Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 139 - 239 | 4.7e-13 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 71, 299 |
| AccII | CGCG | 1 cut(s) | 601 |
| AciI | CCGC | 2 cut(s) | 86, 599 |
| AclWI | GGATC | 4 cut(s) | 96, 590, 836, 857 |
| AcsI | RAATTY | 2 cut(s) | 199, 233 |
| AfaI | GTAC | 1 cut(s) | 439 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 114, 323, 715, 872 |
| AgsI | TTSAA | 9 cut(s) | 143, 232, 296, 403, 562, 756, 790, 872, 901 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 736, 768 |
| AluBI | AGCT | 5 cut(s) | 227, 245, 549, 674, 824 |
| AluI | AGCT | 5 cut(s) | 227, 245, 549, 674, 824 |
| Alw26I | GTCTC | 2 cut(s) | 373, 473 |
| AlwI | GGATC | 4 cut(s) | 96, 590, 836, 857 |
| AoxI | GGCC | 1 cut(s) | 326 |
| ApoI | RAATTY | 2 cut(s) | 199, 233 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 62 |
| AspS9I | GGNCC | 1 cut(s) | 326 |
| AsuHPI | GGTGA | 5 cut(s) | 100, 320, 458, 504, 893 |
| BanI | GGYRCC | 2 cut(s) | 71, 299 |
| BbsI | GAAGAC | 1 cut(s) | 891 |
| BccI | CCATC | 3 cut(s) | 35, 641, 872 |
| BclI | TGATCA | 1 cut(s) | 565 |
| BcoDI | GTCTC | 2 cut(s) | 373, 473 |
| BfaI | CTAG | 3 cut(s) | 155, 192, 750 |
| BmcAI | AGTACT | 1 cut(s) | 439 |
| BmgT120I | GGNCC | 1 cut(s) | 326 |
| BmiI | GGNNCC | 2 cut(s) | 73, 301 |
| BmsI | GCATC | 2 cut(s) | 259, 518 |
| BpiI | GAAGAC | 1 cut(s) | 891 |
| BpuEI | CTTGAG | 3 cut(s) | 397, 518, 632 |
| BsaBI | GATNNNNATC | 2 cut(s) | 570, 852 |
| BsaI | GGTCTC | 2 cut(s) | 373, 473 |
| BsaJI | CCNNGG | 1 cut(s) | 303 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 114, 323, 715, 872 |
| Bse118I | RCCGGY | 1 cut(s) | 331 |
| Bse3DI | GCAATG | 1 cut(s) | 822 |
| Bse8I | GATNNNNATC | 2 cut(s) | 570, 852 |
| BseDI | CCNNGG | 1 cut(s) | 303 |
| BseJI | GATNNNNATC | 2 cut(s) | 570, 852 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 114, 323, 715, 872 |
| BseMI | GCAATG | 1 cut(s) | 822 |
| BseMII | CTCAG | 1 cut(s) | 492 |
| BseYI | CCCAGC | 1 cut(s) | 824 |
| Bsh1236I | CGCG | 1 cut(s) | 601 |
| BshFI | GGCC | 1 cut(s) | 328 |
| BshNI | GGYRCC | 2 cut(s) | 71, 299 |
| BsiSI | CCGG | 1 cut(s) | 332 |
| BslFI | GGGAC | 2 cut(s) | 170, 757 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 114, 323, 715, 872 |
| BsmAI | GTCTC | 2 cut(s) | 373, 473 |
| BsmFI | GGGAC | 2 cut(s) | 170, 757 |
| BsmI | GAATGC | 1 cut(s) | 88 |
| BsnI | GGCC | 1 cut(s) | 328 |
| Bso31I | GGTCTC | 2 cut(s) | 373, 473 |
| Bsp143I | GATC | 5 cut(s) | 101, 565, 595, 828, 862 |
| BspACI | CCGC | 2 cut(s) | 86, 599 |
| BspANI | GGCC | 1 cut(s) | 328 |
| BspCNI | CTCAG | 1 cut(s) | 493 |
| BspFNI | CGCG | 1 cut(s) | 601 |
