BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 386 |
| AccB1I | GGYRCC | 1 cut(s) | 761 |
| AccI | GTMKAC | 1 cut(s) | 578 |
| AciI | CCGC | 2 cut(s) | 765, 811 |
| AclWI | GGATC | 6 cut(s) | 565, 636, 686, 699, 825, 838 |
| AcsI | RAATTY | 4 cut(s) | 25, 230, 719, 877 |
| AcuI | CTGAAG | 3 cut(s) | 480, 1148, 1160 |
| AfaI | GTAC | 6 cut(s) | 68, 88, 522, 997, 1053, 1157 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1167 |
| AflII | CTTAAG | 1 cut(s) | 754 |
| AflIII | ACRYGT | 2 cut(s) | 73, 865 |
| AgsI | TTSAA | 7 cut(s) | 22, 367, 377, 442, 776, 863, 914 |
| AjnI | CCWGG | 2 cut(s) | 986, 1025 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 201, 233, 1104, 1136 |
| AluBI | AGCT | 4 cut(s) | 192, 197, 316, 1167 |
| AluI | AGCT | 4 cut(s) | 192, 197, 316, 1167 |
| Alw26I | GTCTC | 1 cut(s) | 1176 |
| AlwI | GGATC | 6 cut(s) | 565, 636, 686, 699, 825, 838 |
| AoxI | GGCC | 1 cut(s) | 1123 |
| ApeKI | GCWGC | 1 cut(s) | 683 |
| ApoI | RAATTY | 4 cut(s) | 25, 230, 719, 877 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 632 |
| AspS9I | GGNCC | 1 cut(s) | 106 |
| AsuII | TTCGAA | 1 cut(s) | 54 |
| AvaII | GGWCC | 1 cut(s) | 106 |
| AxyI | CCTNAGG | 1 cut(s) | 741 |
| BamHI | GGATCC | 2 cut(s) | 691, 830 |
| BanI | GGYRCC | 1 cut(s) | 761 |
| BbsI | GAAGAC | 1 cut(s) | 384 |
| BbvI | GCAGC | 1 cut(s) | 695 |
| BccI | CCATC | 5 cut(s) | 26, 532, 587, 842, 1024 |
| BciT130I | CCWGG | 2 cut(s) | 988, 1027 |
| BciVI | GTATCC | 1 cut(s) | 1023 |
| BclI | TGATCA | 1 cut(s) | 139 |
| BcoDI | GTCTC | 1 cut(s) | 1176 |
| BfaI | CTAG | 3 cut(s) | 480, 696, 852 |
| BfmI | CTRYAG | 2 cut(s) | 9, 681 |
| BfrI | CTTAAG | 1 cut(s) | 754 |
| BfuI | GTATCC | 1 cut(s) | 1023 |
| BisI | GCNGC | 2 cut(s) | 684, 765 |
| BlpI | GCTNAGC | 1 cut(s) | 193 |
| BlsI | GCNGC | 2 cut(s) | 685, 766 |
| BmcAI | AGTACT | 1 cut(s) | 997 |
| Bme1390I | CCNGG | 2 cut(s) | 988, 1027 |
| Bme18I | GGWCC | 1 cut(s) | 106 |
| BmgT120I | GGNCC | 1 cut(s) | 106 |
| BmiI | GGNNCC | 4 cut(s) | 107, 693, 763, 832 |
| BmrFI | CCNGG | 2 cut(s) | 988, 1027 |
| BmsI | GCATC | 3 cut(s) | 309, 349, 1131 |
| BpiI | GAAGAC | 1 cut(s) | 384 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 193 |
| Bpu14I | TTCGAA | 1 cut(s) | 54 |
| BpuEI | CTTGAG | 2 cut(s) | 551, 992 |
| BsaI | GGTCTC | 1 cut(s) | 1176 |
| BsaJI | CCNNGG | 1 cut(s) | 959 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 936, 966 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1167 |
