
| FblI | GTMKAC | 2 cut(s) | 521, 951 |
| Fnu4HI | GCNGC | 4 cut(s) | 138, 1158, 1239, 1242 |
| FokI | GGATG | 2 cut(s) | 71, 1235 |
| FriOI | GRGCYC | 1 cut(s) | 518 |
| Fsp4HI | GCNGC | 4 cut(s) | 138, 1158, 1239, 1242 |
| FspBI | CTAG | 4 cut(s) | 18, 111, 396, 1662 |
| GlaI | GCGC | 2 cut(s) | 166, 477 |
| GluI | GCNGC | 4 cut(s) | 138, 1158, 1239, 1242 |
| GsuI | CTGGAG | 1 cut(s) | 875 |
| HaeII | RGCGCY | 1 cut(s) | 479 |
| HaeIII | GGCC | 5 cut(s) | 79, 516, 1256, 1535, 1588 |
| HhaI | GCGC | 2 cut(s) | 167, 478 |
| Hin1II | CATG | 6 cut(s) | 389, 1031, 1040, 1367, 1615, 1634 |
| Hin6I | GCGC | 2 cut(s) | 165, 476 |
| HinP1I | GCGC | 2 cut(s) | 165, 476 |
| HincII | GTYRAC | 2 cut(s) | 889, 1063 |
| HindII | GTYRAC | 2 cut(s) | 889, 1063 |
| HindIII | AAGCTT | 1 cut(s) | 1107 |
| HinfI | GANTC | 6 cut(s) | 655, 678, 1064, 1319, 1340, 1369 |
| HphI | GGTGA | 2 cut(s) | 1013, 1039 |
| Hpy166II | GTNNAC | 7 cut(s) | 522, 889, 952, 1063, 1306, 1407, 1609 |
| Hpy188I | TCNGA | 8 cut(s) | 103, 162, 999, 1069, 1297, 1339, 1345, 1650 |
| Hpy188III | TCNNGA | 9 cut(s) | 61, 191, 212, 665, 854, 1037, 1163, 1427, 1523 |
| Hpy8I | GTNNAC | 7 cut(s) | 522, 889, 952, 1063, 1306, 1407, 1609 |
| Hpy99I | CGWCG | 1 cut(s) | 1193 |
| HpyAV | CCTTC | 6 cut(s) | 81, 209, 218, 667, 926, 1340 |
| HpyCH4III | ACNGT | 3 cut(s) | 526, 1087, 1310 |
| HpyCH4IV | ACGT | 1 cut(s) | 1188 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 137, 253, 262, 1488 |
| HpyF3I | CTNAG | 6 cut(s) | 132, 141, 174, 693, 912, 1508 |
| HpySE526I | ACGT | 1 cut(s) | 1188 |
| Hsp92II | CATG | 6 cut(s) | 389, 1031, 1040, 1367, 1615, 1634 |
| HspAI | GCGC | 2 cut(s) | 165, 476 |
| KspI | CCGCGG | 1 cut(s) | 257 |
| Kzo9I | GATC | 4 cut(s) | 187, 631, 945, 1165 |
| LmnI | GCTCC | 2 cut(s) | 1479, 1650 |
| Lsp1109I | GCAGC | 4 cut(s) | 149, 1169, 1225, 1253 |
| LweI | GCATC | 4 cut(s) | 118, 679, 1003, 1064 |
| MaeI | CTAG | 4 cut(s) | 18, 111, 396, 1662 |
| MaeII | ACGT | 1 cut(s) | 1188 |
| MaeIII | GTNAC | 2 cut(s) | 826, 1386 |
| MalI | GATC | 4 cut(s) | 189, 633, 947, 1167 |
| MboI | GATC | 4 cut(s) | 187, 631, 945, 1165 |
| MboII | GAAGA | 8 cut(s) | 243, 598, 601, 664, 873, 934, 1194, 1442 |
| MfeI | CAATTG | 2 cut(s) | 635, 1412 |
| MflI | RGATCY | 1 cut(s) | 1165 |
| MhlI | GDGCHC | 4 cut(s) | 56, 518, 1484, 1648 |
| MlsI | TGGCCA | 1 cut(s) | 1535 |
| MluNI | TGGCCA | 1 cut(s) | 1535 |
| MlyI | GAGTC | 1 cut(s) | 1058 |
| MmeI | TCCRAC | 2 cut(s) | 202, 706 |
| Mox20I | TGGCCA | 1 cut(s) | 1535 |
| MroXI | GAANNNNTTC | 1 cut(s) | 156 |
| MscI | TGGCCA | 1 cut(s) | 1535 |
| MslI | CAYNNNNRTG | 3 cut(s) | 486, 737, 1026 |
| Msp20I | TGGCCA | 1 cut(s) | 1535 |
| MspA1I | CMGCKG | 5 cut(s) | 140, 256, 869, 1244, 1592 |
| MspCI | CTTAAG | 1 cut(s) | 500 |
| MunI | CAATTG | 2 cut(s) | 635, 1412 |
| Mva1269I | GAATGC | 1 cut(s) | 1568 |
| MvnI | CGCG | 1 cut(s) | 256 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 137, 253, 262, 1488 |
| NdeII | GATC | 4 cut(s) | 187, 631, 945, 1165 |
