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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 689 |
| AccII | CGCG | 1 cut(s) | 169 |
| AccIII | TCCGGA | 2 cut(s) | 98, 578 |
| AciI | CCGC | 3 cut(s) | 509, 588, 687 |
| AclWI | GGATC | 1 cut(s) | 659 |
| AfaI | GTAC | 1 cut(s) | 651 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 155, 505 |
| AgsI | TTSAA | 1 cut(s) | 318 |
| AluBI | AGCT | 4 cut(s) | 7, 67, 125, 146 |
| AluI | AGCT | 4 cut(s) | 7, 67, 125, 146 |
| Alw21I | GWGCWC | 1 cut(s) | 163 |
| Alw26I | GTCTC | 1 cut(s) | 472 |
| AlwI | GGATC | 1 cut(s) | 659 |
| Aor13HI | TCCGGA | 2 cut(s) | 98, 578 |
| ApeKI | GCWGC | 1 cut(s) | 122 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 8 |
| AspLEI | GCGC | 1 cut(s) | 686 |
| AspS9I | GGNCC | 1 cut(s) | 209 |
| AsuHPI | GGTGA | 7 cut(s) | 241, 341, 416, 482, 502, 599, 674 |
| AsuII | TTCGAA | 1 cut(s) | 593 |
| AvaII | GGWCC | 1 cut(s) | 209 |
| BauI | CACGAG | 1 cut(s) | 475 |
| Bbv12I | GWGCWC | 1 cut(s) | 163 |
| BbvI | GCAGC | 1 cut(s) | 134 |
| BccI | CCATC | 5 cut(s) | 57, 226, 245, 461, 578 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 37 |
| BclI | TGATCA | 1 cut(s) | 550 |
| BcoDI | GTCTC | 1 cut(s) | 472 |
| BfaI | CTAG | 1 cut(s) | 119 |
| BfoI | RGCGCY | 1 cut(s) | 687 |
| BisI | GCNGC | 2 cut(s) | 123, 687 |
| BlsI | GCNGC | 2 cut(s) | 124, 688 |
| Bme18I | GGWCC | 1 cut(s) | 209 |
| BmgT120I | GGNCC | 1 cut(s) | 209 |
| BmsI | GCATC | 1 cut(s) | 726 |
| Bpu14I | TTCGAA | 1 cut(s) | 593 |
| Bsa29I | ATCGAT | 1 cut(s) | 532 |
| BsaJI | CCNNGG | 2 cut(s) | 614, 623 |
| BsaWI | WCCGGW | 3 cut(s) | 98, 498, 578 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 155, 505 |
| Bse3DI | GCAATG | 1 cut(s) | 67 |
| BseAI | TCCGGA | 2 cut(s) | 98, 578 |
| BseCI | ATCGAT | 1 cut(s) | 532 |
| BseDI | CCNNGG | 2 cut(s) | 614, 623 |
| BseGI | GGATG | 4 cut(s) | 34, 256, 575, 712 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 155, 505 |
| BseMI | GCAATG | 1 cut(s) | 67 |
| BseXI | GCAGC | 1 cut(s) | 134 |
| Bsh1236I | CGCG | 1 cut(s) | 169 |
| BshVI | ATCGAT | 1 cut(s) | 532 |
| BsiHKAI | GWGCWC | 1 cut(s) | 163 |
| BsiSI | CCGG | 3 cut(s) | 99, 499, 579 |
| BslFI | GGGAC | 1 cut(s) | 113 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 155, 505 |
| BsmAI | GTCTC | 1 cut(s) | 472 |
| BsmFI | GGGAC | 1 cut(s) | 113 |
