BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 537, 1888 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 335, 417, 2184 |
| AccII | CGCG | 1 cut(s) | 1208 |
| AciI | CCGC | 5 cut(s) | 394, 694, 997, 1419, 1961 |
| AcoI | YGGCCR | 1 cut(s) | 1416 |
| AcsI | RAATTY | 6 cut(s) | 1153, 1469, 1791, 1907, 1930, 2012 |
| AcuI | CTGAAG | 4 cut(s) | 36, 165, 767, 1284 |
| AcvI | CACGTG | 1 cut(s) | 899 |
| AcyI | GRCGYC | 1 cut(s) | 538 |
| AfaI | GTAC | 9 cut(s) | 774, 1239, 1289, 1703, 1757, 1919, 2030, 2132, 2176 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 113, 335, 417, 580, 913, 936, 1178, 1492, 2184 |
| AflII | CTTAAG | 1 cut(s) | 1331 |
| AflIII | ACRYGT | 3 cut(s) | 898, 918, 1817 |
| AjiI | CACGTC | 1 cut(s) | 919 |
| AjnI | CCWGG | 3 cut(s) | 135, 579, 754 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 251, 283 |
| Alw21I | GWGCWC | 3 cut(s) | 57, 1528, 1854 |
| Alw26I | GTCTC | 4 cut(s) | 325, 359, 520, 1508 |
| Alw44I | GTGCAC | 1 cut(s) | 1524 |
| Ama87I | CYCGRG | 1 cut(s) | 1977 |
| AoxI | GGCC | 1 cut(s) | 1416 |
| ApaLI | GTGCAC | 1 cut(s) | 1524 |
| ApeKI | GCWGC | 7 cut(s) | 103, 563, 893, 988, 1000, 1142, 1221 |
| ApoI | RAATTY | 6 cut(s) | 1153, 1469, 1791, 1907, 1930, 2012 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 625, 657, 2084, 2116 |
| AseI | ATTAAT | 1 cut(s) | 1695 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1320 |
| AspLEI | GCGC | 3 cut(s) | 540, 563, 1210 |
| AspS9I | GGNCC | 1 cut(s) | 555 |
| AsuC2I | CCSGG | 3 cut(s) | 272, 961, 1274 |
| AsuHPI | GGTGA | 6 cut(s) | 124, 421, 521, 1633, 1777, 2193 |
| AsuII | TTCGAA | 1 cut(s) | 1149 |
| AvaI | CYCGRG | 1 cut(s) | 1977 |
| AvaII | GGWCC | 1 cut(s) | 555 |
| AxyI | CCTNAGG | 2 cut(s) | 533, 2206 |
| BaeGI | GKGCMC | 2 cut(s) | 966, 1528 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1029, 1062 |
| BamHI | GGATCC | 2 cut(s) | 1651, 1747 |
| BanI | GGYRCC | 2 cut(s) | 537, 1888 |
| BanII | GRGCYC | 3 cut(s) | 57, 1308, 1854 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 765, 797 |
| BauI | CACGAG | 4 cut(s) | 523, 1847, 1985, 2052 |
| BbrPI | CACGTG | 1 cut(s) | 899 |
| BbsI | GAAGAC | 2 cut(s) | 24, 1943 |
| Bbv12I | GWGCWC | 3 cut(s) | 57, 1528, 1854 |
| BbvI | GCAGC | 7 cut(s) | 115, 550, 880, 975, 987, 1129, 1233 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1186, 1220 |
| BciT130I | CCWGG | 3 cut(s) | 137, 581, 756 |
| BciVI | GTATCC | 2 cut(s) | 336, 1030 |
| BclI | TGATCA | 4 cut(s) | 27, 679, 714, 1117 |
