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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 325 |
| Acc36I | ACCTGC | 1 cut(s) | 325 |
| AccB1I | GGYRCC | 1 cut(s) | 173 |
| AccII | CGCG | 1 cut(s) | 72 |
| AciI | CCGC | 8 cut(s) | 12, 67, 70, 229, 316, 319, 358, 369 |
| AclWI | GGATC | 2 cut(s) | 239, 255 |
| AcyI | GRCGYC | 2 cut(s) | 155, 326 |
| AfaI | GTAC | 1 cut(s) | 412 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 164 |
| AgeI | ACCGGT | 1 cut(s) | 176 |
| AgsI | TTSAA | 1 cut(s) | 440 |
| AjnI | CCWGG | 1 cut(s) | 60 |
| AluBI | AGCT | 1 cut(s) | 97 |
| AluI | AGCT | 1 cut(s) | 97 |
| Alw21I | GWGCWC | 1 cut(s) | 99 |
| AlwI | GGATC | 2 cut(s) | 239, 255 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 355 |
| Ama87I | CYCGRG | 1 cut(s) | 269 |
| AoxI | GGCC | 1 cut(s) | 64 |
| ApeKI | GCWGC | 4 cut(s) | 200, 313, 343, 355 |
| AsiGI | ACCGGT | 1 cut(s) | 176 |
| AspS9I | GGNCC | 1 cut(s) | 64 |
| AvaI | CYCGRG | 1 cut(s) | 269 |
| BanI | GGYRCC | 1 cut(s) | 173 |
| BanII | GRGCYC | 1 cut(s) | 99 |
| Bbv12I | GWGCWC | 1 cut(s) | 99 |
| BbvI | GCAGC | 4 cut(s) | 187, 325, 330, 342 |
| BccI | CCATC | 3 cut(s) | 14, 268, 275 |
| BceAI | ACGGC | 1 cut(s) | 142 |
| BciT130I | CCWGG | 1 cut(s) | 62 |
| BfaI | CTAG | 2 cut(s) | 123, 384 |
| BfuAI | ACCTGC | 1 cut(s) | 325 |
| BglII | AGATCT | 1 cut(s) | 119 |
| BisI | GCNGC | 8 cut(s) | 67, 70, 201, 314, 317, 344, 356, 359 |
| BlsI | GCNGC | 8 cut(s) | 68, 71, 202, 315, 318, 345, 357, 360 |
| Bme1390I | CCNGG | 1 cut(s) | 62 |
| BmeT110I | CYCGRG | 1 cut(s) | 269 |
| BmgT120I | GGNCC | 1 cut(s) | 64 |
| BmiI | GGNNCC | 1 cut(s) | 175 |
| BmrFI | CCNGG | 1 cut(s) | 62 |
| Bpu10I | CCTNAGC | 1 cut(s) | 149 |
| BsaAI | YACGTR | 1 cut(s) | 434 |
| BsaHI | GRCGYC | 2 cut(s) | 155, 326 |
| BsaJI | CCNNGG | 1 cut(s) | 61 |
| BsaWI | WCCGGW | 1 cut(s) | 176 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 164 |
| Bse118I | RCCGGY | 1 cut(s) | 176 |
| BseBI | CCWGG | 1 cut(s) | 62 |
| BseDI | CCNNGG | 1 cut(s) | 61 |
| BseGI | GGATG | 2 cut(s) | 286, 393 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 164 |
| BseRI | GAGGAG | 2 cut(s) | 104, 107 |
| BseXI | GCAGC | 4 cut(s) | 187, 325, 330, 342 |
| BseYI | CCCAGC | 2 cut(s) | 163, 285 |
| Bsh1236I | CGCG | 1 cut(s) | 72 |
| BshFI | GGCC | 1 cut(s) | 66 |
| BshNI | GGYRCC | 1 cut(s) | 173 |
