Zinc finger BED domain-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| hAT-like_RNase-H | PF14372 | 273 - 377 | 1.6e-13 | hAT-like transposase, RNase-H fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 258, 400 |
| AclWI | GGATC | 5 cut(s) | 885, 975, 988, 1022, 1035 |
| AcoI | YGGCCR | 1 cut(s) | 317 |
| AcsI | RAATTY | 2 cut(s) | 201, 553 |
| AcuI | CTGAAG | 2 cut(s) | 252, 281 |
| AfaI | GTAC | 3 cut(s) | 293, 1037, 1073 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1081 |
| AflII | CTTAAG | 1 cut(s) | 26 |
| AgsI | TTSAA | 8 cut(s) | 209, 592, 740, 781, 806, 967, 1045, 1120 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 50, 81 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 266, 298 |
| AluBI | AGCT | 6 cut(s) | 368, 581, 599, 686, 1003, 1126 |
| AluI | AGCT | 6 cut(s) | 368, 581, 599, 686, 1003, 1126 |
| Alw21I | GWGCWC | 3 cut(s) | 156, 817, 1134 |
| Alw26I | GTCTC | 1 cut(s) | 14 |
| Alw44I | GTGCAC | 1 cut(s) | 813 |
| AlwI | GGATC | 5 cut(s) | 885, 975, 988, 1022, 1035 |
| AoxI | GGCC | 2 cut(s) | 317, 728 |
| ApaI | GGGCCC | 1 cut(s) | 732 |
| ApaLI | GTGCAC | 1 cut(s) | 813 |
| ApeKI | GCWGC | 4 cut(s) | 701, 758, 1013, 1123 |
| ApoI | RAATTY | 2 cut(s) | 201, 553 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 623, 655 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 785, 962 |
| AspS9I | GGNCC | 3 cut(s) | 75, 728, 729 |
| AsuHPI | GGTGA | 1 cut(s) | 872 |
| AvaII | GGWCC | 1 cut(s) | 75 |
| BaeGI | GKGCMC | 2 cut(s) | 732, 817 |
| BalI | TGGCCA | 1 cut(s) | 319 |
| BamHI | GGATCC | 2 cut(s) | 980, 1027 |
| BanII | GRGCYC | 1 cut(s) | 732 |
| BbsI | GAAGAC | 2 cut(s) | 835, 996 |
| Bbv12I | GWGCWC | 3 cut(s) | 156, 817, 1134 |
| BbvI | GCAGC | 4 cut(s) | 713, 770, 1000, 1135 |
| BccI | CCATC | 3 cut(s) | 309, 332, 715 |
| BcoDI | GTCTC | 1 cut(s) | 14 |
| BfaI | CTAG | 2 cut(s) | 396, 714 |
| BfrI | CTTAAG | 1 cut(s) | 26 |
| BisI | GCNGC | 4 cut(s) | 702, 759, 1014, 1124 |
| BlpI | GCTNAGC | 1 cut(s) | 364 |
| BlsI | GCNGC | 4 cut(s) | 703, 760, 1015, 1125 |
| Bme18I | GGWCC | 1 cut(s) | 75 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 50, 81 |
| BmgT120I | GGNCC | 3 cut(s) | 75, 728, 729 |
| BmiI | GGNNCC | 4 cut(s) | 730, 731, 982, 1029 |
| BmsI | GCATC | 2 cut(s) | 350, 616 |
| BpiI | GAAGAC | 2 cut(s) | 835, 996 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 364 |
| BpuEI | CTTGAG | 1 cut(s) | 806 |
| BsaJI | CCNNGG | 3 cut(s) | 320, 1031, 1080 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1081 |
| Bse1I | ACTGG | 1 cut(s) | 230 |
| BseDI | CCNNGG | 3 cut(s) | 320, 1031, 1080 |
| BseGI | GGATG | 2 cut(s) | 320, 631 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1081 |
| BseMII | CTCAG | 2 cut(s) | 906, 1101 |