| Bse1I | ACTGG | 4 cut(s) | 574, 693, 904, 1103 |
| Bse21I | CCTNAGG | 1 cut(s) | 741 |
| BseBI | CCWGG | 2 cut(s) | 988, 1027 |
| BseDI | CCNNGG | 1 cut(s) | 959 |
| BseGI | GGATG | 3 cut(s) | 364, 524, 1035 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1167 |
| BseMII | CTCAG | 5 cut(s) | 81, 146, 207, 441, 603 |
| BseNI | ACTGG | 4 cut(s) | 574, 693, 904, 1103 |
| BseRI | GAGGAG | 1 cut(s) | 800 |
| BseXI | GCAGC | 1 cut(s) | 695 |
| BshFI | GGCC | 1 cut(s) | 1125 |
| BshNI | GGYRCC | 1 cut(s) | 761 |
| BslFI | GGGAC | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1167 |
| BsmAI | GTCTC | 1 cut(s) | 1176 |
| BsmFI | GGGAC | 1 cut(s) | 119 |
| BsmI | GAATGC | 2 cut(s) | 362, 1082 |
| BsnI | GGCC | 1 cut(s) | 1125 |
| Bso31I | GGTCTC | 1 cut(s) | 1176 |
| Bsp119I | TTCGAA | 1 cut(s) | 54 |
| Bsp1407I | TGTACA | 1 cut(s) | 1155 |
| Bsp143I | GATC | 5 cut(s) | 139, 570, 641, 691, 830 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 193 |
| BspACI | CCGC | 2 cut(s) | 765, 811 |
| BspANI | GGCC | 1 cut(s) | 1125 |
| BspCNI | CTCAG | 5 cut(s) | 82, 147, 206, 442, 602 |
| BspHI | TCATGA | 1 cut(s) | 636 |
| BspLI | GGNNCC | 4 cut(s) | 107, 693, 763, 832 |
| BspMAI | CTGCAG | 1 cut(s) | 685 |
| BspPI | GGATC | 6 cut(s) | 565, 636, 686, 699, 825, 838 |
| BspT104I | TTCGAA | 1 cut(s) | 54 |
| BspT107I | GGYRCC | 1 cut(s) | 761 |
| BspTI | CTTAAG | 1 cut(s) | 754 |
| BspTNI | GGTCTC | 1 cut(s) | 1176 |
| BsrGI | TGTACA | 1 cut(s) | 1155 |
| BsrI | ACTGG | 4 cut(s) | 574, 693, 904, 1103 |
| BssECI | CCNNGG | 1 cut(s) | 959 |
| BssMI | GATC | 5 cut(s) | 139, 570, 641, 691, 830 |
| BssNAI | GTATAC | 1 cut(s) | 579 |
| BssT1I | CCWWGG | 1 cut(s) | 959 |
| Bst1107I | GTATAC | 1 cut(s) | 579 |
| Bst2UI | CCWGG | 2 cut(s) | 988, 1027 |
| Bst4CI | ACNGT | 3 cut(s) | 86, 256, 340 |
| Bst6I | CTCTTC | 2 cut(s) | 864, 1179 |
| BstAFI | CTTAAG | 1 cut(s) | 754 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 680 |
| BstAUI | TGTACA | 1 cut(s) | 1155 |
| BstBI | TTCGAA | 1 cut(s) | 54 |
| BstC8I | GCNNGC | 3 cut(s) | 623, 1003, 1146 |
| BstDEI | CTNAG | 6 cut(s) | 90, 155, 193, 450, 589, 741 |
| BstF5I | GGATG | 3 cut(s) | 364, 524, 1035 |
| BstKTI | GATC | 5 cut(s) | 142, 573, 644, 694, 833 |
| BstMAI | GTCTC | 1 cut(s) | 1176 |
| BstMBI | GATC | 5 cut(s) | 139, 570, 641, 691, 830 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 680 |
| BstNI | CCWGG | 2 cut(s) | 988, 1027 |
| BstNSI | RCATGY | 3 cut(s) | 77, 625, 869 |