| BshTI | ACCGGT | 1 cut(s) | 176 |
| BsiHKAI | GWGCWC | 1 cut(s) | 99 |
| BsiHKCI | CYCGRG | 1 cut(s) | 269 |
| BsiSI | CCGG | 1 cut(s) | 177 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 164 |
| BsnI | GGCC | 1 cut(s) | 66 |
| BsoBI | CYCGRG | 1 cut(s) | 269 |
| Bsp1286I | GDGCHC | 1 cut(s) | 99 |
| Bsp1407I | TGTACA | 1 cut(s) | 410 |
| Bsp143I | GATC | 4 cut(s) | 119, 231, 260, 265 |
| BspACI | CCGC | 8 cut(s) | 12, 67, 70, 229, 316, 319, 358, 369 |
| BspANI | GGCC | 1 cut(s) | 66 |
| BspFNI | CGCG | 1 cut(s) | 72 |
| BspLI | GGNNCC | 1 cut(s) | 175 |
| BspMI | ACCTGC | 1 cut(s) | 325 |
| BspPI | GGATC | 2 cut(s) | 239, 255 |
| BspT107I | GGYRCC | 1 cut(s) | 173 |
| BsrFI | RCCGGY | 1 cut(s) | 176 |
| BsrGI | TGTACA | 1 cut(s) | 410 |
| BssAI | RCCGGY | 1 cut(s) | 176 |
| BssECI | CCNNGG | 1 cut(s) | 61 |
| BssMI | GATC | 4 cut(s) | 119, 231, 260, 265 |
| BssNI | GRCGYC | 2 cut(s) | 155, 326 |
| Bst2UI | CCWGG | 1 cut(s) | 62 |
| Bst4CI | ACNGT | 1 cut(s) | 109 |
| BstACI | GRCGYC | 2 cut(s) | 155, 326 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 340 |
| BstAUI | TGTACA | 1 cut(s) | 410 |
| BstBAI | YACGTR | 1 cut(s) | 434 |
| BstDEI | CTNAG | 1 cut(s) | 149 |
| BstF5I | GGATG | 2 cut(s) | 286, 393 |
| BstFNI | CGCG | 1 cut(s) | 72 |
| BstKTI | GATC | 4 cut(s) | 122, 234, 263, 268 |
| BstMBI | GATC | 4 cut(s) | 119, 231, 260, 265 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 154, 340, 352, 380 |
| BstNI | CCWGG | 1 cut(s) | 62 |
| BstSCI | CCNGG | 1 cut(s) | 60 |
| BstUI | CGCG | 1 cut(s) | 72 |
| BstV1I | GCAGC | 4 cut(s) | 187, 325, 330, 342 |
| BstX2I | RGATCY | 3 cut(s) | 119, 231, 260 |
| BstYI | RGATCY | 3 cut(s) | 119, 231, 260 |
| BsuRI | GGCC | 1 cut(s) | 66 |
| BtsCI | GGATG | 2 cut(s) | 286, 393 |
| BtsIMutI | CAGTG | 1 cut(s) | 105 |
| BveI | ACCTGC | 1 cut(s) | 325 |
| CaiI | CAGNNNCTG | 1 cut(s) | 355 |
| Cfr10I | RCCGGY | 1 cut(s) | 176 |
| Cfr13I | GGNCC | 1 cut(s) | 64 |
| CseI | GACGC | 2 cut(s) | 163, 315 |
| Csp6I | GTAC | 1 cut(s) | 411 |
| CspAI | ACCGGT | 1 cut(s) | 176 |
| CviAII | CATG | 2 cut(s) | 43, 100 |
| CviJI | RGCY | 8 cut(s) | 66, 97, 285, 290, 361, 374, 400, 419 |
| CviKI_1 | RGCY | 8 cut(s) | 66, 97, 285, 290, 361, 374, 400, 419 |
| CviQI | GTAC | 1 cut(s) | 411 |
| DdeI | CTNAG | 1 cut(s) | 149 |
| DpnI | GATC | 4 cut(s) | 121, 233, 262, 267 |
