BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1562 |
| Acc65I | GGTACC | 1 cut(s) | 1785 |
| AccB1I | GGYRCC | 1 cut(s) | 1785 |
| AccI | GTMKAC | 3 cut(s) | 106, 1158, 1302 |
| AciI | CCGC | 2 cut(s) | 17, 370 |
| AclWI | GGATC | 3 cut(s) | 139, 267, 1427 |
| AcsI | RAATTY | 8 cut(s) | 253, 682, 1007, 1273, 1376, 1503, 1658, 1824 |
| AcyI | GRCGYC | 1 cut(s) | 602 |
| AdeI | CACNNNGTG | 1 cut(s) | 941 |
| AfaI | GTAC | 6 cut(s) | 139, 616, 623, 885, 1118, 1787 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 589, 1619 |
| AflIII | ACRYGT | 1 cut(s) | 552 |
| AgeI | ACCGGT | 1 cut(s) | 1453 |
| AgsI | TTSAA | 9 cut(s) | 1012, 1103, 1258, 1363, 1382, 1444, 1551, 1861, 1899 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 838 |
| AjnI | CCWGG | 3 cut(s) | 568, 1495, 1612 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 539, 571 |
| Alw21I | GWGCWC | 3 cut(s) | 1495, 1881, 1936 |
| Alw26I | GTCTC | 3 cut(s) | 825, 921, 1266 |
| Alw44I | GTGCAC | 1 cut(s) | 1932 |
| AlwI | GGATC | 3 cut(s) | 139, 267, 1427 |
| AoxI | GGCC | 1 cut(s) | 1498 |
| ApaLI | GTGCAC | 1 cut(s) | 1932 |
| ApeKI | GCWGC | 4 cut(s) | 218, 853, 893, 1309 |
| ApoI | RAATTY | 8 cut(s) | 253, 682, 1007, 1273, 1376, 1503, 1658, 1824 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 139, 171 |
| AseI | ATTAAT | 1 cut(s) | 906 |
| AsiGI | ACCGGT | 1 cut(s) | 1453 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 62 |
| Asp718I | GGTACC | 1 cut(s) | 1785 |
| AspA2I | CCTAGG | 1 cut(s) | 1781 |
| AsuHPI | GGTGA | 5 cut(s) | 31, 95, 556, 1016, 1049 |
| AvrII | CCTAGG | 1 cut(s) | 1781 |
| BaeGI | GKGCMC | 2 cut(s) | 1172, 1936 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1769, 1802 |
| BanI | GGYRCC | 1 cut(s) | 1785 |
| BbsI | GAAGAC | 1 cut(s) | 720 |
| Bbv12I | GWGCWC | 3 cut(s) | 1495, 1881, 1936 |
| BbvI | GCAGC | 4 cut(s) | 230, 840, 905, 1321 |
| BccI | CCATC | 5 cut(s) | 605, 860, 1679, 1798, 1922 |
| BciT130I | CCWGG | 3 cut(s) | 570, 1497, 1614 |
| BciVI | GTATCC | 1 cut(s) | 1938 |
| BclI | TGATCA | 2 cut(s) | 361, 1570 |
| BcoDI | GTCTC | 3 cut(s) | 825, 921, 1266 |
| BfaI | CTAG | 5 cut(s) | 36, 1061, 1209, 1782, 1958 |
| BfmI | CTRYAG | 1 cut(s) | 464 |
| BfuAI | ACCTGC | 1 cut(s) | 1562 |
| BfuI | GTATCC | 1 cut(s) | 1938 |
| BglII | AGATCT | 2 cut(s) | 188, 519 |
| BisI | GCNGC | 4 cut(s) | 219, 854, 894, 1310 |
