BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 767 |
| AccI | GTMKAC | 1 cut(s) | 228 |
| AciI | CCGC | 2 cut(s) | 146, 497 |
| AclWI | GGATC | 2 cut(s) | 437, 450 |
| AcoI | YGGCCR | 1 cut(s) | 810 |
| AcsI | RAATTY | 3 cut(s) | 109, 318, 470 |
| AcuI | CTGAAG | 2 cut(s) | 144, 642 |
| AcvI | CACGTG | 1 cut(s) | 800 |
| AfaI | GTAC | 3 cut(s) | 155, 180, 853 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 334 |
| AflIII | ACRYGT | 1 cut(s) | 640 |
| AgsI | TTSAA | 4 cut(s) | 209, 263, 382, 694 |
| AleI | CACNNNNGTG | 1 cut(s) | 14 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 395, 427 |
| AluBI | AGCT | 9 cut(s) | 128, 310, 386, 437, 507, 515, 521, 869, 930 |
| AluI | AGCT | 9 cut(s) | 128, 310, 386, 437, 507, 515, 521, 869, 930 |
| Alw21I | GWGCWC | 2 cut(s) | 761, 925 |
| Alw26I | GTCTC | 1 cut(s) | 939 |
| AlwI | GGATC | 2 cut(s) | 437, 450 |
| AoxI | GGCC | 2 cut(s) | 810, 863 |
| ApeKI | GCWGC | 3 cut(s) | 434, 515, 518 |
| ApoI | RAATTY | 3 cut(s) | 109, 318, 470 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 530, 562 |
| AspA2I | CCTAGG | 1 cut(s) | 938 |
| AspS9I | GGNCC | 1 cut(s) | 857 |
| AsuHPI | GGTGA | 1 cut(s) | 290 |
| AvaII | GGWCC | 1 cut(s) | 857 |
| AvrII | CCTAGG | 1 cut(s) | 938 |
| AxyI | CCTNAGG | 1 cut(s) | 189 |
| BalI | TGGCCA | 1 cut(s) | 812 |
| BamHI | GGATCC | 1 cut(s) | 442 |
| BanI | GGYRCC | 1 cut(s) | 767 |
| BbrPI | CACGTG | 1 cut(s) | 800 |
| Bbv12I | GWGCWC | 2 cut(s) | 761, 925 |
| BbvI | GCAGC | 3 cut(s) | 446, 502, 530 |
| BccI | CCATC | 2 cut(s) | 123, 494 |
| BciVI | GTATCC | 1 cut(s) | 786 |
| BcoDI | GTCTC | 1 cut(s) | 939 |
| BfaI | CTAG | 1 cut(s) | 939 |
| BfmI | CTRYAG | 3 cut(s) | 432, 516, 762 |
| BfuI | GTATCC | 1 cut(s) | 786 |
| BisI | GCNGC | 3 cut(s) | 435, 516, 519 |
| BlnI | CCTAGG | 1 cut(s) | 938 |
| BlsI | GCNGC | 3 cut(s) | 436, 517, 520 |
| BmcAI | AGTACT | 2 cut(s) | 155, 853 |
| Bme18I | GGWCC | 1 cut(s) | 857 |
| BmgT120I | GGNCC | 1 cut(s) | 857 |
| BmiI | GGNNCC | 2 cut(s) | 444, 769 |
| BmsI | GCATC | 2 cut(s) | 280, 341 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 919 |
| BpmI | CTGGAG | 1 cut(s) | 152 |
| BsaAI | YACGTR | 1 cut(s) | 800 |
| BsaI | GGTCTC | 1 cut(s) | 939 |
| BsaJI | CCNNGG | 4 cut(s) | 446, 722, 860, 938 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 125, 155 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 334 |
| Bse1I | ACTGG | 2 cut(s) | 818, 859 |
| Bse21I | CCTNAGG | 1 cut(s) | 189 |
| BseDI | CCNNGG | 4 cut(s) | 446, 722, 860, 938 |
| BseGI | GGATG | 1 cut(s) | 505 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 334 |