| DpnII | GATC | 4 cut(s) | 119, 231, 260, 265 |
| EciI | GGCGGA | 1 cut(s) | 244 |
| Ecl136II | GAGCTC | 1 cut(s) | 97 |
| Eco24I | GRGCYC | 1 cut(s) | 99 |
| Eco53kI | GAGCTC | 1 cut(s) | 97 |
| Eco88I | CYCGRG | 1 cut(s) | 269 |
| EcoICRI | GAGCTC | 1 cut(s) | 97 |
| EcoRII | CCWGG | 1 cut(s) | 60 |
| EcoT38I | GRGCYC | 1 cut(s) | 99 |
| FaeI | CATG | 2 cut(s) | 46, 103 |
| FaiI | YATR | 2 cut(s) | 44, 101 |
| FatI | CATG | 2 cut(s) | 42, 99 |
| FauI | CCCGC | 2 cut(s) | 312, 362 |
| Fnu4HI | GCNGC | 8 cut(s) | 67, 70, 201, 314, 317, 344, 356, 359 |
| FokI | GGATG | 2 cut(s) | 293, 400 |
| FriOI | GRGCYC | 1 cut(s) | 99 |
| Fsp4HI | GCNGC | 8 cut(s) | 67, 70, 201, 314, 317, 344, 356, 359 |
| FspBI | CTAG | 2 cut(s) | 123, 384 |
| GluI | GCNGC | 8 cut(s) | 67, 70, 201, 314, 317, 344, 356, 359 |
| GsaI | CCCAGC | 2 cut(s) | 167, 289 |
| HaeIII | GGCC | 1 cut(s) | 66 |
| HapII | CCGG | 1 cut(s) | 177 |
| HgaI | GACGC | 2 cut(s) | 163, 315 |
| Hin1I | GRCGYC | 2 cut(s) | 155, 326 |
| Hin1II | CATG | 2 cut(s) | 46, 103 |
| HincII | GTYRAC | 1 cut(s) | 307 |
| HindII | GTYRAC | 1 cut(s) | 307 |
| HpaII | CCGG | 1 cut(s) | 177 |
| Hpy166II | GTNNAC | 2 cut(s) | 307, 431 |
| Hpy188I | TCNGA | 2 cut(s) | 135, 265 |
| Hpy188III | TCNNGA | 3 cut(s) | 258, 269, 271 |
| Hpy8I | GTNNAC | 2 cut(s) | 307, 431 |
| Hpy99I | CGWCG | 2 cut(s) | 163, 302 |
| HpyAV | CCTTC | 2 cut(s) | 76, 211 |
| HpyCH4III | ACNGT | 1 cut(s) | 109 |
| HpyCH4IV | ACGT | 1 cut(s) | 433 |
| HpyCH4V | TGCA | 1 cut(s) | 334 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 154, 340, 352, 380 |
| HpyF3I | CTNAG | 1 cut(s) | 149 |
| HpySE526I | ACGT | 1 cut(s) | 433 |
| Hsp92I | GRCGYC | 2 cut(s) | 155, 326 |
| Hsp92II | CATG | 2 cut(s) | 46, 103 |
| Kzo9I | GATC | 4 cut(s) | 119, 231, 260, 265 |
| LmnI | GCTCC | 1 cut(s) | 94 |
| Lsp1109I | GCAGC | 4 cut(s) | 187, 325, 330, 342 |
| MaeI | CTAG | 2 cut(s) | 123, 384 |
| MaeII | ACGT | 1 cut(s) | 433 |
| MaeIII | GTNAC | 1 cut(s) | 103 |
| MalI | GATC | 4 cut(s) | 121, 233, 262, 267 |
| MboI | GATC | 4 cut(s) | 119, 231, 260, 265 |
| MboII | GAAGA | 1 cut(s) | 129 |
| MfeI | CAATTG | 1 cut(s) | 378 |
| MflI | RGATCY | 3 cut(s) | 119, 231, 260 |
| MhlI | GDGCHC | 1 cut(s) | 99 |
| MluCI | AATT | 2 cut(s) | 74, 378 |
| MmeI | TCCRAC | 1 cut(s) | 113 |
| MnlI | CCTC | 7 cut(s) | 20, 50, 72, 82, 85, 198, 271 |