| BlnI | CCTAGG | 1 cut(s) | 1781 |
| BlpI | GCTNAGC | 1 cut(s) | 1558 |
| BlsI | GCNGC | 4 cut(s) | 220, 855, 895, 1311 |
| BmcAI | AGTACT | 1 cut(s) | 623 |
| Bme1390I | CCNGG | 3 cut(s) | 570, 1497, 1614 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 838 |
| BmiI | GGNNCC | 2 cut(s) | 1722, 1787 |
| BmrFI | CCNGG | 3 cut(s) | 570, 1497, 1614 |
| BmsI | GCATC | 2 cut(s) | 4, 913 |
| BpiI | GAAGAC | 1 cut(s) | 720 |
| BpmI | CTGGAG | 1 cut(s) | 1479 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1287 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1558 |
| BpuEI | CTTGAG | 2 cut(s) | 1426, 1651 |
| BsaBI | GATNNNNATC | 1 cut(s) | 43 |
| BsaHI | GRCGYC | 1 cut(s) | 602 |
| BsaJI | CCNNGG | 1 cut(s) | 1781 |
| BsaWI | WCCGGW | 1 cut(s) | 1453 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1860, 1890 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 589, 1619 |
| Bse118I | RCCGGY | 1 cut(s) | 1453 |
| Bse1I | ACTGG | 3 cut(s) | 141, 1651, 1946 |
| Bse3DI | GCAATG | 3 cut(s) | 1070, 1082, 1819 |
| Bse8I | GATNNNNATC | 1 cut(s) | 43 |
| BseBI | CCWGG | 3 cut(s) | 570, 1497, 1614 |
| BseDI | CCNNGG | 1 cut(s) | 1781 |
| BseGI | GGATG | 5 cut(s) | 283, 616, 928, 1398, 1914 |
| BseJI | GATNNNNATC | 1 cut(s) | 43 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 589, 1619 |
| BseMI | GCAATG | 3 cut(s) | 1070, 1082, 1819 |
| BseMII | CTCAG | 5 cut(s) | 139, 609, 932, 1278, 1668 |
| BseNI | ACTGG | 3 cut(s) | 141, 1651, 1946 |
| BseRI | GAGGAG | 1 cut(s) | 1733 |
| BseSI | GKGCMC | 2 cut(s) | 1172, 1936 |
| BseXI | GCAGC | 4 cut(s) | 230, 840, 905, 1321 |
| BseYI | CCCAGC | 1 cut(s) | 1906 |
| BsgI | GTGCAG | 1 cut(s) | 912 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1885 |
| BshFI | GGCC | 1 cut(s) | 1500 |
| BshNI | GGYRCC | 1 cut(s) | 1785 |
| BshTI | ACCGGT | 1 cut(s) | 1453 |
| BsiEI | CGRYCG | 1 cut(s) | 1885 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1495, 1881, 1936 |
| BsiSI | CCGG | 1 cut(s) | 1454 |
| BslFI | GGGAC | 5 cut(s) | 160, 826, 1136, 1640, 1702 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 589, 1619 |
| BsmAI | GTCTC | 3 cut(s) | 825, 921, 1266 |
| BsmFI | GGGAC | 5 cut(s) | 160, 826, 1136, 1640, 1702 |
| BsmI | GAATGC | 2 cut(s) | 721, 1336 |
| BsnI | GGCC | 1 cut(s) | 1500 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1172, 1495, 1881, 1936 |
