BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 6, 56 |
| AciI | CCGC | 1 cut(s) | 154 |
| AcsI | RAATTY | 1 cut(s) | 288 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 31, 87 |
| AflIII | ACRYGT | 1 cut(s) | 69 |
| AjiI | CACGTC | 1 cut(s) | 70 |
| AluBI | AGCT | 2 cut(s) | 41, 139 |
| AluI | AGCT | 2 cut(s) | 41, 139 |
| AoxI | GGCC | 1 cut(s) | 74 |
| ApeKI | GCWGC | 3 cut(s) | 41, 139, 157 |
| ApoI | RAATTY | 1 cut(s) | 288 |
| AspLEI | GCGC | 4 cut(s) | 6, 8, 56, 58 |
| AspS9I | GGNCC | 1 cut(s) | 255 |
| AsuC2I | CCSGG | 1 cut(s) | 112 |
| AvaII | GGWCC | 1 cut(s) | 255 |
| BaeGI | GKGCMC | 1 cut(s) | 117 |
| BbvI | GCAGC | 3 cut(s) | 28, 126, 144 |
| BccI | CCATC | 1 cut(s) | 166 |
| BcnI | CCSGG | 1 cut(s) | 112 |
| BfmI | CTRYAG | 1 cut(s) | 198 |
| BisI | GCNGC | 4 cut(s) | 42, 140, 155, 158 |
| BlsI | GCNGC | 4 cut(s) | 43, 141, 156, 159 |
| Bme1390I | CCNGG | 1 cut(s) | 112 |
| Bme18I | GGWCC | 1 cut(s) | 255 |
| BmgBI | CACGTC | 1 cut(s) | 70 |
| BmgT120I | GGNCC | 1 cut(s) | 255 |
| BmrFI | CCNGG | 1 cut(s) | 112 |
| BmsI | GCATC | 1 cut(s) | 115 |
| BpuEI | CTTGAG | 1 cut(s) | 69 |
| BpuMI | CCSGG | 1 cut(s) | 112 |
| BsaAI | YACGTR | 1 cut(s) | 20 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 31, 87 |
| Bse1I | ACTGG | 2 cut(s) | 137, 258 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 31, 87 |
| BseMII | CTCAG | 1 cut(s) | 175 |
| BseNI | ACTGG | 2 cut(s) | 137, 258 |
| BsePI | GCGCGC | 2 cut(s) | 4, 54 |
| BseRI | GAGGAG | 1 cut(s) | 253 |
| BseSI | GKGCMC | 1 cut(s) | 117 |
| BseXI | GCAGC | 3 cut(s) | 28, 126, 144 |
| BseYI | CCCAGC | 1 cut(s) | 273 |
| Bsh1236I | CGCG | 2 cut(s) | 6, 56 |
| BshFI | GGCC | 1 cut(s) | 76 |
| BsiSI | CCGG | 1 cut(s) | 111 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 31, 87 |
| BsnI | GGCC | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 1 cut(s) | 117 |
| BspACI | CCGC | 1 cut(s) | 154 |
| BspANI | GGCC | 1 cut(s) | 76 |
| BspCNI | CTCAG | 1 cut(s) | 174 |
| BspFNI | CGCG | 2 cut(s) | 6, 56 |
| BspMAI | CTGCAG | 1 cut(s) | 202 |
| BsrI | ACTGG | 2 cut(s) | 137, 258 |
| BssHII | GCGCGC | 2 cut(s) | 4, 54 |
| BstBAI | YACGTR | 1 cut(s) | 20 |
| BstC8I | GCNNGC | 4 cut(s) | 6, 46, 56, 144 |
| BstDEI | CTNAG | 1 cut(s) | 161 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 29 |
| BstFNI | CGCG | 2 cut(s) | 6, 56 |
| BstHHI | GCGC | 4 cut(s) | 6, 8, 56, 58 |
| BstSCI | CCNGG | 1 cut(s) | 110 |
| BstSFI | CTRYAG | 1 cut(s) | 198 |
| BstSLI | GKGCMC | 1 cut(s) | 117 |
| BstUI | CGCG | 2 cut(s) | 6, 56 |
| BstV1I | GCAGC | 3 cut(s) | 28, 126, 144 |
| BsuRI | GGCC | 1 cut(s) | 76 |
| BtrI | CACGTC | 1 cut(s) | 70 |
| BtsI | GCAGTG | 1 cut(s) | 195 |
| BtsIMutI | CAGTG | 2 cut(s) | 169, 195 |
| Cac8I | GCNNGC | 4 cut(s) | 6, 46, 56, 144 |
| CfoI | GCGC | 4 cut(s) | 6, 8, 56, 58 |
| Cfr13I | GGNCC | 1 cut(s) | 255 |
| CseI | GACGC | 2 cut(s) | 37, 295 |
| CviAII | CATG | 1 cut(s) | 209 |
| CviJI | RGCY | 4 cut(s) | 41, 76, 139, 157 |
| CviKI_1 | RGCY | 4 cut(s) | 41, 76, 139, 157 |
| DdeI | CTNAG | 1 cut(s) | 161 |
