BED zinc finger
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 100 |
| AccIII | TCCGGA | 1 cut(s) | 369 |
| AciI | CCGC | 1 cut(s) | 134 |
| AcoI | YGGCCR | 1 cut(s) | 274 |
| AcsI | RAATTY | 3 cut(s) | 55, 212, 456 |
| AcuI | CTGAAG | 1 cut(s) | 432 |
| AfaI | GTAC | 1 cut(s) | 783 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 110, 250 |
| AgsI | TTSAA | 5 cut(s) | 95, 154, 446, 626, 811 |
| AjnI | CCWGG | 2 cut(s) | 16, 537 |
| AleI | CACNNNNGTG | 1 cut(s) | 270 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 455, 487 |
| AluBI | AGCT | 5 cut(s) | 145, 366, 568, 661, 722 |
| AluI | AGCT | 5 cut(s) | 145, 366, 568, 661, 722 |
| Alw21I | GWGCWC | 1 cut(s) | 724 |
| Aor13HI | TCCGGA | 1 cut(s) | 369 |
| AoxI | GGCC | 1 cut(s) | 274 |
| ApeKI | GCWGC | 2 cut(s) | 38, 727 |
| ApoI | RAATTY | 3 cut(s) | 55, 212, 456 |
| AseI | ATTAAT | 1 cut(s) | 768 |
| AsuHPI | GGTGA | 2 cut(s) | 428, 698 |
| AxyI | CCTNAGG | 1 cut(s) | 791 |
| BanII | GRGCYC | 1 cut(s) | 724 |
| Bbv12I | GWGCWC | 1 cut(s) | 724 |
| BbvI | GCAGC | 2 cut(s) | 25, 739 |
| BccI | CCATC | 2 cut(s) | 82, 224 |
| BceAI | ACGGC | 1 cut(s) | 261 |
| BciT130I | CCWGG | 2 cut(s) | 18, 539 |
| BciVI | GTATCC | 1 cut(s) | 277 |
| BclI | TGATCA | 1 cut(s) | 597 |
| BfaI | CTAG | 3 cut(s) | 6, 119, 483 |
| BfmI | CTRYAG | 2 cut(s) | 69, 725 |
| BfuI | GTATCC | 1 cut(s) | 277 |
| BisI | GCNGC | 2 cut(s) | 39, 728 |
| BlsI | GCNGC | 2 cut(s) | 40, 729 |
| Bme1390I | CCNGG | 2 cut(s) | 18, 539 |
| BmrFI | CCNGG | 2 cut(s) | 18, 539 |
| BmrI | ACTGGG | 1 cut(s) | 433 |
| BmsI | GCATC | 1 cut(s) | 607 |
| BmuI | ACTGGG | 1 cut(s) | 433 |
| BsaJI | CCNNGG | 1 cut(s) | 249 |
| BsaWI | WCCGGW | 1 cut(s) | 369 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 605, 635 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 110, 250 |
| Bse1I | ACTGG | 2 cut(s) | 344, 428 |
| Bse21I | CCTNAGG | 1 cut(s) | 791 |
| Bse3DI | GCAATG | 2 cut(s) | 612, 737 |
| BseAI | TCCGGA | 1 cut(s) | 369 |
| BseBI | CCWGG | 2 cut(s) | 18, 539 |
| BseDI | CCNNGG | 1 cut(s) | 249 |
| BseGI | GGATG | 3 cut(s) | 394, 534, 622 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 110, 250 |
| BseMI | GCAATG | 2 cut(s) | 612, 737 |
| BseMII | CTCAG | 3 cut(s) | 98, 160, 782 |
| BseNI | ACTGG | 2 cut(s) | 344, 428 |
| BseRI | GAGGAG | 1 cut(s) | 24 |
| BseXI | GCAGC | 2 cut(s) | 25, 739 |
| BsgI | GTGCAG | 1 cut(s) | 303 |
| BshFI | GGCC | 1 cut(s) | 276 |