| Bsp143I | GATC | 9 cut(s) | 131, 188, 259, 361, 382, 519, 576, 1432, 1570 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1558 |
| BspACI | CCGC | 2 cut(s) | 17, 370 |
| BspANI | GGCC | 1 cut(s) | 1500 |
| BspCNI | CTCAG | 5 cut(s) | 138, 610, 931, 1279, 1669 |
| BspLI | GGNNCC | 2 cut(s) | 1722, 1787 |
| BspMI | ACCTGC | 1 cut(s) | 1562 |
| BspPI | GGATC | 3 cut(s) | 139, 267, 1427 |
| BspT107I | GGYRCC | 1 cut(s) | 1785 |
| BsrDI | GCAATG | 3 cut(s) | 1070, 1082, 1819 |
| BsrFI | RCCGGY | 1 cut(s) | 1453 |
| BsrI | ACTGG | 3 cut(s) | 141, 1651, 1946 |
| BssAI | RCCGGY | 1 cut(s) | 1453 |
| BssECI | CCNNGG | 1 cut(s) | 1781 |
| BssMI | GATC | 9 cut(s) | 131, 188, 259, 361, 382, 519, 576, 1432, 1570 |
| BssNAI | GTATAC | 1 cut(s) | 1303 |
| BssNI | GRCGYC | 1 cut(s) | 602 |
| BssT1I | CCWWGG | 1 cut(s) | 1781 |
| Bst1107I | GTATAC | 1 cut(s) | 1303 |
| Bst2UI | CCWGG | 3 cut(s) | 570, 1497, 1614 |
| Bst4CI | ACNGT | 4 cut(s) | 512, 589, 767, 1886 |
| Bst6I | CTCTTC | 1 cut(s) | 1867 |
| BstACI | GRCGYC | 1 cut(s) | 602 |
| BstC8I | GCNNGC | 2 cut(s) | 1610, 1810 |
| BstDEI | CTNAG | 6 cut(s) | 125, 618, 918, 1287, 1558, 1677 |
| BstEII | GGTNACC | 1 cut(s) | 1234 |
| BstF5I | GGATG | 5 cut(s) | 283, 616, 928, 1398, 1914 |
| BstKTI | GATC | 9 cut(s) | 134, 191, 262, 364, 385, 522, 579, 1435, 1573 |
| BstMAI | GTCTC | 3 cut(s) | 825, 921, 1266 |
| BstMBI | GATC | 9 cut(s) | 131, 188, 259, 361, 382, 519, 576, 1432, 1570 |
| BstMCI | CGRYCG | 1 cut(s) | 1885 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 932 |
| BstNI | CCWGG | 3 cut(s) | 570, 1497, 1614 |
| BstNSI | RCATGY | 2 cut(s) | 437, 556 |
| BstPI | GGTNACC | 1 cut(s) | 1234 |
| BstSCI | CCNGG | 3 cut(s) | 568, 1495, 1612 |
| BstSFI | CTRYAG | 1 cut(s) | 464 |
| BstSLI | GKGCMC | 2 cut(s) | 1172, 1936 |
| BstV1I | GCAGC | 4 cut(s) | 230, 840, 905, 1321 |
| BstV2I | GAAGAC | 1 cut(s) | 720 |
| BstX2I | RGATCY | 3 cut(s) | 188, 519, 1432 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1077, 1481 |
| BstYI | RGATCY | 3 cut(s) | 188, 519, 1432 |
| BstZ17I | GTATAC | 1 cut(s) | 1303 |
| BsuI | GTATCC | 1 cut(s) | 1938 |
| BsuRI | GGCC | 1 cut(s) | 1500 |
| BtsCI | GGATG | 5 cut(s) | 283, 616, 928, 1398, 1914 |
| BtsI | GCAGTG | 1 cut(s) | 1492 |
| BtsIMutI | CAGTG | 3 cut(s) | 133, 148, 1492 |
| BveI | ACCTGC | 1 cut(s) | 1562 |
| Cac8I | GCNNGC | 2 cut(s) | 1610, 1810 |
| Cfr10I | RCCGGY | 1 cut(s) | 1453 |