| BcnI | CCSGG | 3 cut(s) | 272, 961, 1274 |
| BcoDI | GTCTC | 4 cut(s) | 325, 359, 520, 1508 |
| BfaI | CTAG | 5 cut(s) | 387, 657, 1562, 1685, 2000 |
| BfmI | CTRYAG | 3 cut(s) | 737, 1041, 1731 |
| BfoI | RGCGCY | 1 cut(s) | 541 |
| BfrI | CTTAAG | 1 cut(s) | 1331 |
| BfuI | GTATCC | 2 cut(s) | 336, 1030 |
| BglII | AGATCT | 1 cut(s) | 1624 |
| BmcAI | AGTACT | 1 cut(s) | 1239 |
| Bme1390I | CCNGG | 6 cut(s) | 137, 272, 581, 756, 961, 1274 |
| Bme18I | GGWCC | 1 cut(s) | 555 |
| BmeT110I | CYCGRG | 1 cut(s) | 1977 |
| BmgBI | CACGTC | 1 cut(s) | 919 |
| BmgT120I | GGNCC | 1 cut(s) | 555 |
| BmiI | GGNNCC | 8 cut(s) | 162, 539, 556, 1020, 1653, 1749, 1890, 1965 |
| BmrFI | CCNGG | 6 cut(s) | 137, 272, 581, 756, 961, 1274 |
| BmsI | GCATC | 6 cut(s) | 28, 964, 1290, 1453, 1903, 2178 |
| BpiI | GAAGAC | 2 cut(s) | 24, 1943 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 281, 313, 305, 337 |
| BpmI | CTGGAG | 2 cut(s) | 1106, 1262 |
| Bpu14I | TTCGAA | 1 cut(s) | 1149 |
| BpuEI | CTTGAG | 1 cut(s) | 918 |
| BpuMI | CCSGG | 3 cut(s) | 272, 961, 1274 |
| BsaAI | YACGTR | 3 cut(s) | 899, 1291, 1458 |
| BsaBI | GATNNNNATC | 1 cut(s) | 227 |
| BsaHI | GRCGYC | 1 cut(s) | 538 |
| BsaJI | CCNNGG | 6 cut(s) | 135, 411, 826, 1751, 2157, 2178 |
| BsaWI | WCCGGW | 1 cut(s) | 2071 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1955, 1985 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 113, 335, 417, 580, 913, 936, 1178, 1492, 2184 |
| Bse1I | ACTGG | 3 cut(s) | 986, 1245, 1709 |
| Bse21I | CCTNAGG | 2 cut(s) | 533, 2206 |
| Bse3DI | GCAATG | 4 cut(s) | 702, 703, 837, 1224 |
| Bse8I | GATNNNNATC | 1 cut(s) | 227 |
| BseBI | CCWGG | 3 cut(s) | 137, 581, 756 |
| BseDI | CCNNGG | 6 cut(s) | 135, 411, 826, 1751, 2157, 2178 |
| BseGI | GGATG | 6 cut(s) | 43, 458, 605, 751, 1557, 2193 |
| BseJI | GATNNNNATC | 1 cut(s) | 227 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 113, 335, 417, 580, 913, 936, 1178, 1492, 2184 |
| BseMI | GCAATG | 4 cut(s) | 702, 703, 837, 1224 |
| BseMII | CTCAG | 7 cut(s) | 531, 547, 780, 1208, 1400, 1416, 2109 |
| BseNI | ACTGG | 3 cut(s) | 986, 1245, 1709 |
| BseRI | GAGGAG | 1 cut(s) | 377 |
| BseSI | GKGCMC | 2 cut(s) | 966, 1528 |
| BseXI | GCAGC | 7 cut(s) | 115, 550, 880, 975, 987, 1129, 1233 |
| BsgI | GTGCAG | 2 cut(s) | 549, 879 |
| Bsh1236I | CGCG | 1 cut(s) | 1208 |
| BshFI | GGCC | 1 cut(s) | 1418 |
| BshNI | GGYRCC | 2 cut(s) | 537, 1888 |
| BsiHKAI | GWGCWC | 3 cut(s) | 57, 1528, 1854 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1977 |