| BsiHKAI | GWGCWC | 1 cut(s) | 724 |
| BsiSI | CCGG | 1 cut(s) | 370 |
| BslFI | GGGAC | 1 cut(s) | 605 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 110, 250 |
| BsmFI | GGGAC | 1 cut(s) | 605 |
| BsmI | GAATGC | 1 cut(s) | 176 |
| BsnI | GGCC | 1 cut(s) | 276 |
| Bsp1286I | GDGCHC | 1 cut(s) | 724 |
| Bsp13I | TCCGGA | 1 cut(s) | 369 |
| Bsp143I | GATC | 1 cut(s) | 597 |
| Bsp19I | CCATGG | 1 cut(s) | 249 |
| BspACI | CCGC | 1 cut(s) | 134 |
| BspANI | GGCC | 1 cut(s) | 276 |
| BspCNI | CTCAG | 3 cut(s) | 97, 159, 783 |
| BspEI | TCCGGA | 1 cut(s) | 369 |
| BspMAI | CTGCAG | 2 cut(s) | 73, 729 |
| BsrDI | GCAATG | 2 cut(s) | 612, 737 |
| BsrI | ACTGG | 2 cut(s) | 344, 428 |
| BssECI | CCNNGG | 1 cut(s) | 249 |
| BssMI | GATC | 1 cut(s) | 597 |
| BssT1I | CCWWGG | 1 cut(s) | 249 |
| Bst2UI | CCWGG | 2 cut(s) | 18, 539 |
| Bst6I | CTCTTC | 1 cut(s) | 757 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 59 |
| BstC8I | GCNNGC | 1 cut(s) | 64 |
| BstDEI | CTNAG | 5 cut(s) | 84, 146, 217, 362, 791 |
| BstDSI | CCRYGG | 1 cut(s) | 249 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 108 |
| BstF5I | GGATG | 3 cut(s) | 394, 534, 622 |
| BstKTI | GATC | 1 cut(s) | 600 |
| BstMBI | GATC | 1 cut(s) | 597 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 59, 68, 133, 142 |
| BstNI | CCWGG | 2 cut(s) | 18, 539 |
| BstSCI | CCNGG | 2 cut(s) | 16, 537 |
| BstSFI | CTRYAG | 2 cut(s) | 69, 725 |
| BstV1I | GCAGC | 2 cut(s) | 25, 739 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 560 |
| Bsu36I | CCTNAGG | 1 cut(s) | 791 |
| BsuI | GTATCC | 1 cut(s) | 277 |
| BsuRI | GGCC | 1 cut(s) | 276 |
| BtgI | CCRYGG | 1 cut(s) | 249 |
| BtgZI | GCGATG | 1 cut(s) | 516 |
| BtsCI | GGATG | 3 cut(s) | 394, 534, 622 |
| Cac8I | GCNNGC | 1 cut(s) | 64 |
| Csp6I | GTAC | 1 cut(s) | 782 |
| CviAII | CATG | 3 cut(s) | 175, 250, 595 |
| CviJI | RGCY | 9 cut(s) | 38, 114, 145, 243, 276, 366, 568, 661, 722 |
| CviKI_1 | RGCY | 9 cut(s) | 38, 114, 145, 243, 276, 366, 568, 661, 722 |
| CviQI | GTAC | 1 cut(s) | 782 |
| DdeI | CTNAG | 5 cut(s) | 84, 146, 217, 362, 791 |
| DpnI | GATC | 1 cut(s) | 599 |
| DpnII | GATC | 1 cut(s) | 597 |
| EaeI | YGGCCR | 1 cut(s) | 274 |
| Eam1104I | CTCTTC | 1 cut(s) | 757 |
| EarI | CTCTTC | 1 cut(s) | 757 |
| Ecl136II | GAGCTC | 1 cut(s) | 722 |
| Eco130I | CCWWGG | 1 cut(s) | 249 |
| Eco24I | GRGCYC | 1 cut(s) | 724 |
| Eco32I | GATATC | 2 cut(s) | 471, 640 |
| Eco53kI | GAGCTC | 1 cut(s) | 722 |