| MspA1I | CMGCKG | 1 cut(s) | 316 |
| MspI | CCGG | 1 cut(s) | 177 |
| MspR9I | CCNGG | 1 cut(s) | 62 |
| MunI | CAATTG | 1 cut(s) | 378 |
| MvaI | CCWGG | 1 cut(s) | 62 |
| MvnI | CGCG | 1 cut(s) | 72 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 154, 340, 352, 380 |
| NdeII | GATC | 4 cut(s) | 119, 231, 260, 265 |
| NlaIII | CATG | 2 cut(s) | 46, 103 |
| NlaIV | GGNNCC | 1 cut(s) | 175 |
| NmeAIII | GCCGAG | 1 cut(s) | 345 |
| NmuCI | GTSAC | 1 cut(s) | 103 |
| PaeR7I | CTCGAG | 1 cut(s) | 269 |
| PaqCI | CACCTGC | 1 cut(s) | 325 |
| PflFI | GACNNNGTC | 1 cut(s) | 157 |
| PinAI | ACCGGT | 1 cut(s) | 176 |
| PkrI | GCNGC | 8 cut(s) | 68, 71, 202, 315, 318, 345, 357, 360 |
| Ppu21I | YACGTR | 1 cut(s) | 434 |
| Psp124BI | GAGCTC | 1 cut(s) | 99 |
| Psp6I | CCWGG | 1 cut(s) | 60 |
| PspFI | CCCAGC | 2 cut(s) | 163, 285 |
| PspGI | CCWGG | 1 cut(s) | 60 |
| PspN4I | GGNNCC | 1 cut(s) | 175 |
| PspPI | GGNCC | 1 cut(s) | 64 |
| PstNI | CAGNNNCTG | 1 cut(s) | 355 |
| PsuI | RGATCY | 3 cut(s) | 119, 231, 260 |
| PsyI | GACNNNGTC | 1 cut(s) | 157 |
| RsaI | GTAC | 1 cut(s) | 412 |
| RsaNI | GTAC | 1 cut(s) | 411 |
| SacI | GAGCTC | 1 cut(s) | 99 |
| SatI | GCNGC | 8 cut(s) | 67, 70, 201, 314, 317, 344, 356, 359 |
| Sau3AI | GATC | 4 cut(s) | 119, 231, 260, 265 |
| Sau96I | GGNCC | 1 cut(s) | 64 |
| ScrFI | CCNGG | 1 cut(s) | 62 |
| SduI | GDGCHC | 1 cut(s) | 99 |
| SetI | ASST | 7 cut(s) | 31, 63, 87, 99, 339, 354, 436 |
| Sfr274I | CTCGAG | 1 cut(s) | 269 |
| SlaI | CTCGAG | 1 cut(s) | 269 |
| SmlI | CTYRAG | 1 cut(s) | 269 |
| SmoI | CTYRAG | 1 cut(s) | 269 |
| Sse9I | AATT | 2 cut(s) | 74, 378 |
| SsiI | CCGC | 8 cut(s) | 12, 67, 70, 229, 316, 319, 358, 369 |
| SspMI | CTAG | 2 cut(s) | 123, 384 |
| SstI | GAGCTC | 1 cut(s) | 99 |
| StyD4I | CCNGG | 1 cut(s) | 60 |
| TaaI | ACNGT | 1 cut(s) | 109 |
| TaiI | ACGT | 1 cut(s) | 436 |
| TaqI | TCGA | 3 cut(s) | 57, 215, 270 |
| TasI | AATT | 2 cut(s) | 74, 378 |
| TatI | WGTACW | 1 cut(s) | 410 |
| TauI | GCSGC | 4 cut(s) | 69, 72, 319, 361 |
| TscAI | CASTG | 1 cut(s) | 112 |
| TseFI | GTSAC | 1 cut(s) | 103 |
| TseI | GCWGC | 4 cut(s) | 200, 313, 343, 355 |
| Tsp45I | GTSAC | 1 cut(s) | 103 |
| TspRI | CASTG | 1 cut(s) | 112 |
| Tth111I | GACNNNGTC | 1 cut(s) | 157 |
| XhoI | CTCGAG | 1 cut(s) | 269 |
| XspI | CTAG | 2 cut(s) | 123, 384 |