Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 337 |
| Acc36I | ACCTGC | 1 cut(s) | 337 |
| AccII | CGCG | 1 cut(s) | 661 |
| AciI | CCGC | 3 cut(s) | 345, 390, 603 |
| AclWI | GGATC | 5 cut(s) | 117, 306, 325, 406, 690 |
| AcsI | RAATTY | 1 cut(s) | 490 |
| AfaI | GTAC | 2 cut(s) | 91, 132 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 554 |
| AgsI | TTSAA | 4 cut(s) | 149, 435, 530, 644 |
| AhlI | ACTAGT | 1 cut(s) | 455 |
| AjnI | CCWGG | 3 cut(s) | 53, 519, 652 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 442, 474 |
| AluBI | AGCT | 2 cut(s) | 122, 443 |
| AluI | AGCT | 2 cut(s) | 122, 443 |
| Alw26I | GTCTC | 1 cut(s) | 120 |
| AlwI | GGATC | 5 cut(s) | 117, 306, 325, 406, 690 |
| Ama87I | CYCGRG | 1 cut(s) | 184 |
| ApeKI | GCWGC | 1 cut(s) | 50 |
| ApoI | RAATTY | 1 cut(s) | 490 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 457 |
| AspS9I | GGNCC | 1 cut(s) | 205 |
| AsuHPI | GGTGA | 3 cut(s) | 278, 509, 569 |
| AvaI | CYCGRG | 1 cut(s) | 184 |
| AvaII | GGWCC | 1 cut(s) | 205 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 653, 686 |
| BanII | GRGCYC | 1 cut(s) | 185 |
| BbsI | GAAGAC | 1 cut(s) | 587 |
| BbvI | GCAGC | 1 cut(s) | 62 |
| BccI | CCATC | 3 cut(s) | 26, 587, 703 |
| BceAI | ACGGC | 2 cut(s) | 72, 149 |
| BciT130I | CCWGG | 3 cut(s) | 55, 521, 654 |
| BciVI | GTATCC | 1 cut(s) | 620 |
| BcoDI | GTCTC | 1 cut(s) | 120 |
| BcuI | ACTAGT | 1 cut(s) | 455 |
| BfaI | CTAG | 4 cut(s) | 93, 348, 423, 456 |
| BfuAI | ACCTGC | 1 cut(s) | 337 |
| BfuI | GTATCC | 1 cut(s) | 620 |
| BisI | GCNGC | 1 cut(s) | 51 |
| BlsI | GCNGC | 1 cut(s) | 52 |
| Bme1390I | CCNGG | 3 cut(s) | 55, 521, 654 |
| Bme18I | GGWCC | 1 cut(s) | 205 |
| BmeT110I | CYCGRG | 1 cut(s) | 184 |
| BmgT120I | GGNCC | 1 cut(s) | 205 |
| BmiI | GGNNCC | 2 cut(s) | 6, 651 |
| BmrFI | CCNGG | 3 cut(s) | 55, 521, 654 |
| BmsI | GCATC | 1 cut(s) | 28 |
| BpiI | GAAGAC | 1 cut(s) | 587 |
| BpmI | CTGGAG | 3 cut(s) | 102, 465, 698 |
| BsaJI | CCNNGG | 2 cut(s) | 27, 653 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 442, 472 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 554 |
| Bse118I | RCCGGY | 1 cut(s) | 15 |
| BseBI | CCWGG | 3 cut(s) | 55, 521, 654 |
| BseDI | CCNNGG | 2 cut(s) | 27, 653 |
| BseGI | GGATG | 4 cut(s) | 19, 37, 235, 695 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 554 |
| BseMII | CTCAG | 1 cut(s) | 453 |
| BseRI | GAGGAG | 1 cut(s) | 522 |
| BseXI | GCAGC | 1 cut(s) | 62 |
| BsgI | GTGCAG | 1 cut(s) | 309 |
| Bsh1236I | CGCG | 1 cut(s) | 661 |
| BsiHKCI | CYCGRG | 1 cut(s) | 184 |
| BsiSI | CCGG | 1 cut(s) | 16 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 554 |
| BsmAI | GTCTC | 1 cut(s) | 120 |
| BsoBI | CYCGRG | 1 cut(s) | 184 |
| Bsp1286I | GDGCHC | 1 cut(s) | 185 |