| Eco47I | GGWCC | 1 cut(s) | 255 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 29 |
| FaeI | CATG | 1 cut(s) | 212 |
| FaiI | YATR | 8 cut(s) | 38, 99, 148, 150, 181, 210, 223, 225 |
| FatI | CATG | 1 cut(s) | 208 |
| Fnu4HI | GCNGC | 4 cut(s) | 42, 140, 155, 158 |
| Fsp4HI | GCNGC | 4 cut(s) | 42, 140, 155, 158 |
| GlaI | GCGC | 4 cut(s) | 5, 7, 55, 57 |
| GluI | GCNGC | 4 cut(s) | 42, 140, 155, 158 |
| GsaI | CCCAGC | 1 cut(s) | 277 |
| HaeIII | GGCC | 1 cut(s) | 76 |
| HapII | CCGG | 1 cut(s) | 111 |
| HgaI | GACGC | 2 cut(s) | 37, 295 |
| HhaI | GCGC | 4 cut(s) | 6, 8, 56, 58 |
| Hin1II | CATG | 1 cut(s) | 212 |
| Hin6I | GCGC | 4 cut(s) | 4, 6, 54, 56 |
| HinP1I | GCGC | 4 cut(s) | 4, 6, 54, 56 |
| HinfI | GANTC | 1 cut(s) | 188 |
| HpaII | CCGG | 1 cut(s) | 111 |
| Hpy188I | TCNGA | 3 cut(s) | 193, 294, 311 |
| Hpy188III | TCNNGA | 1 cut(s) | 185 |
| HpyAV | CCTTC | 1 cut(s) | 87 |
| HpyCH4IV | ACGT | 2 cut(s) | 19, 69 |
| HpyCH4V | TGCA | 3 cut(s) | 44, 146, 200 |
| HpyF3I | CTNAG | 1 cut(s) | 161 |
| HpySE526I | ACGT | 2 cut(s) | 19, 69 |
| Hsp92II | CATG | 1 cut(s) | 212 |
| HspAI | GCGC | 4 cut(s) | 4, 6, 54, 56 |
| LpnPI | CCDG | 7 cut(s) | 118, 124, 156, 198, 238, 271, 287 |
| Lsp1109I | GCAGC | 3 cut(s) | 28, 126, 144 |
| LweI | GCATC | 1 cut(s) | 115 |
| MaeII | ACGT | 2 cut(s) | 19, 69 |
| MaeIII | GTNAC | 2 cut(s) | 20, 106 |
| MboII | GAAGA | 1 cut(s) | 293 |
| MhlI | GDGCHC | 1 cut(s) | 117 |
| MluCI | AATT | 2 cut(s) | 11, 288 |
| MlyI | GAGTC | 1 cut(s) | 182 |
| MnlI | CCTC | 4 cut(s) | 25, 91, 231, 288 |
| MseI | TTAA | 1 cut(s) | 216 |
| MspI | CCGG | 1 cut(s) | 111 |
| MspR9I | CCNGG | 1 cut(s) | 112 |
| MvnI | CGCG | 2 cut(s) | 6, 56 |
| NciI | CCSGG | 1 cut(s) | 112 |
| NlaIII | CATG | 1 cut(s) | 212 |
| PauI | GCGCGC | 2 cut(s) | 4, 54 |
| PkrI | GCNGC | 4 cut(s) | 43, 141, 156, 159 |
| PleI | GAGTC | 1 cut(s) | 182 |
| PpsI | GAGTC | 1 cut(s) | 182 |
| Ppu21I | YACGTR | 1 cut(s) | 20 |
| PspFI | CCCAGC | 1 cut(s) | 273 |
| PspPI | GGNCC | 1 cut(s) | 255 |
| PstI | CTGCAG | 1 cut(s) | 202 |
| PteI | GCGCGC | 2 cut(s) | 4, 54 |
| SaqAI | TTAA | 1 cut(s) | 216 |
| SatI | GCNGC | 4 cut(s) | 42, 140, 155, 158 |
| Sau96I | GGNCC | 1 cut(s) | 255 |
| SchI | GAGTC | 1 cut(s) | 182 |
| ScrFI | CCNGG | 1 cut(s) | 112 |
| SduI | GDGCHC | 1 cut(s) | 117 |
| SetI | ASST | 5 cut(s) | 22, 27, 43, 72, 141 |
| SfaNI | GCATC | 1 cut(s) | 115 |
| SfcI | CTRYAG | 1 cut(s) | 198 |
| SinI | GGWCC | 1 cut(s) | 255 |
| SmlI | CTYRAG | 1 cut(s) | 84 |
| SmoI | CTYRAG | 1 cut(s) | 84 |
| Sse9I | AATT | 2 cut(s) | 11, 288 |
| SsiI | CCGC | 1 cut(s) | 154 |
| StyD4I | CCNGG | 1 cut(s) | 110 |
| TaiI | ACGT | 2 cut(s) | 22, 72 |
| TasI | AATT | 2 cut(s) | 11, 288 |
| TauI | GCSGC | 1 cut(s) | 157 |
| Tru1I | TTAA | 1 cut(s) | 216 |
| Tru9I | TTAA | 1 cut(s) | 216 |
| TscAI | CASTG | 2 cut(s) | 169, 202 |
| TseI | GCWGC | 3 cut(s) | 41, 139, 157 |
| TspDTI | ATGAA | 3 cut(s) | 109, 260, 300 |
| TspRI | CASTG | 2 cut(s) | 169, 202 |
| VpaK11BI | GGWCC | 1 cut(s) | 255 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 29 |
| XapI | RAATTY | 1 cut(s) | 288 |