| CseI | GACGC | 2 cut(s) | 591, 1133 |
| Csp6I | GTAC | 6 cut(s) | 138, 615, 622, 884, 1117, 1786 |
| CspAI | ACCGGT | 1 cut(s) | 1453 |
| CviAII | CATG | 9 cut(s) | 407, 434, 553, 736, 781, 1165, 1426, 1667, 1775 |
| CviQI | GTAC | 6 cut(s) | 138, 615, 622, 884, 1117, 1786 |
| DdeI | CTNAG | 6 cut(s) | 125, 618, 918, 1287, 1558, 1677 |
| DpnI | GATC | 9 cut(s) | 133, 190, 261, 363, 384, 521, 578, 1434, 1572 |
| DpnII | GATC | 9 cut(s) | 131, 188, 259, 361, 382, 519, 576, 1432, 1570 |
| DraI | TTTAAA | 2 cut(s) | 252, 681 |
| DraIII | CACNNNGTG | 1 cut(s) | 941 |
| DriI | GACNNNNNGTC | 1 cut(s) | 838 |
| Eam1104I | CTCTTC | 1 cut(s) | 1867 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 838 |
| EarI | CTCTTC | 1 cut(s) | 1867 |
| EciI | GGCGGA | 1 cut(s) | 385 |
| Eco130I | CCWWGG | 1 cut(s) | 1781 |
| Eco91I | GGTNACC | 1 cut(s) | 1234 |
| EcoO65I | GGTNACC | 1 cut(s) | 1234 |
| EcoRI | GAATTC | 1 cut(s) | 1824 |
| EcoRII | CCWGG | 3 cut(s) | 568, 1495, 1612 |
| EcoT14I | CCWWGG | 1 cut(s) | 1781 |
| ErhI | CCWWGG | 1 cut(s) | 1781 |
| FaeI | CATG | 9 cut(s) | 410, 437, 556, 739, 784, 1168, 1429, 1670, 1778 |
| FaqI | GGGAC | 5 cut(s) | 160, 826, 1136, 1640, 1702 |
| FatI | CATG | 9 cut(s) | 406, 433, 552, 735, 780, 1164, 1425, 1666, 1774 |
| FauNDI | CATATG | 1 cut(s) | 1090 |
| FbaI | TGATCA | 2 cut(s) | 361, 1570 |
| FblI | GTMKAC | 3 cut(s) | 106, 1158, 1302 |
| Fnu4HI | GCNGC | 4 cut(s) | 219, 854, 894, 1310 |
| FokI | GGATG | 5 cut(s) | 290, 623, 935, 1405, 1901 |
| Fsp4HI | GCNGC | 4 cut(s) | 219, 854, 894, 1310 |
| FspBI | CTAG | 5 cut(s) | 36, 1061, 1209, 1782, 1958 |
| GluI | GCNGC | 4 cut(s) | 219, 854, 894, 1310 |
| GsaI | CCCAGC | 1 cut(s) | 1910 |
| GsuI | CTGGAG | 1 cut(s) | 1479 |
| HaeIII | GGCC | 1 cut(s) | 1500 |
| HapII | CCGG | 1 cut(s) | 1454 |
| HgaI | GACGC | 2 cut(s) | 591, 1133 |
| Hin1I | GRCGYC | 1 cut(s) | 602 |
| Hin1II | CATG | 9 cut(s) | 410, 437, 556, 739, 784, 1168, 1429, 1670, 1778 |
| HindIII | AAGCTT | 1 cut(s) | 282 |
| HpaII | CCGG | 1 cut(s) | 1454 |
| HphI | GGTGA | 5 cut(s) | 31, 95, 556, 1016, 1049 |
| Hpy166II | GTNNAC | 8 cut(s) | 107, 989, 1024, 1159, 1198, 1303, 1934, 1955 |
| Hpy188I | TCNGA | 9 cut(s) | 13, 305, 446, 493, 727, 830, 1177, 1510, 1699 |
| Hpy188III | TCNNGA | 6 cut(s) | 263, 920, 929, 1286, 1444, 1620 |
| Hpy8I | GTNNAC | 8 cut(s) | 107, 989, 1024, 1159, 1198, 1303, 1934, 1955 |
