Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-MYND | PF01753 | 11 - 49 | 6.2e-11 | MYND finger |
| zf-BED | PF02892 | 255 - 309 | 2.2e-06 | BED zinc finger |
| hAT-like_RNase-H | PF14372 | 646 - 750 | 8.6e-21 | hAT-like transposase, RNase-H fold |
| Dimer_Tnp_hAT | PF05699 | 804 - 887 | 2.2e-26 | hAT family C-terminal dimerisation region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2326 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 222 |
| Acc36I | ACCTGC | 1 cut(s) | 2326 |
| Acc65I | GGTACC | 2 cut(s) | 957, 2499 |
| AccB1I | GGYRCC | 2 cut(s) | 957, 2499 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 283, 514 |
| AciI | CCGC | 4 cut(s) | 105, 975, 1474, 1883 |
| AclWI | GGATC | 7 cut(s) | 1007, 1252, 1522, 2123, 2136, 2255, 2591 |
| AcsI | RAATTY | 2 cut(s) | 523, 2103 |
| AcuI | CTGAAG | 2 cut(s) | 359, 999 |
| AdeI | CACNNNGTG | 1 cut(s) | 1725 |
| AfaI | GTAC | 8 cut(s) | 92, 372, 935, 959, 1803, 2159, 2501, 2687 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 118, 283, 514, 2032 |
| AflIII | ACRYGT | 2 cut(s) | 306, 2389 |
| AjnI | CCWGG | 2 cut(s) | 858, 1087 |
| AleI | CACNNNNGTG | 1 cut(s) | 471 |
| Alw21I | GWGCWC | 3 cut(s) | 74, 1985, 2317 |
| Alw26I | GTCTC | 4 cut(s) | 143, 209, 306, 943 |
| Alw44I | GTGCAC | 2 cut(s) | 1981, 2313 |
| AlwI | GGATC | 7 cut(s) | 1007, 1252, 1522, 2123, 2136, 2255, 2591 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2270 |
| AoxI | GGCC | 3 cut(s) | 380, 1853, 2289 |
| ApaLI | GTGCAC | 2 cut(s) | 1981, 2313 |
| ApoI | RAATTY | 2 cut(s) | 523, 2103 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 26, 58, 1790, 1822 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1775 |
| Asp718I | GGTACC | 2 cut(s) | 957, 2499 |
| AspA2I | CCTAGG | 1 cut(s) | 2495 |
| AspS9I | GGNCC | 1 cut(s) | 1853 |
| AsuNHI | GCTAGC | 1 cut(s) | 1442 |
| AvrII | CCTAGG | 1 cut(s) | 2495 |
| BaeGI | GKGCMC | 2 cut(s) | 1985, 2317 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 362, 395, 941, 974, 2483, 2516 |
| BamHI | GGATCC | 1 cut(s) | 2128 |
| BanI | GGYRCC | 2 cut(s) | 957, 2499 |
| BanII | GRGCYC | 1 cut(s) | 2697 |
| BbsI | GAAGAC | 5 cut(s) | 2097, 2187, 2343, 2448, 2742 |
| Bbv12I | GWGCWC | 3 cut(s) | 74, 1985, 2317 |
| BbvCI | CCTCAGC | 1 cut(s) | 642 |
| BceAI | ACGGC | 1 cut(s) | 1971 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2429, 2463 |
| BciT130I | CCWGG | 2 cut(s) | 860, 1089 |
| BciVI | GTATCC | 2 cut(s) | 495, 1337 |
| BclI | TGATCA | 2 cut(s) | 210, 538 |
| BcoDI | GTCTC | 4 cut(s) | 143, 209, 306, 943 |
| BfaI | CTAG | 6 cut(s) | 825, 1041, 1443, 1502, 2496, 2639 |
| BfuAI | ACCTGC | 1 cut(s) | 2326 |
| BfuI | GTATCC | 2 cut(s) | 495, 1337 |
| BglII | AGATCT | 1 cut(s) | 1908 |
| BlnI | CCTAGG | 1 cut(s) | 2495 |
| BmcAI | AGTACT | 1 cut(s) | 2159 |