| Eco57I | CTGAAG | 1 cut(s) | 432 |
| Eco81I | CCTNAGG | 1 cut(s) | 791 |
| EcoICRI | GAGCTC | 1 cut(s) | 722 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 108 |
| EcoRI | GAATTC | 1 cut(s) | 456 |
| EcoRII | CCWGG | 2 cut(s) | 16, 537 |
| EcoRV | GATATC | 2 cut(s) | 471, 640 |
| EcoT14I | CCWWGG | 1 cut(s) | 249 |
| EcoT22I | ATGCAT | 1 cut(s) | 176 |
| EcoT38I | GRGCYC | 1 cut(s) | 724 |
| ErhI | CCWWGG | 1 cut(s) | 249 |
| FaeI | CATG | 3 cut(s) | 178, 253, 598 |
| FaiI | YATR | 8 cut(s) | 24, 176, 186, 251, 257, 310, 596, 740 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 200, 232 |
| FaqI | GGGAC | 1 cut(s) | 605 |
| FatI | CATG | 3 cut(s) | 174, 249, 594 |
| FbaI | TGATCA | 1 cut(s) | 597 |
| FblI | GTMKAC | 1 cut(s) | 100 |
| Fnu4HI | GCNGC | 2 cut(s) | 39, 728 |
| FokI | GGATG | 3 cut(s) | 401, 521, 629 |
| FriOI | GRGCYC | 1 cut(s) | 724 |
| Fsp4HI | GCNGC | 2 cut(s) | 39, 728 |
| FspBI | CTAG | 3 cut(s) | 6, 119, 483 |
| GluI | GCNGC | 2 cut(s) | 39, 728 |
| HaeIII | GGCC | 1 cut(s) | 276 |
| HapII | CCGG | 1 cut(s) | 370 |
| Hin1II | CATG | 3 cut(s) | 178, 253, 598 |
| HinfI | GANTC | 6 cut(s) | 122, 130, 373, 392, 506, 547 |
| HpaII | CCGG | 1 cut(s) | 370 |
| HphI | GGTGA | 2 cut(s) | 428, 698 |
| Hpy166II | GTNNAC | 2 cut(s) | 101, 223 |
| Hpy188I | TCNGA | 3 cut(s) | 87, 397, 462 |
| Hpy188III | TCNNGA | 5 cut(s) | 6, 119, 370, 410, 446 |
| Hpy8I | GTNNAC | 2 cut(s) | 101, 223 |
| HpyAV | CCTTC | 3 cut(s) | 89, 407, 805 |
| HpyCH4V | TGCA | 6 cut(s) | 53, 71, 174, 320, 580, 727 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 59, 68, 133, 142 |
| HpyF3I | CTNAG | 5 cut(s) | 84, 146, 217, 362, 791 |
| Hsp92II | CATG | 3 cut(s) | 178, 253, 598 |
| Kpn2I | TCCGGA | 1 cut(s) | 369 |
| Ksp22I | TGATCA | 1 cut(s) | 597 |
| Kzo9I | GATC | 1 cut(s) | 597 |
| LmnI | GCTCC | 1 cut(s) | 719 |
| Lsp1109I | GCAGC | 2 cut(s) | 25, 739 |
| LweI | GCATC | 1 cut(s) | 607 |
| MaeI | CTAG | 3 cut(s) | 6, 119, 483 |
| MaeIII | GTNAC | 1 cut(s) | 530 |
| MalI | GATC | 1 cut(s) | 599 |
| MboI | GATC | 1 cut(s) | 597 |
| MboII | GAAGA | 2 cut(s) | 744, 813 |
| MhlI | GDGCHC | 1 cut(s) | 724 |
| MluCI | AATT | 3 cut(s) | 55, 212, 456 |
| MlyI | GAGTC | 3 cut(s) | 131, 382, 401 |
| MmeI | TCCRAC | 1 cut(s) | 577 |
| MnlI | CCTC | 9 cut(s) | 36, 93, 104, 254, 255, 487, 607, 669, 786 |
| Mph1103I | ATGCAT | 1 cut(s) | 176 |
| MroI | TCCGGA | 1 cut(s) | 369 |
| MseI | TTAA | 5 cut(s) | 141, 435, 633, 768, 823 |