| BsmI | GAATGC | 1 cut(s) | 313 |
| Bsp119I | TTCGAA | 1 cut(s) | 593 |
| Bsp1286I | GDGCHC | 1 cut(s) | 163 |
| Bsp13I | TCCGGA | 2 cut(s) | 98, 578 |
| Bsp143I | GATC | 6 cut(s) | 353, 529, 533, 550, 604, 664 |
| Bsp68I | TCGCGA | 1 cut(s) | 169 |
| BspACI | CCGC | 3 cut(s) | 509, 588, 687 |
| BspDI | ATCGAT | 1 cut(s) | 532 |
| BspEI | TCCGGA | 2 cut(s) | 98, 578 |
| BspFNI | CGCG | 1 cut(s) | 169 |
| BspPI | GGATC | 1 cut(s) | 659 |
| BspQI | GCTCTTC | 1 cut(s) | 14 |
| BspT104I | TTCGAA | 1 cut(s) | 593 |
| BsrBI | CCGCTC | 1 cut(s) | 689 |
| BsrDI | GCAATG | 1 cut(s) | 67 |
| BssECI | CCNNGG | 2 cut(s) | 614, 623 |
| BssMI | GATC | 6 cut(s) | 353, 529, 533, 550, 604, 664 |
| BssSI | CACGAG | 1 cut(s) | 475 |
| BssT1I | CCWWGG | 2 cut(s) | 614, 623 |
| Bst2BI | CACGAG | 1 cut(s) | 475 |
| Bst4CI | ACNGT | 1 cut(s) | 566 |
| Bst6I | CTCTTC | 3 cut(s) | 14, 166, 337 |
| BstBI | TTCGAA | 1 cut(s) | 593 |
| BstC8I | GCNNGC | 3 cut(s) | 58, 79, 741 |
| BstDEI | CTNAG | 1 cut(s) | 371 |
| BstF5I | GGATG | 4 cut(s) | 34, 256, 575, 712 |
| BstFNI | CGCG | 1 cut(s) | 169 |
| BstH2I | RGCGCY | 1 cut(s) | 687 |
| BstHHI | GCGC | 1 cut(s) | 686 |
| BstKTI | GATC | 6 cut(s) | 356, 532, 536, 553, 607, 667 |
| BstMAI | GTCTC | 1 cut(s) | 472 |
| BstMBI | GATC | 6 cut(s) | 353, 529, 533, 550, 604, 664 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 319 |
| BstNSI | RCATGY | 1 cut(s) | 601 |
| BstUI | CGCG | 1 cut(s) | 169 |
| BstV1I | GCAGC | 1 cut(s) | 134 |
| Bsu15I | ATCGAT | 1 cut(s) | 532 |
| BsuTUI | ATCGAT | 1 cut(s) | 532 |
| BtsCI | GGATG | 4 cut(s) | 34, 256, 575, 712 |
| BtuMI | TCGCGA | 1 cut(s) | 169 |
| Cac8I | GCNNGC | 3 cut(s) | 58, 79, 741 |
| CfoI | GCGC | 1 cut(s) | 686 |
| Cfr13I | GGNCC | 1 cut(s) | 209 |
| ClaI | ATCGAT | 1 cut(s) | 532 |
| Csp6I | GTAC | 1 cut(s) | 650 |
| CviAII | CATG | 3 cut(s) | 301, 598, 653 |
| CviJI | RGCY | 7 cut(s) | 7, 67, 125, 146, 296, 460, 635 |
| CviKI_1 | RGCY | 7 cut(s) | 7, 67, 125, 146, 296, 460, 635 |
| CviQI | GTAC | 1 cut(s) | 650 |
| DdeI | CTNAG | 1 cut(s) | 371 |
| DpnI | GATC | 6 cut(s) | 355, 531, 535, 552, 606, 666 |
| DpnII | GATC | 6 cut(s) | 353, 529, 533, 550, 604, 664 |
| Eam1104I | CTCTTC | 3 cut(s) | 14, 166, 337 |
| EarI | CTCTTC | 3 cut(s) | 14, 166, 337 |
| Eco130I | CCWWGG | 2 cut(s) | 614, 623 |
| Eco47I | GGWCC | 1 cut(s) | 209 |