| BsiSI | CCGG | 5 cut(s) | 35, 272, 960, 1273, 2072 |
| BslFI | GGGAC | 2 cut(s) | 1289, 1334 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 113, 335, 417, 580, 913, 936, 1178, 1492, 2184 |
| BsmAI | GTCTC | 4 cut(s) | 325, 359, 520, 1508 |
| BsmFI | GGGAC | 2 cut(s) | 1289, 1334 |
| BsmI | GAATGC | 1 cut(s) | 1252 |
| BsnI | GGCC | 1 cut(s) | 1418 |
| BsoBI | CYCGRG | 1 cut(s) | 1977 |
| Bsp119I | TTCGAA | 1 cut(s) | 1149 |
| Bsp1286I | GDGCHC | 5 cut(s) | 57, 966, 1308, 1528, 1854 |
| Bsp1407I | TGTACA | 1 cut(s) | 772 |
| Bsp19I | CCATGG | 1 cut(s) | 411 |
| BspACI | CCGC | 5 cut(s) | 394, 694, 997, 1419, 1961 |
| BspANI | GGCC | 1 cut(s) | 1418 |
| BspCNI | CTCAG | 7 cut(s) | 530, 546, 781, 1209, 1399, 1417, 2108 |
| BspFNI | CGCG | 1 cut(s) | 1208 |
| BspHI | TCATGA | 6 cut(s) | 76, 211, 373, 1114, 1131, 1923 |
| BspLI | GGNNCC | 8 cut(s) | 162, 539, 556, 1020, 1653, 1749, 1890, 1965 |
| BspMAI | CTGCAG | 2 cut(s) | 741, 1045 |
| BspQI | GCTCTTC | 1 cut(s) | 141 |
| BspT104I | TTCGAA | 1 cut(s) | 1149 |
| BspT107I | GGYRCC | 2 cut(s) | 537, 1888 |
| BspTI | CTTAAG | 1 cut(s) | 1331 |
| BsrDI | GCAATG | 4 cut(s) | 702, 703, 837, 1224 |
| BsrGI | TGTACA | 1 cut(s) | 772 |
| BsrI | ACTGG | 3 cut(s) | 986, 1245, 1709 |
| BssECI | CCNNGG | 6 cut(s) | 135, 411, 826, 1751, 2157, 2178 |
| BssNI | GRCGYC | 1 cut(s) | 538 |
| BssSI | CACGAG | 4 cut(s) | 523, 1847, 1985, 2052 |
| BssT1I | CCWWGG | 3 cut(s) | 411, 826, 2178 |
| Bst2BI | CACGAG | 4 cut(s) | 523, 1847, 1985, 2052 |
| Bst2UI | CCWGG | 3 cut(s) | 137, 581, 756 |
| Bst4CI | ACNGT | 5 cut(s) | 335, 442, 823, 2083, 2158 |
| Bst6I | CTCTTC | 1 cut(s) | 141 |
| BstACI | GRCGYC | 1 cut(s) | 538 |
| BstAFI | CTTAAG | 1 cut(s) | 1331 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 477 |
| BstAUI | TGTACA | 1 cut(s) | 772 |
| BstBAI | YACGTR | 3 cut(s) | 899, 1291, 1458 |
| BstBI | TTCGAA | 1 cut(s) | 1149 |
| BstC8I | GCNNGC | 4 cut(s) | 392, 482, 1195, 2148 |
| BstDEI | CTNAG | 9 cut(s) | 517, 533, 789, 869, 1217, 1386, 1425, 2095, 2206 |
| BstDSI | CCRYGG | 2 cut(s) | 411, 2157 |
| BstF5I | GGATG | 6 cut(s) | 43, 458, 605, 751, 1557, 2193 |
| BstFNI | CGCG | 1 cut(s) | 1208 |
| BstH2I | RGCGCY | 1 cut(s) | 541 |
| BstHHI | GCGC | 3 cut(s) | 540, 563, 1210 |
| BstMAI | GTCTC | 4 cut(s) | 325, 359, 520, 1508 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 391, 477, 486, 994, 997, 1972 |
| BstNI | CCWGG | 3 cut(s) | 137, 581, 756 |
