Zinc finger BED domain-containing protein RICESLEEPER
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 128 - 229 | 4.5e-16 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 497 |
| AccB1I | GGYRCC | 2 cut(s) | 71, 266 |
| AccII | CGCG | 1 cut(s) | 565 |
| AciI | CCGC | 2 cut(s) | 86, 563 |
| AclWI | GGATC | 4 cut(s) | 96, 554, 666, 842 |
| AcsI | RAATTY | 2 cut(s) | 199, 233 |
| AfaI | GTAC | 1 cut(s) | 406 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 114, 290, 679 |
| AgsI | TTSAA | 6 cut(s) | 143, 232, 263, 370, 529, 796 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 696, 728 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 742, 774 |
| AluBI | AGCT | 5 cut(s) | 227, 245, 516, 638, 858 |
| AluI | AGCT | 5 cut(s) | 227, 245, 516, 638, 858 |
| Alw26I | GTCTC | 2 cut(s) | 340, 440 |
| AlwI | GGATC | 4 cut(s) | 96, 554, 666, 842 |
| AoxI | GGCC | 1 cut(s) | 293 |
| ApoI | RAATTY | 2 cut(s) | 199, 233 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 62 |
| AspS9I | GGNCC | 1 cut(s) | 293 |
| AsuC2I | CCSGG | 1 cut(s) | 832 |
| AsuHPI | GGTGA | 5 cut(s) | 100, 287, 425, 471, 728 |
| BanI | GGYRCC | 2 cut(s) | 71, 266 |
| BccI | CCATC | 2 cut(s) | 35, 605 |
| BcnI | CCSGG | 1 cut(s) | 832 |
| BcoDI | GTCTC | 2 cut(s) | 340, 440 |
| BfaI | CTAG | 3 cut(s) | 155, 192, 756 |
| BmcAI | AGTACT | 1 cut(s) | 406 |
| Bme1390I | CCNGG | 1 cut(s) | 832 |
| BmgT120I | GGNCC | 1 cut(s) | 293 |
| BmiI | GGNNCC | 2 cut(s) | 73, 268 |
| BmrFI | CCNGG | 1 cut(s) | 832 |
| BmsI | GCATC | 1 cut(s) | 485 |
| BpuEI | CTTGAG | 3 cut(s) | 364, 596, 717 |
| BpuMI | CCSGG | 1 cut(s) | 832 |
| BsaI | GGTCTC | 2 cut(s) | 340, 440 |
| BsaJI | CCNNGG | 1 cut(s) | 270 |
| BsaWI | WCCGGW | 1 cut(s) | 863 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 114, 290, 679 |
| Bse118I | RCCGGY | 1 cut(s) | 298 |
| Bse3DI | GCAATG | 2 cut(s) | 543, 828 |
| BseDI | CCNNGG | 1 cut(s) | 270 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 114, 290, 679 |
| BseMI | GCAATG | 2 cut(s) | 543, 828 |
| BseMII | CTCAG | 1 cut(s) | 459 |
| Bsh1236I | CGCG | 1 cut(s) | 565 |
| BshFI | GGCC | 1 cut(s) | 295 |
| BshNI | GGYRCC | 2 cut(s) | 71, 266 |
| BsiSI | CCGG | 3 cut(s) | 299, 831, 864 |
| BslFI | GGGAC | 2 cut(s) | 170, 763 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 114, 290, 679 |
| BsmAI | GTCTC | 2 cut(s) | 340, 440 |
| BsmFI | GGGAC | 2 cut(s) | 170, 763 |
| BsmI | GAATGC | 1 cut(s) | 261 |
| BsnI | GGCC | 1 cut(s) | 295 |
| Bso31I | GGTCTC | 2 cut(s) | 340, 440 |
| Bsp143I | GATC | 4 cut(s) | 101, 559, 658, 834 |
| BspACI | CCGC | 2 cut(s) | 86, 563 |
| BspANI | GGCC | 1 cut(s) | 295 |
| BspCNI | CTCAG | 1 cut(s) | 460 |
| BspFNI | CGCG | 1 cut(s) | 565 |