| BseMII | CTCAG | 1 cut(s) | 180 |
| BseNI | ACTGG | 2 cut(s) | 818, 859 |
| BseXI | GCAGC | 3 cut(s) | 446, 502, 530 |
| BsgI | GTGCAG | 2 cut(s) | 38, 571 |
| BshFI | GGCC | 2 cut(s) | 812, 865 |
| BshNI | GGYRCC | 1 cut(s) | 767 |
| BsiHKAI | GWGCWC | 2 cut(s) | 761, 925 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 334 |
| BsmAI | GTCTC | 1 cut(s) | 939 |
| BsnI | GGCC | 2 cut(s) | 812, 865 |
| Bso31I | GGTCTC | 1 cut(s) | 939 |
| Bsp1286I | GDGCHC | 2 cut(s) | 761, 925 |
| Bsp143I | GATC | 2 cut(s) | 222, 442 |
| BspACI | CCGC | 2 cut(s) | 146, 497 |
| BspANI | GGCC | 2 cut(s) | 812, 865 |
| BspCNI | CTCAG | 1 cut(s) | 181 |
| BspHI | TCATGA | 1 cut(s) | 313 |
| BspLI | GGNNCC | 2 cut(s) | 444, 769 |
| BspMAI | CTGCAG | 3 cut(s) | 436, 520, 766 |
| BspPI | GGATC | 2 cut(s) | 437, 450 |
| BspT107I | GGYRCC | 1 cut(s) | 767 |
| BspTNI | GGTCTC | 1 cut(s) | 939 |
| BsrI | ACTGG | 2 cut(s) | 818, 859 |
| BssECI | CCNNGG | 4 cut(s) | 446, 722, 860, 938 |
| BssMI | GATC | 2 cut(s) | 222, 442 |
| BssT1I | CCWWGG | 3 cut(s) | 722, 860, 938 |
| Bst4CI | ACNGT | 1 cut(s) | 364 |
| Bst6I | CTCTTC | 1 cut(s) | 163 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 338 |
| BstBAI | YACGTR | 1 cut(s) | 800 |
| BstC8I | GCNNGC | 4 cut(s) | 766, 828, 867, 909 |
| BstDEI | CTNAG | 1 cut(s) | 189 |
| BstF5I | GGATG | 1 cut(s) | 505 |
| BstKTI | GATC | 2 cut(s) | 225, 445 |
| BstMAI | GTCTC | 1 cut(s) | 939 |
| BstMBI | GATC | 2 cut(s) | 222, 442 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 338, 765 |
| BstNSI | RCATGY | 2 cut(s) | 644, 911 |
| BstSFI | CTRYAG | 3 cut(s) | 432, 516, 762 |
| BstV1I | GCAGC | 3 cut(s) | 446, 502, 530 |
| BstX2I | RGATCY | 1 cut(s) | 442 |
| BstYI | RGATCY | 1 cut(s) | 442 |
| Bsu36I | CCTNAGG | 1 cut(s) | 189 |
| BsuI | GTATCC | 1 cut(s) | 786 |
| BsuRI | GGCC | 2 cut(s) | 812, 865 |
| BtsCI | GGATG | 1 cut(s) | 505 |
| BtsI | GCAGTG | 2 cut(s) | 759, 902 |
| BtsIMutI | CAGTG | 3 cut(s) | 168, 759, 902 |
| Cac8I | GCNNGC | 4 cut(s) | 766, 828, 867, 909 |
| CciI | TCATGA | 1 cut(s) | 313 |
| Cfr13I | GGNCC | 1 cut(s) | 857 |
| Csp6I | GTAC | 3 cut(s) | 154, 179, 852 |
| CviAII | CATG | 6 cut(s) | 305, 314, 566, 641, 889, 908 |
| CviQI | GTAC | 3 cut(s) | 154, 179, 852 |
| DdeI | CTNAG | 1 cut(s) | 189 |
| DpnI | GATC | 2 cut(s) | 224, 444 |
| DpnII | GATC | 2 cut(s) | 222, 442 |
| DraI | TTTAAA | 1 cut(s) | 454 |
| EaeI | YGGCCR | 1 cut(s) | 810 |
| Eam1104I | CTCTTC | 1 cut(s) | 163 |
| EarI | CTCTTC | 1 cut(s) | 163 |
| EciI | GGCGGA | 1 cut(s) | 512 |
| Eco130I | CCWWGG | 3 cut(s) | 722, 860, 938 |