| BstNSI | RCATGY | 1 cut(s) | 1821 |
| BstSCI | CCNGG | 6 cut(s) | 135, 270, 579, 754, 959, 1272 |
| BstSFI | CTRYAG | 3 cut(s) | 737, 1041, 1731 |
| BstSLI | GKGCMC | 2 cut(s) | 966, 1528 |
| BstSNI | TACGTA | 1 cut(s) | 1458 |
| BstUI | CGCG | 1 cut(s) | 1208 |
| BstV1I | GCAGC | 7 cut(s) | 115, 550, 880, 975, 987, 1129, 1233 |
| BstV2I | GAAGAC | 2 cut(s) | 24, 1943 |
| BstX2I | RGATCY | 4 cut(s) | 222, 1624, 1651, 1747 |
| BstYI | RGATCY | 4 cut(s) | 222, 1624, 1651, 1747 |
| Bsu36I | CCTNAGG | 2 cut(s) | 533, 2206 |
| BsuI | GTATCC | 2 cut(s) | 336, 1030 |
| BsuRI | GGCC | 1 cut(s) | 1418 |
| BtgI | CCRYGG | 2 cut(s) | 411, 2157 |
| BtrI | CACGTC | 1 cut(s) | 919 |
| BtsCI | GGATG | 6 cut(s) | 43, 458, 605, 751, 1557, 2193 |
| BtsI | GCAGTG | 4 cut(s) | 57, 688, 734, 1743 |
| BtsIMutI | CAGTG | 6 cut(s) | 57, 340, 688, 734, 1394, 1743 |
| Cac8I | GCNNGC | 4 cut(s) | 392, 482, 1195, 2148 |
| CciI | TCATGA | 6 cut(s) | 76, 211, 373, 1114, 1131, 1923 |
| CfoI | GCGC | 3 cut(s) | 540, 563, 1210 |
| Cfr13I | GGNCC | 1 cut(s) | 555 |
| Csp6I | GTAC | 9 cut(s) | 773, 1238, 1288, 1702, 1756, 1918, 2029, 2131, 2175 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1370, 1405 |
| CviQI | GTAC | 9 cut(s) | 773, 1238, 1288, 1702, 1756, 1918, 2029, 2131, 2175 |
| DdeI | CTNAG | 9 cut(s) | 517, 533, 789, 869, 1217, 1386, 1425, 2095, 2206 |
| DinI | GGCGCC | 1 cut(s) | 539 |
| DraI | TTTAAA | 1 cut(s) | 1158 |
| EaeI | YGGCCR | 1 cut(s) | 1416 |
| Eam1104I | CTCTTC | 1 cut(s) | 141 |
| EarI | CTCTTC | 1 cut(s) | 141 |
| EciI | GGCGGA | 1 cut(s) | 1976 |
| Ecl136II | GAGCTC | 2 cut(s) | 55, 1852 |
| Eco105I | TACGTA | 1 cut(s) | 1458 |
| Eco130I | CCWWGG | 3 cut(s) | 411, 826, 2178 |
| Eco24I | GRGCYC | 3 cut(s) | 57, 1308, 1854 |
| Eco47I | GGWCC | 1 cut(s) | 555 |
| Eco53kI | GAGCTC | 2 cut(s) | 55, 1852 |
| Eco57I | CTGAAG | 4 cut(s) | 36, 165, 767, 1284 |
| Eco72I | CACGTG | 1 cut(s) | 899 |
| Eco81I | CCTNAGG | 2 cut(s) | 533, 2206 |
| Eco88I | CYCGRG | 1 cut(s) | 1977 |
| EcoICRI | GAGCTC | 2 cut(s) | 55, 1852 |
| EcoO109I | RGGNCCY | 1 cut(s) | 555 |
| EcoRI | GAATTC | 1 cut(s) | 1469 |
| EcoRII | CCWGG | 3 cut(s) | 135, 579, 754 |
| EcoT14I | CCWWGG | 3 cut(s) | 411, 826, 2178 |
| EcoT22I | ATGCAT | 2 cut(s) | 496, 726 |
| EcoT38I | GRGCYC | 3 cut(s) | 57, 1308, 1854 |
| EgeI | GGCGCC | 1 cut(s) | 539 |
| EheI | GGCGCC | 1 cut(s) | 539 |
| ErhI | CCWWGG | 3 cut(s) | 411, 826, 2178 |
| FaqI | GGGAC | 2 cut(s) | 1289, 1334 |