| EcoT14I | CCWWGG | 2 cut(s) | 614, 623 |
| ErhI | CCWWGG | 2 cut(s) | 614, 623 |
| FaeI | CATG | 3 cut(s) | 304, 601, 656 |
| FaiI | YATR | 8 cut(s) | 302, 516, 526, 549, 599, 654, 725, 746 |
| FaqI | GGGAC | 1 cut(s) | 113 |
| FatI | CATG | 3 cut(s) | 300, 597, 652 |
| FbaI | TGATCA | 1 cut(s) | 550 |
| Fnu4HI | GCNGC | 2 cut(s) | 123, 687 |
| FokI | GGATG | 4 cut(s) | 21, 263, 562, 719 |
| Fsp4HI | GCNGC | 2 cut(s) | 123, 687 |
| FspBI | CTAG | 1 cut(s) | 119 |
| GlaI | GCGC | 1 cut(s) | 685 |
| GluI | GCNGC | 2 cut(s) | 123, 687 |
| HaeII | RGCGCY | 1 cut(s) | 687 |
| HapII | CCGG | 3 cut(s) | 99, 499, 579 |
| HhaI | GCGC | 1 cut(s) | 686 |
| Hin1II | CATG | 3 cut(s) | 304, 601, 656 |
| Hin6I | GCGC | 1 cut(s) | 684 |
| HinP1I | GCGC | 1 cut(s) | 684 |
| HinfI | GANTC | 4 cut(s) | 304, 407, 719, 728 |
| HpaII | CCGG | 3 cut(s) | 99, 499, 579 |
| HphI | GGTGA | 7 cut(s) | 241, 341, 416, 482, 502, 599, 674 |
| Hpy166II | GTNNAC | 1 cut(s) | 349 |
| Hpy188I | TCNGA | 7 cut(s) | 14, 45, 158, 213, 412, 464, 693 |
| Hpy188III | TCNNGA | 4 cut(s) | 99, 168, 357, 579 |
| Hpy8I | GTNNAC | 1 cut(s) | 349 |
| HpyAV | CCTTC | 3 cut(s) | 159, 684, 688 |
| HpyCH4III | ACNGT | 1 cut(s) | 566 |
| HpyCH4IV | ACGT | 1 cut(s) | 325 |
| HpyCH4V | TGCA | 6 cut(s) | 24, 60, 77, 271, 313, 601 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 319 |
| HpyF3I | CTNAG | 1 cut(s) | 371 |
| HpySE526I | ACGT | 1 cut(s) | 325 |
| Hsp92II | CATG | 3 cut(s) | 304, 601, 656 |
| HspAI | GCGC | 1 cut(s) | 684 |
| Kpn2I | TCCGGA | 2 cut(s) | 98, 578 |
| Ksp22I | TGATCA | 1 cut(s) | 550 |
| Kzo9I | GATC | 6 cut(s) | 353, 529, 533, 550, 604, 664 |
| LguI | GCTCTTC | 1 cut(s) | 14 |
| LmnI | GCTCC | 3 cut(s) | 151, 158, 397 |
| LpnPI | CCDG | 4 cut(s) | 112, 386, 512, 592 |
| Lsp1109I | GCAGC | 1 cut(s) | 134 |
| LweI | GCATC | 1 cut(s) | 726 |
| MaeI | CTAG | 1 cut(s) | 119 |
| MaeII | ACGT | 1 cut(s) | 325 |
| MaeIII | GTNAC | 4 cut(s) | 335, 470, 558, 700 |
| MalI | GATC | 6 cut(s) | 355, 531, 535, 552, 606, 666 |
| MbiI | CCGCTC | 1 cut(s) | 689 |
| MboI | GATC | 6 cut(s) | 353, 529, 533, 550, 604, 664 |
| MboII | GAAGA | 5 cut(s) | 183, 201, 204, 354, 427 |
| MhlI | GDGCHC | 1 cut(s) | 163 |
| MluCI | AATT | 1 cut(s) | 85 |
| MlyI | GAGTC | 1 cut(s) | 722 |
| MnlI | CCTC | 6 cut(s) | 200, 277, 450, 495, 621, 625 |
| MroI | TCCGGA | 2 cut(s) | 98, 578 |