| BstSCI | CCNGG | 2 cut(s) | 986, 1025 |
| BstSFI | CTRYAG | 2 cut(s) | 9, 681 |
| BstV1I | GCAGC | 1 cut(s) | 695 |
| BstV2I | GAAGAC | 1 cut(s) | 384 |
| BstX2I | RGATCY | 3 cut(s) | 641, 691, 830 |
| BstYI | RGATCY | 3 cut(s) | 641, 691, 830 |
| BstZ17I | GTATAC | 1 cut(s) | 579 |
| Bsu36I | CCTNAGG | 1 cut(s) | 741 |
| BsuI | GTATCC | 1 cut(s) | 1023 |
| BsuRI | GGCC | 1 cut(s) | 1125 |
| BtsCI | GGATG | 3 cut(s) | 364, 524, 1035 |
| BtsIMutI | CAGTG | 3 cut(s) | 349, 686, 844 |
| Cac8I | GCNNGC | 3 cut(s) | 623, 1003, 1146 |
| CciI | TCATGA | 1 cut(s) | 636 |
| Cfr13I | GGNCC | 1 cut(s) | 106 |
| CsiI | ACCWGGT | 1 cut(s) | 986 |
| Csp6I | GTAC | 6 cut(s) | 67, 87, 521, 996, 1052, 1156 |
| CviAII | CATG | 7 cut(s) | 74, 110, 203, 432, 622, 637, 866 |
| CviQI | GTAC | 6 cut(s) | 67, 87, 521, 996, 1052, 1156 |
| DdeI | CTNAG | 6 cut(s) | 90, 155, 193, 450, 589, 741 |
| DpnI | GATC | 5 cut(s) | 141, 572, 643, 693, 832 |
| DpnII | GATC | 5 cut(s) | 139, 570, 641, 691, 830 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 386 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 386 |
| Eam1104I | CTCTTC | 2 cut(s) | 864, 1179 |
| EarI | CTCTTC | 2 cut(s) | 864, 1179 |
| Eco130I | CCWWGG | 1 cut(s) | 959 |
| Eco31I | GGTCTC | 1 cut(s) | 1176 |
| Eco47I | GGWCC | 1 cut(s) | 106 |
| Eco57I | CTGAAG | 3 cut(s) | 480, 1148, 1160 |
| Eco81I | CCTNAGG | 1 cut(s) | 741 |
| EcoRII | CCWGG | 2 cut(s) | 986, 1025 |
| EcoT14I | CCWWGG | 1 cut(s) | 959 |
| EcoT22I | ATGCAT | 1 cut(s) | 364 |
| ErhI | CCWWGG | 1 cut(s) | 959 |
| FaeI | CATG | 7 cut(s) | 77, 113, 206, 435, 625, 640, 869 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1121, 1153 |
| FaqI | GGGAC | 1 cut(s) | 119 |
| FatI | CATG | 7 cut(s) | 73, 109, 202, 431, 621, 636, 865 |
| FauNDI | CATATG | 2 cut(s) | 665, 1075 |
| FbaI | TGATCA | 1 cut(s) | 139 |
| FblI | GTMKAC | 1 cut(s) | 578 |
| Fnu4HI | GCNGC | 2 cut(s) | 684, 765 |
| FokI | GGATG | 3 cut(s) | 371, 511, 1042 |
| Fsp4HI | GCNGC | 2 cut(s) | 684, 765 |
| FspBI | CTAG | 3 cut(s) | 480, 696, 852 |
| GluI | GCNGC | 2 cut(s) | 684, 765 |
| HaeIII | GGCC | 1 cut(s) | 1125 |
| Hin1II | CATG | 7 cut(s) | 77, 113, 206, 435, 625, 640, 869 |
| HincII | GTYRAC | 1 cut(s) | 172 |
| HindII | GTYRAC | 1 cut(s) | 172 |
| HinfI | GANTC | 5 cut(s) | 280, 750, 842, 871, 964 |
| Hpy166II | GTNNAC | 3 cut(s) | 172, 579, 1158 |
| Hpy188I | TCNGA | 6 cut(s) | 144, 274, 392, 451, 592, 925 |
| Hpy188III | TCNNGA | 8 cut(s) | 284, 356, 398, 498, 568, 637, 818, 968 |