| BseNI | ACTGG | 1 cut(s) | 230 |
| BseRI | GAGGAG | 1 cut(s) | 469 |
| BseSI | GKGCMC | 2 cut(s) | 732, 817 |
| BseXI | GCAGC | 4 cut(s) | 713, 770, 1000, 1135 |
| BsgI | GTGCAG | 1 cut(s) | 999 |
| Bsh1285I | CGRYCG | 1 cut(s) | 258 |
| BshFI | GGCC | 2 cut(s) | 319, 730 |
| BsiEI | CGRYCG | 1 cut(s) | 258 |
| BsiHKAI | GWGCWC | 3 cut(s) | 156, 817, 1134 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1081 |
| BsmAI | GTCTC | 1 cut(s) | 14 |
| BsnI | GGCC | 2 cut(s) | 319, 730 |
| Bsp120I | GGGCCC | 1 cut(s) | 728 |
| Bsp1286I | GDGCHC | 4 cut(s) | 156, 732, 817, 1134 |
| Bsp143I | GATC | 3 cut(s) | 877, 980, 1027 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 364 |
| Bsp19I | CCATGG | 1 cut(s) | 1080 |
| BspANI | GGCC | 2 cut(s) | 319, 730 |
| BspCNI | CTCAG | 2 cut(s) | 907, 1100 |
| BspLI | GGNNCC | 4 cut(s) | 730, 731, 982, 1029 |
| BspPI | GGATC | 5 cut(s) | 885, 975, 988, 1022, 1035 |
| BspTI | CTTAAG | 1 cut(s) | 26 |
| BsrI | ACTGG | 1 cut(s) | 230 |
| BssECI | CCNNGG | 3 cut(s) | 320, 1031, 1080 |
| BssMI | GATC | 3 cut(s) | 877, 980, 1027 |
| BssT1I | CCWWGG | 3 cut(s) | 320, 1031, 1080 |
| Bst4CI | ACNGT | 1 cut(s) | 802 |
| Bst6I | CTCTTC | 2 cut(s) | 648, 864 |
| BstAFI | CTTAAG | 1 cut(s) | 26 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1129 |
| BstC8I | GCNNGC | 1 cut(s) | 427 |
| BstDEI | CTNAG | 4 cut(s) | 232, 364, 915, 1087 |
| BstDSI | CCRYGG | 1 cut(s) | 1080 |
| BstF5I | GGATG | 2 cut(s) | 320, 631 |
| BstKTI | GATC | 3 cut(s) | 880, 983, 1030 |
| BstMAI | GTCTC | 1 cut(s) | 14 |
| BstMBI | GATC | 3 cut(s) | 877, 980, 1027 |
| BstMCI | CGRYCG | 1 cut(s) | 258 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1129 |
| BstNSI | RCATGY | 1 cut(s) | 356 |
| BstSLI | GKGCMC | 2 cut(s) | 732, 817 |
| BstV1I | GCAGC | 4 cut(s) | 713, 770, 1000, 1135 |
| BstV2I | GAAGAC | 2 cut(s) | 835, 996 |
| BstX2I | RGATCY | 2 cut(s) | 980, 1027 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 549 |
| BstYI | RGATCY | 2 cut(s) | 980, 1027 |
| BsuRI | GGCC | 2 cut(s) | 319, 730 |
| BtgI | CCRYGG | 1 cut(s) | 1080 |
| BtsCI | GGATG | 2 cut(s) | 320, 631 |
| BtsI | GCAGTG | 1 cut(s) | 108 |
| BtsIMutI | CAGTG | 3 cut(s) | 108, 276, 426 |
| Cac8I | GCNNGC | 1 cut(s) | 427 |
| Cfr13I | GGNCC | 3 cut(s) | 75, 728, 729 |
| Csp6I | GTAC | 3 cut(s) | 292, 1036, 1072 |
| CviAII | CATG | 6 cut(s) | 72, 81, 353, 568, 848, 1081 |
| CviQI | GTAC | 3 cut(s) | 292, 1036, 1072 |
| DdeI | CTNAG | 4 cut(s) | 232, 364, 915, 1087 |
| DpnI | GATC | 3 cut(s) | 879, 982, 1029 |
| DpnII | GATC | 3 cut(s) | 877, 980, 1027 |
| DriI | GACNNNNNGTC | 2 cut(s) | 50, 81 |
| EaeI | YGGCCR | 1 cut(s) | 317 |
| Eam1104I | CTCTTC | 2 cut(s) | 648, 864 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 50, 81 |