| NlaIII | CATG | 6 cut(s) | 389, 1031, 1040, 1367, 1615, 1634 |
| NlaIV | GGNNCC | 5 cut(s) | 117, 516, 1167, 1255, 1492 |
| NmuCI | GTSAC | 1 cut(s) | 826 |
| NspI | RCATGY | 2 cut(s) | 1367, 1634 |
| OliI | CACNNNNGTG | 2 cut(s) | 486, 737 |
| PaeI | GCATGC | 1 cut(s) | 1634 |
| PagI | TCATGA | 1 cut(s) | 1036 |
| PciI | ACATGT | 1 cut(s) | 1363 |
| PctI | GAATGC | 1 cut(s) | 1568 |
| PdmI | GAANNNNTTC | 1 cut(s) | 156 |
| PfeI | GAWTC | 5 cut(s) | 655, 678, 1319, 1340, 1369 |
| PkrI | GCNGC | 4 cut(s) | 139, 1159, 1240, 1243 |
| PleI | GAGTC | 1 cut(s) | 1058 |
| PpsI | GAGTC | 1 cut(s) | 1058 |
| PscI | ACATGT | 1 cut(s) | 1363 |
| PshBI | ATTAAT | 1 cut(s) | 612 |
| PspN4I | GGNNCC | 5 cut(s) | 117, 516, 1167, 1255, 1492 |
| PspOMI | GGGCCC | 1 cut(s) | 514 |
| PspPI | GGNCC | 5 cut(s) | 77, 514, 515, 1254, 1580 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1425, 1457 |
| PstI | CTGCAG | 3 cut(s) | 1159, 1243, 1489 |
| PsuI | RGATCY | 1 cut(s) | 1165 |
| PvuII | CAGCTG | 3 cut(s) | 140, 1244, 1592 |
| RsaI | GTAC | 3 cut(s) | 179, 1312, 1576 |
| RsaNI | GTAC | 3 cut(s) | 178, 1311, 1575 |
| RseI | CAYNNNNRTG | 3 cut(s) | 486, 737, 1026 |
| SacII | CCGCGG | 1 cut(s) | 257 |
| SatI | GCNGC | 4 cut(s) | 138, 1158, 1239, 1242 |
| Sau3AI | GATC | 4 cut(s) | 187, 631, 945, 1165 |
| Sau96I | GGNCC | 5 cut(s) | 77, 514, 515, 1254, 1580 |
| ScaI | AGTACT | 1 cut(s) | 1576 |
| SchI | GAGTC | 1 cut(s) | 1058 |
| SduI | GDGCHC | 4 cut(s) | 56, 518, 1484, 1648 |
| SfaNI | GCATC | 4 cut(s) | 118, 679, 1003, 1064 |
| SfcI | CTRYAG | 3 cut(s) | 1155, 1239, 1485 |
| Sfr303I | CCGCGG | 1 cut(s) | 257 |
| SgrBI | CCGCGG | 1 cut(s) | 257 |
| SinI | GGWCC | 1 cut(s) | 1580 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 486, 737, 1026 |
| SmlI | CTYRAG | 2 cut(s) | 500, 566 |
| SmoI | CTYRAG | 2 cut(s) | 500, 566 |
| SphI | GCATGC | 1 cut(s) | 1634 |
| SsiI | CCGC | 5 cut(s) | 254, 256, 320, 869, 1220 |
| SspMI | CTAG | 4 cut(s) | 18, 111, 396, 1662 |
| StyI | CCWWGG | 3 cut(s) | 1445, 1583, 1661 |
| TaaI | ACNGT | 3 cut(s) | 526, 1087, 1310 |
| TaiI | ACGT | 1 cut(s) | 1191 |
| TaqI | TCGA | 1 cut(s) | 1191 |
| TatI | WGTACW | 3 cut(s) | 177, 1310, 1574 |
| TfiI | GAWTC | 5 cut(s) | 655, 678, 1319, 1340, 1369 |
| TscAI | CASTG | 3 cut(s) | 898, 1489, 1632 |
| TseFI | GTSAC | 1 cut(s) | 826 |
| TseI | GCWGC | 4 cut(s) | 137, 1157, 1238, 1241 |
| Tsp45I | GTSAC | 1 cut(s) | 826 |
| TspDTI | ATGAA | 8 cut(s) | 36, 402, 978, 1025, 1053, 1196, 1290, 1628 |
| TspGWI | ACGGA | 1 cut(s) | 1277 |
| TspRI | CASTG | 3 cut(s) | 898, 1489, 1632 |
| Vha464I | CTTAAG | 1 cut(s) | 500 |
| VpaK11BI | GGWCC | 1 cut(s) | 1580 |
| VspI | ATTAAT | 1 cut(s) | 612 |
| XapI | RAATTY | 8 cut(s) | 42, 64, 290, 332, 344, 832, 1041, 1193 |
| XceI | RCATGY | 2 cut(s) | 1367, 1634 |
| XmaJI | CCTAGG | 1 cut(s) | 1661 |
| XmiI | GTMKAC | 2 cut(s) | 521, 951 |
| XmnI | GAANNNNTTC | 1 cut(s) | 156 |
| XspI | CTAG | 4 cut(s) | 18, 111, 396, 1662 |
| ZrmI | AGTACT | 1 cut(s) | 1576 |