| FbaI | TGATCA | 4 cut(s) | 27, 679, 714, 1117 |
| FokI | GGATG | 6 cut(s) | 50, 465, 592, 738, 1544, 2200 |
| FriOI | GRGCYC | 3 cut(s) | 57, 1308, 1854 |
| FspBI | CTAG | 5 cut(s) | 387, 657, 1562, 1685, 2000 |
| GlaI | GCGC | 3 cut(s) | 539, 562, 1209 |
| GsuI | CTGGAG | 2 cut(s) | 1106, 1262 |
| HaeII | RGCGCY | 1 cut(s) | 541 |
| HaeIII | GGCC | 1 cut(s) | 1418 |
| HapII | CCGG | 5 cut(s) | 35, 272, 960, 1273, 2072 |
| HhaI | GCGC | 3 cut(s) | 540, 563, 1210 |
| Hin1I | GRCGYC | 1 cut(s) | 538 |
| Hin6I | GCGC | 3 cut(s) | 538, 561, 1208 |
| HinP1I | GCGC | 3 cut(s) | 538, 561, 1208 |
| HincII | GTYRAC | 1 cut(s) | 1184 |
| HindII | GTYRAC | 1 cut(s) | 1184 |
| HindIII | AAGCTT | 1 cut(s) | 1160 |
| HpaII | CCGG | 5 cut(s) | 35, 272, 960, 1273, 2072 |
| HphI | GGTGA | 6 cut(s) | 124, 421, 521, 1633, 1777, 2193 |
| Hpy166II | GTNNAC | 5 cut(s) | 924, 1184, 1526, 1984, 2029 |
| Hpy188I | TCNGA | 7 cut(s) | 598, 852, 1036, 1218, 1303, 1426, 1752 |
| Hpy8I | GTNNAC | 5 cut(s) | 924, 1184, 1526, 1984, 2029 |
| Hpy99I | CGWCG | 1 cut(s) | 642 |
| HpyAV | CCTTC | 4 cut(s) | 544, 1079, 1183, 1887 |
| HpyCH4III | ACNGT | 5 cut(s) | 335, 442, 823, 2083, 2158 |
| HpyCH4IV | ACGT | 6 cut(s) | 543, 637, 898, 918, 1290, 1457 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 391, 477, 486, 994, 997, 1972 |
| HpyF3I | CTNAG | 9 cut(s) | 517, 533, 789, 869, 1217, 1386, 1425, 2095, 2206 |
| HpySE526I | ACGT | 6 cut(s) | 543, 637, 898, 918, 1290, 1457 |
| Hsp92I | GRCGYC | 1 cut(s) | 538 |
| HspAI | GCGC | 3 cut(s) | 538, 561, 1208 |
| KasI | GGCGCC | 1 cut(s) | 537 |
| Ksp22I | TGATCA | 4 cut(s) | 27, 679, 714, 1117 |
| LguI | GCTCTTC | 1 cut(s) | 141 |
| LmnI | GCTCC | 3 cut(s) | 421, 1816, 1963 |
| Lsp1109I | GCAGC | 7 cut(s) | 115, 550, 880, 975, 987, 1129, 1233 |
| LweI | GCATC | 6 cut(s) | 28, 964, 1290, 1453, 1903, 2178 |
| MaeI | CTAG | 5 cut(s) | 387, 657, 1562, 1685, 2000 |
| MaeII | ACGT | 6 cut(s) | 543, 637, 898, 918, 1290, 1457 |
| MaeIII | GTNAC | 8 cut(s) | 527, 641, 955, 1045, 1291, 1664, 2054, 2090 |
| MfeI | CAATTG | 1 cut(s) | 1198 |
| MflI | RGATCY | 4 cut(s) | 222, 1624, 1651, 1747 |
| MhlI | GDGCHC | 5 cut(s) | 57, 966, 1308, 1528, 1854 |
| Mly113I | GGCGCC | 1 cut(s) | 538 |
| MlyI | GAGTC | 8 cut(s) | 235, 338, 535, 1025, 1090, 1510, 1989, 2087 |
| MmeI | TCCRAC | 1 cut(s) | 1838 |
| Mph1103I | ATGCAT | 2 cut(s) | 496, 726 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1320 |
| MseI | TTAA | 5 cut(s) | 1059, 1157, 1263, 1332, 1695 |