| Hpy8I | GTNNAC | 3 cut(s) | 172, 579, 1158 |
| HpyCH4III | ACNGT | 3 cut(s) | 86, 256, 340 |
| HpyCH4IV | ACGT | 1 cut(s) | 519 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 680 |
| HpyF3I | CTNAG | 6 cut(s) | 90, 155, 193, 450, 589, 741 |
| HpySE526I | ACGT | 1 cut(s) | 519 |
| Hsp92II | CATG | 7 cut(s) | 77, 113, 206, 435, 625, 640, 869 |
| Ksp22I | TGATCA | 1 cut(s) | 139 |
| Kzo9I | GATC | 5 cut(s) | 139, 570, 641, 691, 830 |
| Lsp1109I | GCAGC | 1 cut(s) | 695 |
| LweI | GCATC | 3 cut(s) | 309, 349, 1131 |
| MabI | ACCWGGT | 1 cut(s) | 986 |
| MaeI | CTAG | 3 cut(s) | 480, 696, 852 |
| MaeII | ACGT | 1 cut(s) | 519 |
| MaeIII | GTNAC | 3 cut(s) | 80, 248, 954 |
| MalI | GATC | 5 cut(s) | 141, 572, 643, 693, 832 |
| MboI | GATC | 5 cut(s) | 139, 570, 641, 691, 830 |
| MboII | GAAGA | 7 cut(s) | 49, 218, 317, 389, 553, 851, 1166 |
| MfeI | CAATTG | 1 cut(s) | 1115 |
| MflI | RGATCY | 3 cut(s) | 641, 691, 830 |
| MluCI | AATT | 8 cut(s) | 25, 145, 230, 275, 470, 719, 877, 1115 |
| MlyI | GAGTC | 2 cut(s) | 274, 973 |
| MmeI | TCCRAC | 2 cut(s) | 370, 1040 |
| MnlI | CCTC | 9 cut(s) | 56, 96, 131, 280, 439, 494, 778, 820, 1016 |
| Mph1103I | ATGCAT | 1 cut(s) | 364 |
| MroXI | GAANNNNTTC | 1 cut(s) | 632 |
| MseI | TTAA | 8 cut(s) | 62, 180, 245, 455, 603, 702, 755, 983 |
| MslI | CAYNNNNRTG | 2 cut(s) | 78, 591 |
| MspA1I | CMGCKG | 1 cut(s) | 767 |
| MspCI | CTTAAG | 1 cut(s) | 754 |
| MspR9I | CCNGG | 2 cut(s) | 988, 1027 |
| MunI | CAATTG | 1 cut(s) | 1115 |
| Mva1269I | GAATGC | 2 cut(s) | 362, 1082 |
| MvaI | CCWGG | 2 cut(s) | 988, 1027 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 680 |
| NdeI | CATATG | 2 cut(s) | 665, 1075 |
| NdeII | GATC | 5 cut(s) | 139, 570, 641, 691, 830 |
| NlaIII | CATG | 7 cut(s) | 77, 113, 206, 435, 625, 640, 869 |
| NlaIV | GGNNCC | 4 cut(s) | 107, 693, 763, 832 |
| NmuCI | GTSAC | 2 cut(s) | 80, 248 |
| NsiI | ATGCAT | 1 cut(s) | 364 |
| NspI | RCATGY | 3 cut(s) | 77, 625, 869 |
| NspV | TTCGAA | 1 cut(s) | 54 |
| PaeI | GCATGC | 1 cut(s) | 625 |
| PagI | TCATGA | 1 cut(s) | 636 |
| PciI | ACATGT | 2 cut(s) | 73, 865 |
| PctI | GAATGC | 2 cut(s) | 362, 1082 |
| PdmI | GAANNNNTTC | 1 cut(s) | 632 |
| PfeI | GAWTC | 3 cut(s) | 750, 842, 871 |
| PflFI | GACNNNGTC | 1 cut(s) | 254 |
| PkrI | GCNGC | 2 cut(s) | 685, 766 |
| PleI | GAGTC | 2 cut(s) | 274, 972 |
| PpsI | GAGTC | 2 cut(s) | 274, 972 |
| PscI | ACATGT | 2 cut(s) | 73, 865 |
| Psp6I | CCWGG | 2 cut(s) | 986, 1025 |