| Eco31I | GGTCTC | 1 cut(s) | 939 |
| Eco47I | GGWCC | 1 cut(s) | 857 |
| Eco57I | CTGAAG | 2 cut(s) | 144, 642 |
| Eco72I | CACGTG | 1 cut(s) | 800 |
| Eco81I | CCTNAGG | 1 cut(s) | 189 |
| EcoT14I | CCWWGG | 3 cut(s) | 722, 860, 938 |
| ErhI | CCWWGG | 3 cut(s) | 722, 860, 938 |
| FaeI | CATG | 6 cut(s) | 308, 317, 569, 644, 892, 911 |
| FatI | CATG | 6 cut(s) | 304, 313, 565, 640, 888, 907 |
| FauI | CCCGC | 1 cut(s) | 139 |
| FblI | GTMKAC | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 3 cut(s) | 435, 516, 519 |
| FokI | GGATG | 1 cut(s) | 512 |
| Fsp4HI | GCNGC | 3 cut(s) | 435, 516, 519 |
| FspBI | CTAG | 1 cut(s) | 939 |
| GluI | GCNGC | 3 cut(s) | 435, 516, 519 |
| GsuI | CTGGAG | 1 cut(s) | 152 |
| HaeIII | GGCC | 2 cut(s) | 812, 865 |
| Hin1II | CATG | 6 cut(s) | 308, 317, 569, 644, 892, 911 |
| HincII | GTYRAC | 1 cut(s) | 166 |
| HindII | GTYRAC | 1 cut(s) | 166 |
| HindIII | AAGCTT | 1 cut(s) | 384 |
| HinfI | GANTC | 3 cut(s) | 596, 617, 646 |
| HphI | GGTGA | 1 cut(s) | 290 |
| Hpy166II | GTNNAC | 5 cut(s) | 166, 229, 583, 684, 886 |
| Hpy188I | TCNGA | 6 cut(s) | 324, 346, 574, 616, 622, 927 |
| Hpy188III | TCNNGA | 4 cut(s) | 131, 314, 440, 704 |
| Hpy8I | GTNNAC | 5 cut(s) | 166, 229, 583, 684, 886 |
| Hpy99I | CGWCG | 1 cut(s) | 470 |
| HpyAV | CCTTC | 2 cut(s) | 203, 617 |
| HpyCH4III | ACNGT | 1 cut(s) | 364 |
| HpyCH4IV | ACGT | 2 cut(s) | 465, 799 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 338, 765 |
| HpyF3I | CTNAG | 1 cut(s) | 189 |
| HpySE526I | ACGT | 2 cut(s) | 465, 799 |
| Hsp92II | CATG | 6 cut(s) | 308, 317, 569, 644, 892, 911 |
| Kzo9I | GATC | 2 cut(s) | 222, 442 |
| LmnI | GCTCC | 2 cut(s) | 756, 927 |
| Lsp1109I | GCAGC | 3 cut(s) | 446, 502, 530 |
| LweI | GCATC | 2 cut(s) | 280, 341 |
| MaeI | CTAG | 1 cut(s) | 939 |
| MaeII | ACGT | 2 cut(s) | 465, 799 |
| MaeIII | GTNAC | 2 cut(s) | 103, 663 |
| MalI | GATC | 2 cut(s) | 224, 444 |
| MboI | GATC | 2 cut(s) | 222, 442 |
| MboII | GAAGA | 4 cut(s) | 150, 211, 471, 719 |
| MfeI | CAATTG | 1 cut(s) | 689 |
| MflI | RGATCY | 1 cut(s) | 442 |
| MhlI | GDGCHC | 2 cut(s) | 761, 925 |
| MlsI | TGGCCA | 1 cut(s) | 812 |
| MluCI | AATT | 6 cut(s) | 48, 109, 318, 349, 470, 689 |
| MluNI | TGGCCA | 1 cut(s) | 812 |
| MnlI | CCTC | 3 cut(s) | 184, 352, 456 |
| Mox20I | TGGCCA | 1 cut(s) | 812 |
| MscI | TGGCCA | 1 cut(s) | 812 |
| MseI | TTAA | 5 cut(s) | 30, 39, 357, 369, 453 |
| MslI | CAYNNNNRTG | 2 cut(s) | 14, 303 |
| Msp20I | TGGCCA | 1 cut(s) | 812 |
| MspA1I | CMGCKG | 3 cut(s) | 146, 521, 869 |