| Bsp143I | GATC | 8 cut(s) | 109, 251, 298, 317, 398, 514, 617, 682 |
| Bsp68I | TCGCGA | 1 cut(s) | 661 |
| BspACI | CCGC | 3 cut(s) | 345, 390, 603 |
| BspCNI | CTCAG | 1 cut(s) | 452 |
| BspFNI | CGCG | 1 cut(s) | 661 |
| BspLI | GGNNCC | 2 cut(s) | 6, 651 |
| BspMI | ACCTGC | 1 cut(s) | 337 |
| BspPI | GGATC | 5 cut(s) | 117, 306, 325, 406, 690 |
| BsrFI | RCCGGY | 1 cut(s) | 15 |
| BssAI | RCCGGY | 1 cut(s) | 15 |
| BssECI | CCNNGG | 2 cut(s) | 27, 653 |
| BssMI | GATC | 8 cut(s) | 109, 251, 298, 317, 398, 514, 617, 682 |
| Bst2UI | CCWGG | 3 cut(s) | 55, 521, 654 |
| Bst6I | CTCTTC | 2 cut(s) | 195, 692 |
| BstC8I | GCNNGC | 1 cut(s) | 712 |
| BstDEI | CTNAG | 2 cut(s) | 439, 665 |
| BstF5I | GGATG | 4 cut(s) | 19, 37, 235, 695 |
| BstFNI | CGCG | 1 cut(s) | 661 |
| BstKTI | GATC | 8 cut(s) | 112, 254, 301, 320, 401, 517, 620, 685 |
| BstMAI | GTCTC | 1 cut(s) | 120 |
| BstMBI | GATC | 8 cut(s) | 109, 251, 298, 317, 398, 514, 617, 682 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 84, 344, 716 |
| BstNI | CCWGG | 3 cut(s) | 55, 521, 654 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSCI | CCNGG | 3 cut(s) | 53, 519, 652 |
| BstUI | CGCG | 1 cut(s) | 661 |
| BstV1I | GCAGC | 1 cut(s) | 62 |
| BstV2I | GAAGAC | 1 cut(s) | 587 |
| BstX2I | RGATCY | 4 cut(s) | 109, 317, 398, 682 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 645 |
| BstYI | RGATCY | 4 cut(s) | 109, 317, 398, 682 |
| BsuI | GTATCC | 1 cut(s) | 620 |
| BtsCI | GGATG | 4 cut(s) | 19, 37, 235, 695 |
| BtuMI | TCGCGA | 1 cut(s) | 661 |
| BveI | ACCTGC | 1 cut(s) | 337 |
| Cac8I | GCNNGC | 1 cut(s) | 712 |
| Cfr10I | RCCGGY | 1 cut(s) | 15 |
| Cfr13I | GGNCC | 1 cut(s) | 205 |
| Csp6I | GTAC | 2 cut(s) | 90, 131 |
| CviAII | CATG | 9 cut(s) | 70, 236, 244, 293, 409, 475, 496, 554, 700 |
| CviJI | RGCY | 6 cut(s) | 53, 87, 122, 183, 259, 443 |
| CviKI_1 | RGCY | 6 cut(s) | 53, 87, 122, 183, 259, 443 |
| CviQI | GTAC | 2 cut(s) | 90, 131 |
| DdeI | CTNAG | 2 cut(s) | 439, 665 |
| DpnI | GATC | 8 cut(s) | 111, 253, 300, 319, 400, 516, 619, 684 |
| DpnII | GATC | 8 cut(s) | 109, 251, 298, 317, 398, 514, 617, 682 |
| Eam1104I | CTCTTC | 2 cut(s) | 195, 692 |
| EarI | CTCTTC | 2 cut(s) | 195, 692 |
| Eco24I | GRGCYC | 1 cut(s) | 185 |
| Eco47I | GGWCC | 1 cut(s) | 205 |
| Eco88I | CYCGRG | 1 cut(s) | 184 |
| EcoRII | CCWGG | 3 cut(s) | 53, 519, 652 |
| EcoT38I | GRGCYC | 1 cut(s) | 185 |
| FaeI | CATG | 9 cut(s) | 73, 239, 247, 296, 412, 478, 499, 557, 703 |
| FatI | CATG | 9 cut(s) | 69, 235, 243, 292, 408, 474, 495, 553, 699 |
| Fnu4HI | GCNGC | 1 cut(s) | 51 |
| FokI | GGATG | 4 cut(s) | 6, 44, 242, 682 |
| FriOI | GRGCYC | 1 cut(s) | 185 |
| Fsp4HI | GCNGC | 1 cut(s) | 51 |
| FspBI | CTAG | 4 cut(s) | 93, 348, 423, 456 |
| GluI | GCNGC | 1 cut(s) | 51 |