| BspLI | GGNNCC | 2 cut(s) | 73, 268 |
| BspPI | GGATC | 4 cut(s) | 96, 554, 666, 842 |
| BspQI | GCTCTTC | 1 cut(s) | 811 |
| BspT107I | GGYRCC | 2 cut(s) | 71, 266 |
| BspTNI | GGTCTC | 2 cut(s) | 340, 440 |
| BsrDI | GCAATG | 2 cut(s) | 543, 828 |
| BsrFI | RCCGGY | 1 cut(s) | 298 |
| BssAI | RCCGGY | 1 cut(s) | 298 |
| BssECI | CCNNGG | 1 cut(s) | 270 |
| BssMI | GATC | 4 cut(s) | 101, 559, 658, 834 |
| BssT1I | CCWWGG | 1 cut(s) | 270 |
| Bst4CI | ACNGT | 2 cut(s) | 397, 652 |
| Bst6I | CTCTTC | 2 cut(s) | 687, 811 |
| BstDEI | CTNAG | 1 cut(s) | 468 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 677 |
| BstFNI | CGCG | 1 cut(s) | 565 |
| BstKTI | GATC | 4 cut(s) | 104, 562, 661, 837 |
| BstMAI | GTCTC | 2 cut(s) | 340, 440 |
| BstMBI | GATC | 4 cut(s) | 101, 559, 658, 834 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 827 |
| BstSCI | CCNGG | 1 cut(s) | 830 |
| BstUI | CGCG | 1 cut(s) | 565 |
| BstX2I | RGATCY | 2 cut(s) | 101, 658 |
| BstYI | RGATCY | 2 cut(s) | 101, 658 |
| BsuRI | GGCC | 1 cut(s) | 295 |
| Cfr10I | RCCGGY | 1 cut(s) | 298 |
| Cfr13I | GGNCC | 1 cut(s) | 293 |
| CseI | GACGC | 1 cut(s) | 554 |
| Csp6I | GTAC | 1 cut(s) | 405 |
| CviAII | CATG | 2 cut(s) | 459, 762 |
| CviQI | GTAC | 1 cut(s) | 405 |
| DdeI | CTNAG | 1 cut(s) | 468 |
| DpnI | GATC | 4 cut(s) | 103, 561, 660, 836 |
| DpnII | GATC | 4 cut(s) | 101, 559, 658, 834 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 497 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 497 |
| Eam1104I | CTCTTC | 2 cut(s) | 687, 811 |
| EarI | CTCTTC | 2 cut(s) | 687, 811 |
| Eco130I | CCWWGG | 1 cut(s) | 270 |
| Eco31I | GGTCTC | 2 cut(s) | 340, 440 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 677 |
| EcoRI | GAATTC | 1 cut(s) | 199 |
| EcoT14I | CCWWGG | 1 cut(s) | 270 |
| ErhI | CCWWGG | 1 cut(s) | 270 |
| FaeI | CATG | 2 cut(s) | 462, 765 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 647, 679 |
| FaqI | GGGAC | 2 cut(s) | 170, 763 |
| FatI | CATG | 2 cut(s) | 458, 761 |
| FspBI | CTAG | 3 cut(s) | 155, 192, 756 |
| HaeIII | GGCC | 1 cut(s) | 295 |
| HapII | CCGG | 3 cut(s) | 299, 831, 864 |
| HgaI | GACGC | 1 cut(s) | 554 |
| Hin1II | CATG | 2 cut(s) | 462, 765 |
| HincII | GTYRAC | 2 cut(s) | 589, 871 |
| HindII | GTYRAC | 2 cut(s) | 589, 871 |
| HindIII | AAGCTT | 1 cut(s) | 243 |
| HinfI | GANTC | 3 cut(s) | 529, 601, 885 |
| HpaII | CCGG | 3 cut(s) | 299, 831, 864 |
| HphI | GGTGA | 5 cut(s) | 100, 287, 425, 471, 728 |
| Hpy166II | GTNNAC | 3 cut(s) | 589, 841, 871 |
| Hpy188I | TCNGA | 4 cut(s) | 24, 250, 469, 884 |
| Hpy188III | TCNNGA | 4 cut(s) | 211, 343, 557, 605 |
| Hpy8I | GTNNAC | 3 cut(s) | 589, 841, 871 |
| HpyAV | CCTTC | 7 cut(s) | 257, 284, 364, 649, 693, 796, 889 |