| Bme1390I | CCNGG | 2 cut(s) | 860, 1089 |
| BmgT120I | GGNCC | 1 cut(s) | 1853 |
| BmiI | GGNNCC | 4 cut(s) | 165, 959, 2130, 2501 |
| BmrFI | CCNGG | 2 cut(s) | 860, 1089 |
| BmtI | GCTAGC | 1 cut(s) | 1446 |
| BpiI | GAAGAC | 5 cut(s) | 2097, 2187, 2343, 2448, 2742 |
| BpmI | CTGGAG | 3 cut(s) | 639, 745, 2174 |
| Bpu10I | CCTNAGC | 1 cut(s) | 642 |
| BpuEI | CTTGAG | 3 cut(s) | 678, 1656, 2259 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1173, 2259 |
| BsaJI | CCNNGG | 6 cut(s) | 159, 194, 1088, 1707, 2409, 2495 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 56, 86 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 118, 283, 514, 2032 |
| Bse3DI | GCAATG | 2 cut(s) | 2058, 2112 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1173, 2259 |
| BseBI | CCWGG | 2 cut(s) | 860, 1089 |
| BseDI | CCNNGG | 6 cut(s) | 159, 194, 1088, 1707, 2409, 2495 |
| BseJI | GATNNNNATC | 2 cut(s) | 1173, 2259 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 118, 283, 514, 2032 |
| BseMI | GCAATG | 2 cut(s) | 2058, 2112 |
| BseMII | CTCAG | 3 cut(s) | 519, 656, 2202 |
| BseRI | GAGGAG | 2 cut(s) | 642, 1592 |
| BseSI | GKGCMC | 2 cut(s) | 1985, 2317 |
| BseYI | CCCAGC | 2 cut(s) | 518, 2744 |
| BsgI | GTGCAG | 1 cut(s) | 2216 |
| BshFI | GGCC | 3 cut(s) | 382, 1855, 2291 |
| BshNI | GGYRCC | 2 cut(s) | 957, 2499 |
| BsiHKAI | GWGCWC | 3 cut(s) | 74, 1985, 2317 |
| BslFI | GGGAC | 2 cut(s) | 895, 912 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 118, 283, 514, 2032 |
| BsmAI | GTCTC | 4 cut(s) | 143, 209, 306, 943 |
| BsmBI | CGTCTC | 2 cut(s) | 143, 209 |
| BsmFI | GGGAC | 2 cut(s) | 895, 912 |
| BsmI | GAATGC | 4 cut(s) | 149, 428, 636, 2639 |
| BsnI | GGCC | 3 cut(s) | 382, 1855, 2291 |
| Bsp1286I | GDGCHC | 4 cut(s) | 74, 1985, 2317, 2697 |
| Bsp1407I | TGTACA | 1 cut(s) | 2685 |
| Bsp143I | GATC | 9 cut(s) | 210, 538, 1012, 1257, 1514, 1908, 2128, 2260, 2596 |
| BspACI | CCGC | 4 cut(s) | 105, 975, 1474, 1883 |
| BspANI | GGCC | 3 cut(s) | 382, 1855, 2291 |
| BspCNI | CTCAG | 3 cut(s) | 520, 655, 2203 |
| BspHI | TCATGA | 4 cut(s) | 207, 501, 1779, 2367 |
| BspLI | GGNNCC | 4 cut(s) | 165, 959, 2130, 2501 |
| BspMI | ACCTGC | 1 cut(s) | 2326 |
| BspOI | GCTAGC | 1 cut(s) | 1446 |
| BspPI | GGATC | 7 cut(s) | 1007, 1252, 1522, 2123, 2136, 2255, 2591 |
| BspT107I | GGYRCC | 2 cut(s) | 957, 2499 |
| BsrDI | GCAATG | 2 cut(s) | 2058, 2112 |
| BsrGI | TGTACA | 1 cut(s) | 2685 |
| BssECI | CCNNGG | 6 cut(s) | 159, 194, 1088, 1707, 2409, 2495 |
| BssMI | GATC | 9 cut(s) | 210, 538, 1012, 1257, 1514, 1908, 2128, 2260, 2596 |
| BssT1I | CCWWGG | 3 cut(s) | 159, 1707, 2495 |
| Bst2UI | CCWGG | 2 cut(s) | 860, 1089 |
| Bst4CI | ACNGT | 8 cut(s) | 88, 137, 483, 1125, 1613, 2312, 2554, 2672 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 904 |