| BspLI | GGNNCC | 2 cut(s) | 73, 301 |
| BspPI | GGATC | 4 cut(s) | 96, 590, 836, 857 |
| BspQI | GCTCTTC | 1 cut(s) | 805 |
| BspT107I | GGYRCC | 2 cut(s) | 71, 299 |
| BspTNI | GGTCTC | 2 cut(s) | 373, 473 |
| BsrDI | GCAATG | 1 cut(s) | 822 |
| BsrFI | RCCGGY | 1 cut(s) | 331 |
| BssAI | RCCGGY | 1 cut(s) | 331 |
| BssECI | CCNNGG | 1 cut(s) | 303 |
| BssMI | GATC | 5 cut(s) | 101, 565, 595, 828, 862 |
| BssT1I | CCWWGG | 1 cut(s) | 303 |
| Bst4CI | ACNGT | 1 cut(s) | 688 |
| Bst6I | CTCTTC | 1 cut(s) | 805 |
| BstC8I | GCNNGC | 1 cut(s) | 274 |
| BstDEI | CTNAG | 2 cut(s) | 98, 501 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 713, 870 |
| BstFNI | CGCG | 1 cut(s) | 601 |
| BstKTI | GATC | 5 cut(s) | 104, 568, 598, 831, 865 |
| BstMAI | GTCTC | 2 cut(s) | 373, 473 |
| BstMBI | GATC | 5 cut(s) | 101, 565, 595, 828, 862 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 821 |
| BstUI | CGCG | 1 cut(s) | 601 |
| BstV2I | GAAGAC | 1 cut(s) | 891 |
| BstX2I | RGATCY | 2 cut(s) | 101, 862 |
| BstYI | RGATCY | 2 cut(s) | 101, 862 |
| BsuRI | GGCC | 1 cut(s) | 328 |
| Cac8I | GCNNGC | 1 cut(s) | 274 |
| Cfr10I | RCCGGY | 1 cut(s) | 331 |
| Cfr13I | GGNCC | 1 cut(s) | 326 |
| CseI | GACGC | 1 cut(s) | 590 |
| Csp6I | GTAC | 1 cut(s) | 438 |
| CviAII | CATG | 2 cut(s) | 288, 492 |
| CviQI | GTAC | 1 cut(s) | 438 |
| DdeI | CTNAG | 2 cut(s) | 98, 501 |
| DpnI | GATC | 5 cut(s) | 103, 567, 597, 830, 864 |
| DpnII | GATC | 5 cut(s) | 101, 565, 595, 828, 862 |
| Eam1104I | CTCTTC | 1 cut(s) | 805 |
| EarI | CTCTTC | 1 cut(s) | 805 |
| Eco130I | CCWWGG | 1 cut(s) | 303 |
| Eco31I | GGTCTC | 2 cut(s) | 373, 473 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 713, 870 |
| EcoRI | GAATTC | 1 cut(s) | 199 |
| EcoT14I | CCWWGG | 1 cut(s) | 303 |
| ErhI | CCWWGG | 1 cut(s) | 303 |
| FaeI | CATG | 2 cut(s) | 291, 495 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 683, 715 |
| FaqI | GGGAC | 2 cut(s) | 170, 757 |
| FatI | CATG | 2 cut(s) | 287, 491 |
| FbaI | TGATCA | 1 cut(s) | 565 |
| FspBI | CTAG | 3 cut(s) | 155, 192, 750 |
| GsaI | CCCAGC | 1 cut(s) | 828 |
| HaeIII | GGCC | 1 cut(s) | 328 |
| HapII | CCGG | 1 cut(s) | 332 |
| HgaI | GACGC | 1 cut(s) | 590 |
| Hin1II | CATG | 2 cut(s) | 291, 495 |
| HincII | GTYRAC | 1 cut(s) | 625 |
| HindII | GTYRAC | 1 cut(s) | 625 |
| HindIII | AAGCTT | 1 cut(s) | 243 |
| HinfI | GANTC | 1 cut(s) | 637 |
| HpaII | CCGG | 1 cut(s) | 332 |
| HphI | GGTGA | 5 cut(s) | 100, 320, 458, 504, 893 |
| Hpy166II | GTNNAC | 2 cut(s) | 625, 835 |
| Hpy188I | TCNGA | 3 cut(s) | 24, 81, 502 |
| Hpy188III | TCNNGA | 4 cut(s) | 211, 376, 593, 641 |
| Hpy8I | GTNNAC | 2 cut(s) | 625, 835 |