| EarI | CTCTTC | 2 cut(s) | 648, 864 |
| Eco130I | CCWWGG | 3 cut(s) | 320, 1031, 1080 |
| Eco24I | GRGCYC | 1 cut(s) | 732 |
| Eco47I | GGWCC | 1 cut(s) | 75 |
| Eco57I | CTGAAG | 2 cut(s) | 252, 281 |
| EcoO109I | RGGNCCY | 2 cut(s) | 728, 729 |
| EcoRI | GAATTC | 1 cut(s) | 553 |
| EcoT14I | CCWWGG | 3 cut(s) | 320, 1031, 1080 |
| EcoT22I | ATGCAT | 1 cut(s) | 354 |
| EcoT38I | GRGCYC | 1 cut(s) | 732 |
| ErhI | CCWWGG | 3 cut(s) | 320, 1031, 1080 |
| FaeI | CATG | 6 cut(s) | 75, 84, 356, 571, 851, 1084 |
| FatI | CATG | 6 cut(s) | 71, 80, 352, 567, 847, 1080 |
| FblI | GTMKAC | 2 cut(s) | 258, 400 |
| Fnu4HI | GCNGC | 4 cut(s) | 702, 759, 1014, 1124 |
| FokI | GGATG | 2 cut(s) | 327, 638 |
| FriOI | GRGCYC | 1 cut(s) | 732 |
| Fsp4HI | GCNGC | 4 cut(s) | 702, 759, 1014, 1124 |
| FspBI | CTAG | 2 cut(s) | 396, 714 |
| GluI | GCNGC | 4 cut(s) | 702, 759, 1014, 1124 |
| HaeIII | GGCC | 2 cut(s) | 319, 730 |
| Hin1II | CATG | 6 cut(s) | 75, 84, 356, 571, 851, 1084 |
| HincII | GTYRAC | 1 cut(s) | 259 |
| HindII | GTYRAC | 1 cut(s) | 259 |
| HindIII | AAGCTT | 1 cut(s) | 597 |
| HinfI | GANTC | 4 cut(s) | 125, 740, 917, 1085 |
| HphI | GGTGA | 1 cut(s) | 872 |
| Hpy166II | GTNNAC | 5 cut(s) | 259, 274, 379, 401, 815 |
| Hpy188I | TCNGA | 3 cut(s) | 300, 922, 1111 |
| Hpy188III | TCNNGA | 1 cut(s) | 206 |
| Hpy8I | GTNNAC | 5 cut(s) | 259, 274, 379, 401, 815 |
| HpyAV | CCTTC | 2 cut(s) | 305, 571 |
| HpyCH4III | ACNGT | 1 cut(s) | 802 |
| HpyCH4V | TGCA | 6 cut(s) | 11, 142, 352, 629, 815, 1016 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1129 |
| HpyF3I | CTNAG | 4 cut(s) | 232, 364, 915, 1087 |
| Hsp92II | CATG | 6 cut(s) | 75, 84, 356, 571, 851, 1084 |
| Kzo9I | GATC | 3 cut(s) | 877, 980, 1027 |
| LpnPI | CCDG | 5 cut(s) | 114, 168, 211, 447, 896 |
| Lsp1109I | GCAGC | 4 cut(s) | 713, 770, 1000, 1135 |
| LweI | GCATC | 2 cut(s) | 350, 616 |
| MaeI | CTAG | 2 cut(s) | 396, 714 |
| MaeIII | GTNAC | 4 cut(s) | 106, 796, 856, 1142 |
| MalI | GATC | 3 cut(s) | 879, 982, 1029 |
| MboI | GATC | 3 cut(s) | 877, 980, 1027 |
| MboII | GAAGA | 9 cut(s) | 604, 665, 683, 730, 835, 881, 1001, 1057, 1114 |
| MfeI | CAATTG | 1 cut(s) | 745 |
| MflI | RGATCY | 2 cut(s) | 980, 1027 |
| MhlI | GDGCHC | 4 cut(s) | 156, 732, 817, 1134 |
| MlsI | TGGCCA | 1 cut(s) | 319 |
| MluCI | AATT | 8 cut(s) | 94, 157, 201, 553, 587, 745, 861, 1115 |
| MluNI | TGGCCA | 1 cut(s) | 319 |
| MlyI | GAGTC | 3 cut(s) | 119, 926, 1079 |
| MmeI | TCCRAC | 2 cut(s) | 552, 855 |
| MnlI | CCTC | 7 cut(s) | 35, 88, 384, 447, 616, 649, 948 |
| Mox20I | TGGCCA | 1 cut(s) | 319 |
| Mph1103I | ATGCAT | 1 cut(s) | 354 |
| MroXI | GAANNNNTTC | 2 cut(s) | 785, 962 |
| MscI | TGGCCA | 1 cut(s) | 319 |
| MseI | TTAA | 7 cut(s) | 27, 222, 678, 696, 1053, 1098, 1150 |