| BstAUI | TGTACA | 1 cut(s) | 2685 |
| BstC8I | GCNNGC | 6 cut(s) | 109, 661, 909, 1444, 2611, 2712 |
| BstDEI | CTNAG | 6 cut(s) | 528, 642, 1026, 1207, 2211, 2660 |
| BstDSI | CCRYGG | 1 cut(s) | 194 |
| BstEII | GGTNACC | 2 cut(s) | 56, 2021 |
| BstKTI | GATC | 9 cut(s) | 213, 541, 1015, 1260, 1517, 1911, 2131, 2263, 2599 |
| BstMAI | GTCTC | 4 cut(s) | 143, 209, 306, 943 |
| BstMBI | GATC | 9 cut(s) | 210, 538, 1012, 1257, 1514, 1908, 2128, 2260, 2596 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 78, 350, 434, 695, 904, 1031, 2276, 2543, 2720 |
| BstNI | CCWGG | 2 cut(s) | 860, 1089 |
| BstNSI | RCATGY | 5 cut(s) | 310, 907, 1038, 2393, 2769 |
| BstPI | GGTNACC | 2 cut(s) | 56, 2021 |
| BstSCI | CCNGG | 2 cut(s) | 858, 1087 |
| BstSLI | GKGCMC | 2 cut(s) | 1985, 2317 |
| BstV2I | GAAGAC | 5 cut(s) | 2097, 2187, 2343, 2448, 2742 |
| BstX2I | RGATCY | 2 cut(s) | 1908, 2128 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1456, 1974, 2629 |
| BstYI | RGATCY | 2 cut(s) | 1908, 2128 |
| BsuI | GTATCC | 2 cut(s) | 495, 1337 |
| BsuRI | GGCC | 3 cut(s) | 382, 1855, 2291 |
| BtgI | CCRYGG | 1 cut(s) | 194 |
| BtsI | GCAGTG | 1 cut(s) | 414 |
| BtsIMutI | CAGTG | 4 cut(s) | 383, 414, 1184, 1239 |
| BveI | ACCTGC | 1 cut(s) | 2326 |
| Cac8I | GCNNGC | 6 cut(s) | 109, 661, 909, 1444, 2611, 2712 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2270 |
| CciI | TCATGA | 4 cut(s) | 207, 501, 1779, 2367 |
| Cfr13I | GGNCC | 1 cut(s) | 1853 |
| CseI | GACGC | 1 cut(s) | 44 |
| CsiI | ACCWGGT | 1 cut(s) | 858 |
| Csp6I | GTAC | 8 cut(s) | 91, 371, 934, 958, 1802, 2158, 2500, 2686 |
| CviQI | GTAC | 8 cut(s) | 91, 371, 934, 958, 1802, 2158, 2500, 2686 |
| DdeI | CTNAG | 6 cut(s) | 528, 642, 1026, 1207, 2211, 2660 |
| DpnI | GATC | 9 cut(s) | 212, 540, 1014, 1259, 1516, 1910, 2130, 2262, 2598 |
| DpnII | GATC | 9 cut(s) | 210, 538, 1012, 1257, 1514, 1908, 2128, 2260, 2596 |
| DraI | TTTAAA | 1 cut(s) | 231 |
| DraIII | CACNNNGTG | 1 cut(s) | 1725 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 222 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 222 |
| Eco130I | CCWWGG | 3 cut(s) | 159, 1707, 2495 |
| Eco24I | GRGCYC | 1 cut(s) | 2697 |
| Eco32I | GATATC | 1 cut(s) | 388 |
| Eco57I | CTGAAG | 2 cut(s) | 359, 999 |
| Eco91I | GGTNACC | 2 cut(s) | 56, 2021 |
| EcoO65I | GGTNACC | 2 cut(s) | 56, 2021 |
| EcoRI | GAATTC | 1 cut(s) | 523 |
| EcoRII | CCWGG | 2 cut(s) | 858, 1087 |
| EcoRV | GATATC | 1 cut(s) | 388 |
| EcoT14I | CCWWGG | 3 cut(s) | 159, 1707, 2495 |
| EcoT38I | GRGCYC | 1 cut(s) | 2697 |
| ErhI | CCWWGG | 3 cut(s) | 159, 1707, 2495 |
| Esp3I | CGTCTC | 2 cut(s) | 143, 209 |
| FaqI | GGGAC | 2 cut(s) | 895, 912 |
| FauI | CCCGC | 1 cut(s) | 1467 |
| FauNDI | CATATG | 2 cut(s) | 1009, 1527 |
| FbaI | TGATCA | 2 cut(s) | 210, 538 |
| FriOI | GRGCYC | 1 cut(s) | 2697 |