| PspGI | CCWGG | 2 cut(s) | 986, 1025 |
| PspN4I | GGNNCC | 4 cut(s) | 107, 693, 763, 832 |
| PspPI | GGNCC | 1 cut(s) | 106 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 939, 971 |
| PstI | CTGCAG | 1 cut(s) | 685 |
| PsuI | RGATCY | 3 cut(s) | 641, 691, 830 |
| PsyI | GACNNNGTC | 1 cut(s) | 254 |
| RsaI | GTAC | 6 cut(s) | 68, 88, 522, 997, 1053, 1157 |
| RsaNI | GTAC | 6 cut(s) | 67, 87, 521, 996, 1052, 1156 |
| RseI | CAYNNNNRTG | 2 cut(s) | 78, 591 |
| SaqAI | TTAA | 8 cut(s) | 62, 180, 245, 455, 603, 702, 755, 983 |
| SatI | GCNGC | 2 cut(s) | 684, 765 |
| Sau3AI | GATC | 5 cut(s) | 139, 570, 641, 691, 830 |
| Sau96I | GGNCC | 1 cut(s) | 106 |
| ScaI | AGTACT | 1 cut(s) | 997 |
| SchI | GAGTC | 2 cut(s) | 274, 973 |
| ScrFI | CCNGG | 2 cut(s) | 988, 1027 |
| SexAI | ACCWGGT | 1 cut(s) | 986 |
| SfaNI | GCATC | 3 cut(s) | 309, 349, 1131 |
| SfcI | CTRYAG | 2 cut(s) | 9, 681 |
| SfuI | TTCGAA | 1 cut(s) | 54 |
| SinI | GGWCC | 1 cut(s) | 106 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 78, 591 |
| SmlI | CTYRAG | 3 cut(s) | 530, 754, 1007 |
| SmoI | CTYRAG | 3 cut(s) | 530, 754, 1007 |
| SphI | GCATGC | 1 cut(s) | 625 |
| Sse9I | AATT | 8 cut(s) | 25, 145, 230, 275, 470, 719, 877, 1115 |
| SsiI | CCGC | 2 cut(s) | 765, 811 |
| SspMI | CTAG | 3 cut(s) | 480, 696, 852 |
| StyD4I | CCNGG | 2 cut(s) | 986, 1025 |
| StyI | CCWWGG | 1 cut(s) | 959 |
| TaaI | ACNGT | 3 cut(s) | 86, 256, 340 |
| TaiI | ACGT | 1 cut(s) | 522 |
| TaqI | TCGA | 2 cut(s) | 54, 303 |
| TasI | AATT | 8 cut(s) | 25, 145, 230, 275, 470, 719, 877, 1115 |
| TatI | WGTACW | 2 cut(s) | 995, 1155 |
| TauI | GCSGC | 1 cut(s) | 767 |
| TfiI | GAWTC | 3 cut(s) | 750, 842, 871 |
| Tru1I | TTAA | 8 cut(s) | 62, 180, 245, 455, 603, 702, 755, 983 |
| Tru9I | TTAA | 8 cut(s) | 62, 180, 245, 455, 603, 702, 755, 983 |
| TscAI | CASTG | 3 cut(s) | 349, 693, 844 |
| TseFI | GTSAC | 2 cut(s) | 80, 248 |
| TseI | GCWGC | 1 cut(s) | 683 |
| Tsp45I | GTSAC | 2 cut(s) | 80, 248 |
| TspDTI | ATGAA | 9 cut(s) | 219, 625, 652, 722, 834, 898, 1062, 1092, 1125 |
| TspRI | CASTG | 3 cut(s) | 349, 693, 844 |
| Tth111I | GACNNNGTC | 1 cut(s) | 254 |
| Vha464I | CTTAAG | 1 cut(s) | 754 |
| VpaK11BI | GGWCC | 1 cut(s) | 106 |
| XapI | RAATTY | 4 cut(s) | 25, 230, 719, 877 |
| XceI | RCATGY | 3 cut(s) | 77, 625, 869 |
| XmiI | GTMKAC | 1 cut(s) | 578 |
| XmnI | GAANNNNTTC | 1 cut(s) | 632 |
| XspI | CTAG | 3 cut(s) | 480, 696, 852 |
| ZrmI | AGTACT | 1 cut(s) | 997 |
| Zsp2I | ATGCAT | 1 cut(s) | 364 |