| MroXI | GAANNNNTTC | 1 cut(s) | 8 |
| MseI | TTAA | 2 cut(s) | 266, 363 |
| MslI | CAYNNNNRTG | 1 cut(s) | 546 |
| MspA1I | CMGCKG | 1 cut(s) | 125 |
| MspI | CCGG | 3 cut(s) | 99, 499, 579 |
| Mva1269I | GAATGC | 1 cut(s) | 313 |
| MvnI | CGCG | 1 cut(s) | 169 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 319 |
| NdeII | GATC | 6 cut(s) | 353, 529, 533, 550, 604, 664 |
| NlaIII | CATG | 3 cut(s) | 304, 601, 656 |
| NmuCI | GTSAC | 4 cut(s) | 335, 470, 558, 700 |
| NruI | TCGCGA | 1 cut(s) | 169 |
| NspI | RCATGY | 1 cut(s) | 601 |
| NspV | TTCGAA | 1 cut(s) | 593 |
| PciSI | GCTCTTC | 1 cut(s) | 14 |
| PctI | GAATGC | 1 cut(s) | 313 |
| PdmI | GAANNNNTTC | 1 cut(s) | 8 |
| PfeI | GAWTC | 3 cut(s) | 304, 407, 719 |
| PkrI | GCNGC | 2 cut(s) | 124, 688 |
| PleI | GAGTC | 1 cut(s) | 722 |
| PpsI | GAGTC | 1 cut(s) | 722 |
| PspPI | GGNCC | 1 cut(s) | 209 |
| PvuII | CAGCTG | 1 cut(s) | 125 |
| RruI | TCGCGA | 1 cut(s) | 169 |
| RsaI | GTAC | 1 cut(s) | 651 |
| RsaNI | GTAC | 1 cut(s) | 650 |
| RseI | CAYNNNNRTG | 1 cut(s) | 546 |
| SapI | GCTCTTC | 1 cut(s) | 14 |
| SaqAI | TTAA | 2 cut(s) | 266, 363 |
| SatI | GCNGC | 2 cut(s) | 123, 687 |
| Sau3AI | GATC | 6 cut(s) | 353, 529, 533, 550, 604, 664 |
| Sau96I | GGNCC | 1 cut(s) | 209 |
| SchI | GAGTC | 1 cut(s) | 722 |
| SduI | GDGCHC | 1 cut(s) | 163 |
| SfaNI | GCATC | 1 cut(s) | 726 |
| SfuI | TTCGAA | 1 cut(s) | 593 |
| SinI | GGWCC | 1 cut(s) | 209 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 546 |
| Sse9I | AATT | 1 cut(s) | 85 |
| SsiI | CCGC | 3 cut(s) | 509, 588, 687 |
| SspMI | CTAG | 1 cut(s) | 119 |
| StyI | CCWWGG | 2 cut(s) | 614, 623 |
| TaaI | ACNGT | 1 cut(s) | 566 |
| TaiI | ACGT | 1 cut(s) | 328 |
| TaqI | TCGA | 4 cut(s) | 358, 455, 532, 593 |
| TaqII | GACCGA | 1 cut(s) | 354 |
| TasI | AATT | 1 cut(s) | 85 |
| TauI | GCSGC | 1 cut(s) | 689 |
| TfiI | GAWTC | 3 cut(s) | 304, 407, 719 |
| Tru1I | TTAA | 2 cut(s) | 266, 363 |
| Tru9I | TTAA | 2 cut(s) | 266, 363 |
| TseFI | GTSAC | 4 cut(s) | 335, 470, 558, 700 |
| TseI | GCWGC | 1 cut(s) | 122 |
| Tsp45I | GTSAC | 4 cut(s) | 335, 470, 558, 700 |
| TspDTI | ATGAA | 5 cut(s) | 17, 23, 155, 317, 669 |
| TspGWI | ACGGA | 2 cut(s) | 19, 719 |
| VpaK11BI | GGWCC | 1 cut(s) | 209 |
| XceI | RCATGY | 1 cut(s) | 601 |
| XmnI | GAANNNNTTC | 1 cut(s) | 8 |
| XspI | CTAG | 1 cut(s) | 119 |