| FspBI | CTAG | 6 cut(s) | 825, 1041, 1443, 1502, 2496, 2639 |
| GsaI | CCCAGC | 2 cut(s) | 522, 2748 |
| GsuI | CTGGAG | 3 cut(s) | 639, 745, 2174 |
| HaeIII | GGCC | 3 cut(s) | 382, 1855, 2291 |
| HgaI | GACGC | 1 cut(s) | 44 |
| HincII | GTYRAC | 2 cut(s) | 1284, 2416 |
| HindII | GTYRAC | 2 cut(s) | 1284, 2416 |
| HindIII | AAGCTT | 5 cut(s) | 128, 150, 2277, 2611, 2735 |
| HinfI | GANTC | 8 cut(s) | 11, 50, 199, 216, 548, 971, 1385, 1862 |
| Hpy99I | CGWCG | 1 cut(s) | 38 |
| HpyAV | CCTTC | 8 cut(s) | 324, 448, 470, 624, 974, 1765, 2050, 2374 |
| HpyCH4III | ACNGT | 8 cut(s) | 88, 137, 483, 1125, 1613, 2312, 2554, 2672 |
| HpyCH4IV | ACGT | 1 cut(s) | 1800 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 78, 350, 434, 695, 904, 1031, 2276, 2543, 2720 |
| HpyF3I | CTNAG | 6 cut(s) | 528, 642, 1026, 1207, 2211, 2660 |
| HpySE526I | ACGT | 1 cut(s) | 1800 |
| KpnI | GGTACC | 2 cut(s) | 961, 2503 |
| Ksp22I | TGATCA | 2 cut(s) | 210, 538 |
| Kzo9I | GATC | 9 cut(s) | 210, 538, 1012, 1257, 1514, 1908, 2128, 2260, 2596 |
| LmnI | GCTCC | 1 cut(s) | 77 |
| MabI | ACCWGGT | 1 cut(s) | 858 |
| MaeI | CTAG | 6 cut(s) | 825, 1041, 1443, 1502, 2496, 2639 |
| MaeII | ACGT | 1 cut(s) | 1800 |
| MaeIII | GTNAC | 6 cut(s) | 56, 234, 595, 1951, 2021, 2206 |
| MalI | GATC | 9 cut(s) | 212, 540, 1014, 1259, 1516, 1910, 2130, 2262, 2598 |
| MboI | GATC | 9 cut(s) | 210, 538, 1012, 1257, 1514, 1908, 2128, 2260, 2596 |
| MfeI | CAATTG | 2 cut(s) | 1368, 1986 |
| MflI | RGATCY | 2 cut(s) | 1908, 2128 |
| MhlI | GDGCHC | 4 cut(s) | 74, 1985, 2317, 2697 |
| MlyI | GAGTC | 3 cut(s) | 5, 210, 1394 |
| MmeI | TCCRAC | 4 cut(s) | 99, 150, 1980, 2409 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1775 |
| MseI | TTAA | 7 cut(s) | 230, 567, 1128, 1551, 1563, 2324, 2615 |
| MslI | CAYNNNNRTG | 3 cut(s) | 471, 1692, 1972 |
| MspA1I | CMGCKG | 3 cut(s) | 646, 689, 977 |
| MspR9I | CCNGG | 2 cut(s) | 860, 1089 |
| MunI | CAATTG | 2 cut(s) | 1368, 1986 |
| Mva1269I | GAATGC | 4 cut(s) | 149, 428, 636, 2639 |
| MvaI | CCWGG | 2 cut(s) | 860, 1089 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 78, 350, 434, 695, 904, 1031, 2276, 2543, 2720 |
| NdeI | CATATG | 2 cut(s) | 1009, 1527 |
| NdeII | GATC | 9 cut(s) | 210, 538, 1012, 1257, 1514, 1908, 2128, 2260, 2596 |
| NheI | GCTAGC | 1 cut(s) | 1442 |
| NlaIV | GGNNCC | 4 cut(s) | 165, 959, 2130, 2501 |
| NmuCI | GTSAC | 2 cut(s) | 1951, 2021 |
| NspI | RCATGY | 5 cut(s) | 310, 907, 1038, 2393, 2769 |
| OliI | CACNNNNGTG | 1 cut(s) | 471 |
| PagI | TCATGA | 4 cut(s) | 207, 501, 1779, 2367 |
| PaqCI | CACCTGC | 1 cut(s) | 2326 |
| PciI | ACATGT | 2 cut(s) | 306, 2389 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1598 |
| PctI | GAATGC | 4 cut(s) | 149, 428, 636, 2639 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1775 |