| HpyCH4III | ACNGT | 2 cut(s) | 397, 652 |
| HpyCH4V | TGCA | 4 cut(s) | 162, 442, 476, 487 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 827 |
| HpyF3I | CTNAG | 1 cut(s) | 468 |
| Hsp92II | CATG | 2 cut(s) | 462, 765 |
| Kzo9I | GATC | 4 cut(s) | 101, 559, 658, 834 |
| LguI | GCTCTTC | 1 cut(s) | 811 |
| LmnI | GCTCC | 2 cut(s) | 325, 805 |
| LpnPI | CCDG | 3 cut(s) | 312, 844, 877 |
| LweI | GCATC | 1 cut(s) | 485 |
| MaeI | CTAG | 3 cut(s) | 155, 192, 756 |
| MalI | GATC | 4 cut(s) | 103, 561, 660, 836 |
| MboI | GATC | 4 cut(s) | 101, 559, 658, 834 |
| MboII | GAAGA | 4 cut(s) | 70, 704, 828, 880 |
| MflI | RGATCY | 2 cut(s) | 101, 658 |
| MluCI | AATT | 4 cut(s) | 199, 233, 329, 385 |
| MmeI | TCCRAC | 1 cut(s) | 198 |
| MnlI | CCTC | 6 cut(s) | 84, 115, 682, 688, 712, 739 |
| MroXI | GAANNNNTTC | 1 cut(s) | 62 |
| MseI | TTAA | 1 cut(s) | 129 |
| MspI | CCGG | 3 cut(s) | 299, 831, 864 |
| MspR9I | CCNGG | 1 cut(s) | 832 |
| Mva1269I | GAATGC | 1 cut(s) | 261 |
| MvnI | CGCG | 1 cut(s) | 565 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 827 |
| NciI | CCSGG | 1 cut(s) | 832 |
| NdeII | GATC | 4 cut(s) | 101, 559, 658, 834 |
| NlaIII | CATG | 2 cut(s) | 462, 765 |
| NlaIV | GGNNCC | 2 cut(s) | 73, 268 |
| PciSI | GCTCTTC | 1 cut(s) | 811 |
| PctI | GAATGC | 1 cut(s) | 261 |
| PdmI | GAANNNNTTC | 1 cut(s) | 62 |
| PfeI | GAWTC | 3 cut(s) | 529, 601, 885 |
| PspN4I | GGNNCC | 2 cut(s) | 73, 268 |
| PspPI | GGNCC | 1 cut(s) | 293 |
| PsuI | RGATCY | 2 cut(s) | 101, 658 |
| RsaI | GTAC | 1 cut(s) | 406 |
| RsaNI | GTAC | 1 cut(s) | 405 |
| SapI | GCTCTTC | 1 cut(s) | 811 |
| SaqAI | TTAA | 1 cut(s) | 129 |
| Sau3AI | GATC | 4 cut(s) | 101, 559, 658, 834 |
| Sau96I | GGNCC | 1 cut(s) | 293 |
| ScaI | AGTACT | 1 cut(s) | 406 |
| ScrFI | CCNGG | 1 cut(s) | 832 |
| SfaNI | GCATC | 1 cut(s) | 485 |
| SmlI | CTYRAG | 3 cut(s) | 343, 575, 732 |
| SmoI | CTYRAG | 3 cut(s) | 343, 575, 732 |
| Sse9I | AATT | 4 cut(s) | 199, 233, 329, 385 |
| SsiI | CCGC | 2 cut(s) | 86, 563 |
| SspMI | CTAG | 3 cut(s) | 155, 192, 756 |
| StyD4I | CCNGG | 1 cut(s) | 830 |
| StyI | CCWWGG | 1 cut(s) | 270 |
| TaaI | ACNGT | 2 cut(s) | 397, 652 |
| TasI | AATT | 4 cut(s) | 199, 233, 329, 385 |
| TatI | WGTACW | 1 cut(s) | 404 |
| TfiI | GAWTC | 3 cut(s) | 529, 601, 885 |
| Tru1I | TTAA | 1 cut(s) | 129 |
| Tru9I | TTAA | 1 cut(s) | 129 |
| TspDTI | ATGAA | 9 cut(s) | 55, 71, 372, 389, 532, 635, 639, 750, 839 |
| TspGWI | ACGGA | 1 cut(s) | 791 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 677 |
| XapI | RAATTY | 2 cut(s) | 199, 233 |
| XmnI | GAANNNNTTC | 1 cut(s) | 62 |
| XspI | CTAG | 3 cut(s) | 155, 192, 756 |
| ZrmI | AGTACT | 1 cut(s) | 406 |