| MslI | CAYNNNNRTG | 2 cut(s) | 270, 585 |
| MspA1I | CMGCKG | 1 cut(s) | 661 |
| MspI | CCGG | 1 cut(s) | 370 |
| MspR9I | CCNGG | 2 cut(s) | 18, 539 |
| Mva1269I | GAATGC | 1 cut(s) | 176 |
| MvaI | CCWGG | 2 cut(s) | 18, 539 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 59, 68, 133, 142 |
| NcoI | CCATGG | 1 cut(s) | 249 |
| NdeII | GATC | 1 cut(s) | 597 |
| NlaIII | CATG | 3 cut(s) | 178, 253, 598 |
| NmuCI | GTSAC | 1 cut(s) | 530 |
| NsiI | ATGCAT | 1 cut(s) | 176 |
| OliI | CACNNNNGTG | 1 cut(s) | 270 |
| PctI | GAATGC | 1 cut(s) | 176 |
| PfeI | GAWTC | 3 cut(s) | 130, 506, 547 |
| PfoI | TCCNGGA | 1 cut(s) | 537 |
| PkrI | GCNGC | 2 cut(s) | 40, 729 |
| PleI | GAGTC | 3 cut(s) | 130, 381, 400 |
| PpsI | GAGTC | 3 cut(s) | 130, 381, 400 |
| PshBI | ATTAAT | 1 cut(s) | 768 |
| Psp124BI | GAGCTC | 1 cut(s) | 724 |
| Psp6I | CCWGG | 2 cut(s) | 16, 537 |
| PspGI | CCWGG | 2 cut(s) | 16, 537 |
| PstI | CTGCAG | 2 cut(s) | 73, 729 |
| PvuII | CAGCTG | 1 cut(s) | 661 |
| RsaI | GTAC | 1 cut(s) | 783 |
| RsaNI | GTAC | 1 cut(s) | 782 |
| RseI | CAYNNNNRTG | 2 cut(s) | 270, 585 |
| SacI | GAGCTC | 1 cut(s) | 724 |
| SaqAI | TTAA | 5 cut(s) | 141, 435, 633, 768, 823 |
| SatI | GCNGC | 2 cut(s) | 39, 728 |
| Sau3AI | GATC | 1 cut(s) | 597 |
| SchI | GAGTC | 3 cut(s) | 131, 382, 401 |
| ScrFI | CCNGG | 2 cut(s) | 18, 539 |
| SduI | GDGCHC | 1 cut(s) | 724 |
| SfaNI | GCATC | 1 cut(s) | 607 |
| SfcI | CTRYAG | 2 cut(s) | 69, 725 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 270, 585 |
| Sse9I | AATT | 3 cut(s) | 55, 212, 456 |
| SsiI | CCGC | 1 cut(s) | 134 |
| SspMI | CTAG | 3 cut(s) | 6, 119, 483 |
| SstI | GAGCTC | 1 cut(s) | 724 |
| StyD4I | CCNGG | 2 cut(s) | 16, 537 |
| StyI | CCWWGG | 1 cut(s) | 249 |
| TaqI | TCGA | 1 cut(s) | 228 |
| TasI | AATT | 3 cut(s) | 55, 212, 456 |
| TfiI | GAWTC | 3 cut(s) | 130, 506, 547 |
| Tru1I | TTAA | 5 cut(s) | 141, 435, 633, 768, 823 |
| Tru9I | TTAA | 5 cut(s) | 141, 435, 633, 768, 823 |
| TseFI | GTSAC | 1 cut(s) | 530 |
| TseI | GCWGC | 2 cut(s) | 38, 727 |
| Tsp45I | GTSAC | 1 cut(s) | 530 |
| TspDTI | ATGAA | 2 cut(s) | 191, 498 |
| TspGWI | ACGGA | 2 cut(s) | 250, 644 |
| VspI | ATTAAT | 1 cut(s) | 768 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 108 |
| XapI | RAATTY | 3 cut(s) | 55, 212, 456 |
| XbaI | TCTAGA | 2 cut(s) | 5, 118 |
| XmiI | GTMKAC | 1 cut(s) | 100 |
| XspI | CTAG | 3 cut(s) | 6, 119, 483 |
| Zsp2I | ATGCAT | 1 cut(s) | 176 |