| PfeI | GAWTC | 5 cut(s) | 50, 199, 548, 971, 1862 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 283, 514 |
| PleI | GAGTC | 3 cut(s) | 5, 210, 1393 |
| PpsI | GAGTC | 3 cut(s) | 5, 210, 1393 |
| PscI | ACATGT | 2 cut(s) | 306, 2389 |
| Psp6I | CCWGG | 2 cut(s) | 858, 1087 |
| PspEI | GGTNACC | 2 cut(s) | 56, 2021 |
| PspFI | CCCAGC | 2 cut(s) | 518, 2744 |
| PspGI | CCWGG | 2 cut(s) | 858, 1087 |
| PspN4I | GGNNCC | 4 cut(s) | 165, 959, 2130, 2501 |
| PspPI | GGNCC | 1 cut(s) | 1853 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1721, 1753 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2270 |
| PsuI | RGATCY | 2 cut(s) | 1908, 2128 |
| PvuII | CAGCTG | 2 cut(s) | 646, 689 |
| RsaI | GTAC | 8 cut(s) | 92, 372, 935, 959, 1803, 2159, 2501, 2687 |
| RsaNI | GTAC | 8 cut(s) | 91, 371, 934, 958, 1802, 2158, 2500, 2686 |
| RseI | CAYNNNNRTG | 3 cut(s) | 471, 1692, 1972 |
| SaqAI | TTAA | 7 cut(s) | 230, 567, 1128, 1551, 1563, 2324, 2615 |
| Sau3AI | GATC | 9 cut(s) | 210, 538, 1012, 1257, 1514, 1908, 2128, 2260, 2596 |
| Sau96I | GGNCC | 1 cut(s) | 1853 |
| ScaI | AGTACT | 1 cut(s) | 2159 |
| SchI | GAGTC | 3 cut(s) | 5, 210, 1394 |
| ScrFI | CCNGG | 2 cut(s) | 860, 1089 |
| SduI | GDGCHC | 4 cut(s) | 74, 1985, 2317, 2697 |
| SexAI | ACCWGGT | 1 cut(s) | 858 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 471, 1692, 1972 |
| SmlI | CTYRAG | 3 cut(s) | 693, 1671, 2274 |
| SmoI | CTYRAG | 3 cut(s) | 693, 1671, 2274 |
| SsiI | CCGC | 4 cut(s) | 105, 975, 1474, 1883 |
| SspI | AATATT | 1 cut(s) | 2356 |
| SspMI | CTAG | 6 cut(s) | 825, 1041, 1443, 1502, 2496, 2639 |
| StyD4I | CCNGG | 2 cut(s) | 858, 1087 |
| StyI | CCWWGG | 3 cut(s) | 159, 1707, 2495 |
| TaaI | ACNGT | 8 cut(s) | 88, 137, 483, 1125, 1613, 2312, 2554, 2672 |
| TaiI | ACGT | 1 cut(s) | 1803 |
| TaqI | TCGA | 5 cut(s) | 141, 311, 875, 1256, 1592 |
| TatI | WGTACW | 3 cut(s) | 90, 2157, 2685 |
| TfiI | GAWTC | 5 cut(s) | 50, 199, 548, 971, 1862 |
| Tru1I | TTAA | 7 cut(s) | 230, 567, 1128, 1551, 1563, 2324, 2615 |
| Tru9I | TTAA | 7 cut(s) | 230, 567, 1128, 1551, 1563, 2324, 2615 |
| TscAI | CASTG | 4 cut(s) | 383, 414, 1184, 1246 |
| TseFI | GTSAC | 2 cut(s) | 1951, 2021 |
| Tsp45I | GTSAC | 2 cut(s) | 1951, 2021 |
| TspGWI | ACGGA | 2 cut(s) | 156, 211 |
| TspRI | CASTG | 4 cut(s) | 383, 414, 1184, 1246 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 283, 514 |
| VneI | GTGCAC | 2 cut(s) | 1981, 2313 |
| XapI | RAATTY | 2 cut(s) | 523, 2103 |
| XceI | RCATGY | 5 cut(s) | 310, 907, 1038, 2393, 2769 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 166, 515 |
| XmaJI | CCTAGG | 1 cut(s) | 2495 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1775 |
| XspI | CTAG | 6 cut(s) | 825, 1041, 1443, 1502, 2496, 2639 |
| ZrmI | AGTACT | 1 cut(s) | 2159 |