| MslI | CAYNNNNRTG | 1 cut(s) | 249 |
| MspCI | CTTAAG | 1 cut(s) | 1331 |
| MspI | CCGG | 5 cut(s) | 35, 272, 960, 1273, 2072 |
| MspR9I | CCNGG | 6 cut(s) | 137, 272, 581, 756, 961, 1274 |
| MunI | CAATTG | 1 cut(s) | 1198 |
| Mva1269I | GAATGC | 1 cut(s) | 1252 |
| MvaI | CCWGG | 3 cut(s) | 137, 581, 756 |
| MvnI | CGCG | 1 cut(s) | 1208 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 391, 477, 486, 994, 997, 1972 |
| NarI | GGCGCC | 1 cut(s) | 538 |
| NciI | CCSGG | 3 cut(s) | 272, 961, 1274 |
| NcoI | CCATGG | 1 cut(s) | 411 |
| NlaIV | GGNNCC | 8 cut(s) | 162, 539, 556, 1020, 1653, 1749, 1890, 1965 |
| NmuCI | GTSAC | 5 cut(s) | 527, 641, 1291, 2054, 2090 |
| NsiI | ATGCAT | 2 cut(s) | 496, 726 |
| NspI | RCATGY | 1 cut(s) | 1821 |
| NspV | TTCGAA | 1 cut(s) | 1149 |
| PaeR7I | CTCGAG | 1 cut(s) | 1977 |
| PagI | TCATGA | 6 cut(s) | 76, 211, 373, 1114, 1131, 1923 |
| PciI | ACATGT | 1 cut(s) | 1817 |
| PciSI | GCTCTTC | 1 cut(s) | 141 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 646 |
| PctI | GAATGC | 1 cut(s) | 1252 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1320 |
| PfeI | GAWTC | 3 cut(s) | 778, 1615, 1842 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 335, 417, 2184 |
| PfoI | TCCNGGA | 2 cut(s) | 270, 1272 |
| PleI | GAGTC | 8 cut(s) | 235, 338, 534, 1025, 1089, 1510, 1988, 2087 |
| PluTI | GGCGCC | 1 cut(s) | 541 |
| PmaCI | CACGTG | 1 cut(s) | 899 |
| PmlI | CACGTG | 1 cut(s) | 899 |
| PpsI | GAGTC | 8 cut(s) | 235, 338, 534, 1025, 1089, 1510, 1988, 2087 |
| Ppu21I | YACGTR | 3 cut(s) | 899, 1291, 1458 |
| PpuMI | RGGWCCY | 1 cut(s) | 555 |
| PscI | ACATGT | 1 cut(s) | 1817 |
| PshBI | ATTAAT | 1 cut(s) | 1695 |
| Psp124BI | GAGCTC | 2 cut(s) | 57, 1854 |
| Psp5II | RGGWCCY | 1 cut(s) | 555 |
| Psp6I | CCWGG | 3 cut(s) | 135, 579, 754 |
| PspCI | CACGTG | 1 cut(s) | 899 |
| PspGI | CCWGG | 3 cut(s) | 135, 579, 754 |
| PspN4I | GGNNCC | 8 cut(s) | 162, 539, 556, 1020, 1653, 1749, 1890, 1965 |
| PspPI | GGNCC | 1 cut(s) | 555 |
| PspPPI | RGGWCCY | 1 cut(s) | 555 |
| PspXI | VCTCGAGB | 1 cut(s) | 1977 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1760, 1792, 2067, 2099 |
| PstI | CTGCAG | 2 cut(s) | 741, 1045 |
| PsuI | RGATCY | 4 cut(s) | 222, 1624, 1651, 1747 |
| RsaI | GTAC | 9 cut(s) | 774, 1239, 1289, 1703, 1757, 1919, 2030, 2132, 2176 |
| RsaNI | GTAC | 9 cut(s) | 773, 1238, 1288, 1702, 1756, 1918, 2029, 2131, 2175 |
| RseI | CAYNNNNRTG | 1 cut(s) | 249 |
| SacI | GAGCTC | 2 cut(s) | 57, 1854 |