| HpyAV | CCTTC | 3 cut(s) | 233, 268, 1617 |
| HpyCH4III | ACNGT | 4 cut(s) | 512, 589, 767, 1886 |
| HpyCH4IV | ACGT | 1 cut(s) | 1856 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 932 |
| HpyF3I | CTNAG | 6 cut(s) | 125, 618, 918, 1287, 1558, 1677 |
| HpySE526I | ACGT | 1 cut(s) | 1856 |
| Hsp92I | GRCGYC | 1 cut(s) | 602 |
| Hsp92II | CATG | 9 cut(s) | 410, 437, 556, 739, 784, 1168, 1429, 1670, 1778 |
| KpnI | GGTACC | 1 cut(s) | 1789 |
| Ksp22I | TGATCA | 2 cut(s) | 361, 1570 |
| Kzo9I | GATC | 9 cut(s) | 131, 188, 259, 361, 382, 519, 576, 1432, 1570 |
| LmnI | GCTCC | 2 cut(s) | 1498, 1720 |
| Lsp1109I | GCAGC | 4 cut(s) | 230, 840, 905, 1321 |
| LweI | GCATC | 2 cut(s) | 4, 913 |
| MaeI | CTAG | 5 cut(s) | 36, 1061, 1209, 1782, 1958 |
| MaeII | ACGT | 1 cut(s) | 1856 |
| MaeIII | GTNAC | 4 cut(s) | 83, 353, 484, 1234 |
| MalI | GATC | 9 cut(s) | 133, 190, 261, 363, 384, 521, 578, 1434, 1572 |
| MboI | GATC | 9 cut(s) | 131, 188, 259, 361, 382, 519, 576, 1432, 1570 |
| MboII | GAAGA | 8 cut(s) | 198, 283, 685, 693, 725, 1375, 1394, 1884 |
| MflI | RGATCY | 3 cut(s) | 188, 519, 1432 |
| MhlI | GDGCHC | 4 cut(s) | 1172, 1495, 1881, 1936 |
| MlyI | GAGTC | 2 cut(s) | 662, 1844 |
| MmeI | TCCRAC | 4 cut(s) | 418, 1012, 1289, 1677 |
| MroXI | GAANNNNTTC | 1 cut(s) | 62 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1075, 1927 |
| MspA1I | CMGCKG | 1 cut(s) | 1312 |
| MspI | CCGG | 1 cut(s) | 1454 |
| MspR9I | CCNGG | 3 cut(s) | 570, 1497, 1614 |
| Mva1269I | GAATGC | 2 cut(s) | 721, 1336 |
| MvaI | CCWGG | 3 cut(s) | 570, 1497, 1614 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 932 |
| NdeI | CATATG | 1 cut(s) | 1090 |
| NdeII | GATC | 9 cut(s) | 131, 188, 259, 361, 382, 519, 576, 1432, 1570 |
| NlaIII | CATG | 9 cut(s) | 410, 437, 556, 739, 784, 1168, 1429, 1670, 1778 |
| NlaIV | GGNNCC | 2 cut(s) | 1722, 1787 |
| NmuCI | GTSAC | 2 cut(s) | 83, 484 |
| NspI | RCATGY | 2 cut(s) | 437, 556 |
| PciI | ACATGT | 1 cut(s) | 552 |
| PctI | GAATGC | 2 cut(s) | 721, 1336 |
| PdmI | GAANNNNTTC | 1 cut(s) | 62 |
| PfeI | GAWTC | 8 cut(s) | 163, 441, 698, 740, 825, 958, 1254, 1440 |
| PflFI | GACNNNGTC | 2 cut(s) | 1154, 1693 |
| PinAI | ACCGGT | 1 cut(s) | 1453 |
| PkrI | GCNGC | 4 cut(s) | 220, 855, 895, 1311 |
| PleI | GAGTC | 2 cut(s) | 661, 1844 |
| PpsI | GAGTC | 2 cut(s) | 661, 1844 |
| PscI | ACATGT | 1 cut(s) | 552 |