| MunI | CAATTG | 1 cut(s) | 689 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 338, 765 |
| NdeII | GATC | 2 cut(s) | 222, 442 |
| NlaIII | CATG | 6 cut(s) | 308, 317, 569, 644, 892, 911 |
| NlaIV | GGNNCC | 2 cut(s) | 444, 769 |
| NmuCI | GTSAC | 1 cut(s) | 103 |
| NspI | RCATGY | 2 cut(s) | 644, 911 |
| OliI | CACNNNNGTG | 1 cut(s) | 14 |
| PaeI | GCATGC | 1 cut(s) | 911 |
| PagI | TCATGA | 1 cut(s) | 313 |
| PciI | ACATGT | 1 cut(s) | 640 |
| PfeI | GAWTC | 3 cut(s) | 596, 617, 646 |
| PkrI | GCNGC | 3 cut(s) | 436, 517, 520 |
| PmaCI | CACGTG | 1 cut(s) | 800 |
| PmlI | CACGTG | 1 cut(s) | 800 |
| Ppu21I | YACGTR | 1 cut(s) | 800 |
| PscI | ACATGT | 1 cut(s) | 640 |
| PspCI | CACGTG | 1 cut(s) | 800 |
| PspN4I | GGNNCC | 2 cut(s) | 444, 769 |
| PspPI | GGNCC | 1 cut(s) | 857 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 702, 734 |
| PstI | CTGCAG | 3 cut(s) | 436, 520, 766 |
| PsuI | RGATCY | 1 cut(s) | 442 |
| PvuII | CAGCTG | 2 cut(s) | 521, 869 |
| RsaI | GTAC | 3 cut(s) | 155, 180, 853 |
| RsaNI | GTAC | 3 cut(s) | 154, 179, 852 |
| RseI | CAYNNNNRTG | 2 cut(s) | 14, 303 |
| SaqAI | TTAA | 5 cut(s) | 30, 39, 357, 369, 453 |
| SatI | GCNGC | 3 cut(s) | 435, 516, 519 |
| Sau3AI | GATC | 2 cut(s) | 222, 442 |
| Sau96I | GGNCC | 1 cut(s) | 857 |
| ScaI | AGTACT | 2 cut(s) | 155, 853 |
| SduI | GDGCHC | 2 cut(s) | 761, 925 |
| SfaNI | GCATC | 2 cut(s) | 280, 341 |
| SfcI | CTRYAG | 3 cut(s) | 432, 516, 762 |
| SinI | GGWCC | 1 cut(s) | 857 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 14, 303 |
| SphI | GCATGC | 1 cut(s) | 911 |
| Sse9I | AATT | 6 cut(s) | 48, 109, 318, 349, 470, 689 |
| SsiI | CCGC | 2 cut(s) | 146, 497 |
| SspMI | CTAG | 1 cut(s) | 939 |
| StyI | CCWWGG | 3 cut(s) | 722, 860, 938 |
| TaaI | ACNGT | 1 cut(s) | 364 |
| TaiI | ACGT | 2 cut(s) | 468, 802 |
| TaqI | TCGA | 1 cut(s) | 468 |
| TasI | AATT | 6 cut(s) | 48, 109, 318, 349, 470, 689 |
| TatI | WGTACW | 2 cut(s) | 153, 851 |
| TfiI | GAWTC | 3 cut(s) | 596, 617, 646 |
| Tru1I | TTAA | 5 cut(s) | 30, 39, 357, 369, 453 |
| Tru9I | TTAA | 5 cut(s) | 30, 39, 357, 369, 453 |
| TscAI | CASTG | 3 cut(s) | 175, 766, 909 |
| TseFI | GTSAC | 1 cut(s) | 103 |
| TseI | GCWGC | 3 cut(s) | 434, 515, 518 |
| Tsp45I | GTSAC | 1 cut(s) | 103 |
| TspDTI | ATGAA | 6 cut(s) | 255, 302, 330, 473, 567, 905 |
| TspRI | CASTG | 3 cut(s) | 175, 766, 909 |
| VpaK11BI | GGWCC | 1 cut(s) | 857 |
| XapI | RAATTY | 3 cut(s) | 109, 318, 470 |
| XceI | RCATGY | 2 cut(s) | 644, 911 |
| XmaJI | CCTAGG | 1 cut(s) | 938 |
| XmiI | GTMKAC | 1 cut(s) | 228 |
| XspI | CTAG | 1 cut(s) | 939 |
| ZrmI | AGTACT | 2 cut(s) | 155, 853 |