| MslI | CAYNNNNRTG | 1 cut(s) | 386 |
| Msp20I | TGGCCA | 1 cut(s) | 319 |
| MspCI | CTTAAG | 1 cut(s) | 26 |
| MunI | CAATTG | 1 cut(s) | 745 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1129 |
| NcoI | CCATGG | 1 cut(s) | 1080 |
| NdeII | GATC | 3 cut(s) | 877, 980, 1027 |
| NlaIII | CATG | 6 cut(s) | 75, 84, 356, 571, 851, 1084 |
| NlaIV | GGNNCC | 4 cut(s) | 730, 731, 982, 1029 |
| NmuCI | GTSAC | 3 cut(s) | 106, 796, 1142 |
| NsiI | ATGCAT | 1 cut(s) | 354 |
| NspI | RCATGY | 1 cut(s) | 356 |
| PdmI | GAANNNNTTC | 2 cut(s) | 785, 962 |
| PfeI | GAWTC | 1 cut(s) | 740 |
| PkrI | GCNGC | 4 cut(s) | 703, 760, 1015, 1125 |
| PleI | GAGTC | 3 cut(s) | 119, 925, 1079 |
| PpsI | GAGTC | 3 cut(s) | 119, 925, 1079 |
| PspN4I | GGNNCC | 4 cut(s) | 730, 731, 982, 1029 |
| PspOMI | GGGCCC | 1 cut(s) | 728 |
| PspPI | GGNCC | 3 cut(s) | 75, 728, 729 |
| PsuI | RGATCY | 2 cut(s) | 980, 1027 |
| RsaI | GTAC | 3 cut(s) | 293, 1037, 1073 |
| RsaNI | GTAC | 3 cut(s) | 292, 1036, 1072 |
| RseI | CAYNNNNRTG | 1 cut(s) | 386 |
| SalI | GTCGAC | 1 cut(s) | 257 |
| SaqAI | TTAA | 7 cut(s) | 27, 222, 678, 696, 1053, 1098, 1150 |
| SatI | GCNGC | 4 cut(s) | 702, 759, 1014, 1124 |
| Sau3AI | GATC | 3 cut(s) | 877, 980, 1027 |
| Sau96I | GGNCC | 3 cut(s) | 75, 728, 729 |
| SchI | GAGTC | 3 cut(s) | 119, 926, 1079 |
| SduI | GDGCHC | 4 cut(s) | 156, 732, 817, 1134 |
| SfaNI | GCATC | 2 cut(s) | 350, 616 |
| SinI | GGWCC | 1 cut(s) | 75 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 386 |
| SmlI | CTYRAG | 2 cut(s) | 26, 821 |
| SmoI | CTYRAG | 2 cut(s) | 26, 821 |
| Sse9I | AATT | 8 cut(s) | 94, 157, 201, 553, 587, 745, 861, 1115 |
| SspI | AATATT | 1 cut(s) | 694 |
| SspMI | CTAG | 2 cut(s) | 396, 714 |
| StyI | CCWWGG | 3 cut(s) | 320, 1031, 1080 |
| TaaI | ACNGT | 1 cut(s) | 802 |
| TaqI | TCGA | 2 cut(s) | 258, 445 |
| TaqII | GACCGA | 1 cut(s) | 244 |
| TasI | AATT | 8 cut(s) | 94, 157, 201, 553, 587, 745, 861, 1115 |
| TfiI | GAWTC | 1 cut(s) | 740 |
| Tru1I | TTAA | 7 cut(s) | 27, 222, 678, 696, 1053, 1098, 1150 |
| Tru9I | TTAA | 7 cut(s) | 27, 222, 678, 696, 1053, 1098, 1150 |
| TscAI | CASTG | 3 cut(s) | 115, 276, 426 |
| TseFI | GTSAC | 3 cut(s) | 106, 796, 1142 |
| TseI | GCWGC | 4 cut(s) | 701, 758, 1013, 1123 |
| Tsp45I | GTSAC | 3 cut(s) | 106, 796, 1142 |
| TspDTI | ATGAA | 6 cut(s) | 109, 553, 666, 684, 696, 1128 |
| TspRI | CASTG | 3 cut(s) | 115, 276, 426 |
| Vha464I | CTTAAG | 1 cut(s) | 26 |
| VneI | GTGCAC | 1 cut(s) | 813 |
| VpaK11BI | GGWCC | 1 cut(s) | 75 |
| XapI | RAATTY | 2 cut(s) | 201, 553 |
| XceI | RCATGY | 1 cut(s) | 356 |
| XmiI | GTMKAC | 2 cut(s) | 258, 400 |
| XmnI | GAANNNNTTC | 2 cut(s) | 785, 962 |
| XspI | CTAG | 2 cut(s) | 396, 714 |
| Zsp2I | ATGCAT | 1 cut(s) | 354 |