| HpyAV | CCTTC | 7 cut(s) | 290, 317, 397, 725, 729, 734, 866 |
| HpyCH4III | ACNGT | 1 cut(s) | 688 |
| HpyCH4V | TGCA | 6 cut(s) | 162, 276, 287, 475, 509, 520 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 821 |
| HpyF3I | CTNAG | 2 cut(s) | 98, 501 |
| Hsp92II | CATG | 2 cut(s) | 291, 495 |
| Ksp22I | TGATCA | 1 cut(s) | 565 |
| Kzo9I | GATC | 5 cut(s) | 101, 565, 595, 828, 862 |
| LguI | GCTCTTC | 1 cut(s) | 805 |
| LmnI | GCTCC | 1 cut(s) | 358 |
| LpnPI | CCDG | 2 cut(s) | 345, 810 |
| LweI | GCATC | 2 cut(s) | 259, 518 |
| MaeI | CTAG | 3 cut(s) | 155, 192, 750 |
| MalI | GATC | 5 cut(s) | 103, 567, 597, 830, 864 |
| MboI | GATC | 5 cut(s) | 101, 565, 595, 828, 862 |
| MboII | GAAGA | 6 cut(s) | 70, 275, 278, 740, 822, 896 |
| MflI | RGATCY | 2 cut(s) | 101, 862 |
| MluCI | AATT | 6 cut(s) | 199, 233, 277, 362, 418, 901 |
| MmeI | TCCRAC | 1 cut(s) | 198 |
| MnlI | CCTC | 3 cut(s) | 84, 115, 718 |
| MroXI | GAANNNNTTC | 1 cut(s) | 62 |
| MseI | TTAA | 1 cut(s) | 129 |
| MspI | CCGG | 1 cut(s) | 332 |
| Mva1269I | GAATGC | 1 cut(s) | 88 |
| MvnI | CGCG | 1 cut(s) | 601 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 821 |
| NdeII | GATC | 5 cut(s) | 101, 565, 595, 828, 862 |
| NlaIII | CATG | 2 cut(s) | 291, 495 |
| NlaIV | GGNNCC | 2 cut(s) | 73, 301 |
| PciSI | GCTCTTC | 1 cut(s) | 805 |
| PctI | GAATGC | 1 cut(s) | 88 |
| PdmI | GAANNNNTTC | 1 cut(s) | 62 |
| PfeI | GAWTC | 1 cut(s) | 637 |
| PspFI | CCCAGC | 1 cut(s) | 824 |
| PspN4I | GGNNCC | 2 cut(s) | 73, 301 |
| PspPI | GGNCC | 1 cut(s) | 326 |
| PsuI | RGATCY | 2 cut(s) | 101, 862 |
| RsaI | GTAC | 1 cut(s) | 439 |
| RsaNI | GTAC | 1 cut(s) | 438 |
| SapI | GCTCTTC | 1 cut(s) | 805 |
| SaqAI | TTAA | 1 cut(s) | 129 |
| Sau3AI | GATC | 5 cut(s) | 101, 565, 595, 828, 862 |
| Sau96I | GGNCC | 1 cut(s) | 326 |
| ScaI | AGTACT | 1 cut(s) | 439 |
| SfaNI | GCATC | 2 cut(s) | 259, 518 |
| SmlI | CTYRAG | 3 cut(s) | 376, 533, 611 |
| SmoI | CTYRAG | 3 cut(s) | 376, 533, 611 |
| Sse9I | AATT | 6 cut(s) | 199, 233, 277, 362, 418, 901 |
| SsiI | CCGC | 2 cut(s) | 86, 599 |
| SspMI | CTAG | 3 cut(s) | 155, 192, 750 |
| StyI | CCWWGG | 1 cut(s) | 303 |
| TaaI | ACNGT | 1 cut(s) | 688 |
| TasI | AATT | 6 cut(s) | 199, 233, 277, 362, 418, 901 |
| TatI | WGTACW | 1 cut(s) | 437 |
| TfiI | GAWTC | 1 cut(s) | 637 |
| Tru1I | TTAA | 1 cut(s) | 129 |
| Tru9I | TTAA | 1 cut(s) | 129 |
| TspDTI | ATGAA | 7 cut(s) | 55, 71, 405, 422, 671, 675, 833 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 713, 870 |
| XapI | RAATTY | 2 cut(s) | 199, 233 |
| XmnI | GAANNNNTTC | 1 cut(s) | 62 |
| XspI | CTAG | 3 cut(s) | 155, 192, 750 |
| ZrmI | AGTACT | 1 cut(s) | 439 |