| SapI | GCTCTTC | 1 cut(s) | 141 |
| SaqAI | TTAA | 5 cut(s) | 1059, 1157, 1263, 1332, 1695 |
| Sau96I | GGNCC | 1 cut(s) | 555 |
| ScaI | AGTACT | 1 cut(s) | 1239 |
| SchI | GAGTC | 8 cut(s) | 235, 338, 535, 1025, 1090, 1510, 1989, 2087 |
| ScrFI | CCNGG | 6 cut(s) | 137, 272, 581, 756, 961, 1274 |
| SduI | GDGCHC | 5 cut(s) | 57, 966, 1308, 1528, 1854 |
| SfaNI | GCATC | 6 cut(s) | 28, 964, 1290, 1453, 1903, 2178 |
| SfcI | CTRYAG | 3 cut(s) | 737, 1041, 1731 |
| SfoI | GGCGCC | 1 cut(s) | 539 |
| Sfr274I | CTCGAG | 1 cut(s) | 1977 |
| SfuI | TTCGAA | 1 cut(s) | 1149 |
| SinI | GGWCC | 1 cut(s) | 555 |
| SlaI | CTCGAG | 1 cut(s) | 1977 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 249 |
| SmlI | CTYRAG | 3 cut(s) | 933, 1331, 1977 |
| SmoI | CTYRAG | 3 cut(s) | 933, 1331, 1977 |
| SnaBI | TACGTA | 1 cut(s) | 1458 |
| SsiI | CCGC | 5 cut(s) | 394, 694, 997, 1419, 1961 |
| SspDI | GGCGCC | 1 cut(s) | 537 |
| SspI | AATATT | 1 cut(s) | 49 |
| SspMI | CTAG | 5 cut(s) | 387, 657, 1562, 1685, 2000 |
| SstI | GAGCTC | 2 cut(s) | 57, 1854 |
| StyD4I | CCNGG | 6 cut(s) | 135, 270, 579, 754, 959, 1272 |
| StyI | CCWWGG | 3 cut(s) | 411, 826, 2178 |
| TaaI | ACNGT | 5 cut(s) | 335, 442, 823, 2083, 2158 |
| TaiI | ACGT | 6 cut(s) | 546, 640, 901, 921, 1293, 1460 |
| TaqI | TCGA | 5 cut(s) | 1149, 1610, 1675, 1840, 1978 |
| TatI | WGTACW | 3 cut(s) | 772, 1237, 2130 |
| TauI | GCSGC | 3 cut(s) | 696, 1000, 1421 |
| TfiI | GAWTC | 3 cut(s) | 778, 1615, 1842 |
| Tru1I | TTAA | 5 cut(s) | 1059, 1157, 1263, 1332, 1695 |
| Tru9I | TTAA | 5 cut(s) | 1059, 1157, 1263, 1332, 1695 |
| TscAI | CASTG | 6 cut(s) | 64, 340, 695, 741, 1394, 1743 |
| TseFI | GTSAC | 5 cut(s) | 527, 641, 1291, 2054, 2090 |
| TseI | GCWGC | 7 cut(s) | 103, 563, 893, 988, 1000, 1142, 1221 |
| Tsp45I | GTSAC | 5 cut(s) | 527, 641, 1291, 2054, 2090 |
| TspGWI | ACGGA | 1 cut(s) | 563 |
| TspRI | CASTG | 6 cut(s) | 64, 340, 695, 741, 1394, 1743 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 335, 417, 2184 |
| Vha464I | CTTAAG | 1 cut(s) | 1331 |
| VneI | GTGCAC | 1 cut(s) | 1524 |
| VpaK11BI | GGWCC | 1 cut(s) | 555 |
| VspI | ATTAAT | 1 cut(s) | 1695 |
| XapI | RAATTY | 6 cut(s) | 1153, 1469, 1791, 1907, 1930, 2012 |
| XceI | RCATGY | 1 cut(s) | 1821 |
| XhoI | CTCGAG | 1 cut(s) | 1977 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1320 |
| XspI | CTAG | 5 cut(s) | 387, 657, 1562, 1685, 2000 |
| ZrmI | AGTACT | 1 cut(s) | 1239 |
| Zsp2I | ATGCAT | 2 cut(s) | 496, 726 |