| PshBI | ATTAAT | 1 cut(s) | 906 |
| Psp6I | CCWGG | 3 cut(s) | 568, 1495, 1612 |
| PspEI | GGTNACC | 1 cut(s) | 1234 |
| PspFI | CCCAGC | 1 cut(s) | 1906 |
| PspGI | CCWGG | 3 cut(s) | 568, 1495, 1612 |
| PspN4I | GGNNCC | 2 cut(s) | 1722, 1787 |
| PsuI | RGATCY | 3 cut(s) | 188, 519, 1432 |
| PsyI | GACNNNGTC | 2 cut(s) | 1154, 1693 |
| PvuII | CAGCTG | 1 cut(s) | 1312 |
| RsaI | GTAC | 6 cut(s) | 139, 616, 623, 885, 1118, 1787 |
| RsaNI | GTAC | 6 cut(s) | 138, 615, 622, 884, 1117, 1786 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1075, 1927 |
| SatI | GCNGC | 4 cut(s) | 219, 854, 894, 1310 |
| Sau3AI | GATC | 9 cut(s) | 131, 188, 259, 361, 382, 519, 576, 1432, 1570 |
| ScaI | AGTACT | 1 cut(s) | 623 |
| SchI | GAGTC | 2 cut(s) | 662, 1844 |
| ScrFI | CCNGG | 3 cut(s) | 570, 1497, 1614 |
| SduI | GDGCHC | 4 cut(s) | 1172, 1495, 1881, 1936 |
| SfaNI | GCATC | 2 cut(s) | 4, 913 |
| SfcI | CTRYAG | 1 cut(s) | 464 |
| SmiI | ATTTAAAT | 1 cut(s) | 252 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1075, 1927 |
| SmlI | CTYRAG | 2 cut(s) | 1405, 1630 |
| SmoI | CTYRAG | 2 cut(s) | 1405, 1630 |
| SsiI | CCGC | 2 cut(s) | 17, 370 |
| SspI | AATATT | 1 cut(s) | 1388 |
| SspMI | CTAG | 5 cut(s) | 36, 1061, 1209, 1782, 1958 |
| StyD4I | CCNGG | 3 cut(s) | 568, 1495, 1612 |
| StyI | CCWWGG | 1 cut(s) | 1781 |
| SwaI | ATTTAAAT | 1 cut(s) | 252 |
| TaaI | ACNGT | 4 cut(s) | 512, 589, 767, 1886 |
| TaiI | ACGT | 1 cut(s) | 1859 |
| TaqI | TCGA | 6 cut(s) | 66, 961, 1016, 1182, 1438, 1881 |
| TatI | WGTACW | 2 cut(s) | 621, 1116 |
| TfiI | GAWTC | 8 cut(s) | 163, 441, 698, 740, 825, 958, 1254, 1440 |
| TscAI | CASTG | 3 cut(s) | 133, 148, 1492 |
| TseFI | GTSAC | 2 cut(s) | 83, 484 |
| TseI | GCWGC | 4 cut(s) | 218, 853, 893, 1309 |
| Tsp45I | GTSAC | 2 cut(s) | 83, 484 |
| TspDTI | ATGAA | 6 cut(s) | 294, 1463, 1557, 1683, 1763, 1916 |
| TspRI | CASTG | 3 cut(s) | 133, 148, 1492 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1154, 1693 |
| VneI | GTGCAC | 1 cut(s) | 1932 |
| VspI | ATTAAT | 1 cut(s) | 906 |
| XapI | RAATTY | 8 cut(s) | 253, 682, 1007, 1273, 1376, 1503, 1658, 1824 |
| XceI | RCATGY | 2 cut(s) | 437, 556 |
| XmaJI | CCTAGG | 1 cut(s) | 1781 |
| XmiI | GTMKAC | 3 cut(s) | 106, 1158, 1302 |
| XmnI | GAANNNNTTC | 1 cut(s) | 62 |
| XspI | CTAG | 5 cut(s) | 36, 1061, 1209, 1782, 1958 |
| ZrmI | AGTACT | 1 cut(s) | 623 |