| GsuI | CTGGAG | 3 cut(s) | 102, 465, 698 |
| HapII | CCGG | 1 cut(s) | 16 |
| Hin1II | CATG | 9 cut(s) | 73, 239, 247, 296, 412, 478, 499, 557, 703 |
| HinfI | GANTC | 1 cut(s) | 101 |
| HpaII | CCGG | 1 cut(s) | 16 |
| HphI | GGTGA | 3 cut(s) | 278, 509, 569 |
| Hpy166II | GTNNAC | 2 cut(s) | 173, 222 |
| Hpy188I | TCNGA | 3 cut(s) | 106, 229, 592 |
| Hpy188III | TCNNGA | 6 cut(s) | 149, 170, 186, 608, 660, 677 |
| Hpy8I | GTNNAC | 2 cut(s) | 173, 222 |
| Hpy99I | CGWCG | 1 cut(s) | 719 |
| HpyAV | CCTTC | 1 cut(s) | 697 |
| HpyCH4IV | ACGT | 1 cut(s) | 154 |
| HpyCH4V | TGCA | 3 cut(s) | 247, 326, 553 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 84, 344, 716 |
| HpyF3I | CTNAG | 2 cut(s) | 439, 665 |
| HpySE526I | ACGT | 1 cut(s) | 154 |
| Hsp92II | CATG | 9 cut(s) | 73, 239, 247, 296, 412, 478, 499, 557, 703 |
| Kzo9I | GATC | 8 cut(s) | 109, 251, 298, 317, 398, 514, 617, 682 |
| Lsp1109I | GCAGC | 1 cut(s) | 62 |
| LweI | GCATC | 1 cut(s) | 28 |
| MaeI | CTAG | 4 cut(s) | 93, 348, 423, 456 |
| MaeII | ACGT | 1 cut(s) | 154 |
| MaeIII | GTNAC | 3 cut(s) | 41, 277, 605 |
| MalI | GATC | 8 cut(s) | 111, 253, 300, 319, 400, 516, 619, 684 |
| MboI | GATC | 8 cut(s) | 109, 251, 298, 317, 398, 514, 617, 682 |
| MfeI | CAATTG | 1 cut(s) | 283 |
| MflI | RGATCY | 4 cut(s) | 109, 317, 398, 682 |
| MhlI | GDGCHC | 1 cut(s) | 185 |
| MluCI | AATT | 2 cut(s) | 283, 490 |
| MmeI | TCCRAC | 1 cut(s) | 47 |
| MnlI | CCTC | 9 cut(s) | 22, 100, 196, 289, 440, 500, 553, 590, 673 |
| MroXI | GAANNNNTTC | 1 cut(s) | 457 |
| MseI | TTAA | 3 cut(s) | 309, 366, 727 |
| MslI | CAYNNNNRTG | 1 cut(s) | 643 |
| MspA1I | CMGCKG | 2 cut(s) | 122, 443 |
| MspI | CCGG | 1 cut(s) | 16 |
| MspR9I | CCNGG | 3 cut(s) | 55, 521, 654 |
| MunI | CAATTG | 1 cut(s) | 283 |
| MvaI | CCWGG | 3 cut(s) | 55, 521, 654 |
| MvnI | CGCG | 1 cut(s) | 661 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 84, 344, 716 |
| NdeII | GATC | 8 cut(s) | 109, 251, 298, 317, 398, 514, 617, 682 |
| NlaIII | CATG | 9 cut(s) | 73, 239, 247, 296, 412, 478, 499, 557, 703 |
| NlaIV | GGNNCC | 2 cut(s) | 6, 651 |
| NmuCI | GTSAC | 1 cut(s) | 605 |
| NruI | TCGCGA | 1 cut(s) | 661 |
| NspI | RCATGY | 1 cut(s) | 73 |
| PaqCI | CACCTGC | 1 cut(s) | 337 |
| PdmI | GAANNNNTTC | 1 cut(s) | 457 |
| PfeI | GAWTC | 1 cut(s) | 101 |
| PkrI | GCNGC | 1 cut(s) | 52 |
| Psp6I | CCWGG | 3 cut(s) | 53, 519, 652 |
| PspGI | CCWGG | 3 cut(s) | 53, 519, 652 |
| PspN4I | GGNNCC | 2 cut(s) | 6, 651 |
| PspPI | GGNCC | 1 cut(s) | 205 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 445, 477 |
| PsuI | RGATCY | 4 cut(s) | 109, 317, 398, 682 |
| PvuII | CAGCTG | 2 cut(s) | 122, 443 |
| RruI | TCGCGA | 1 cut(s) | 661 |
| RsaI | GTAC | 2 cut(s) | 91, 132 |
| RsaNI | GTAC | 2 cut(s) | 90, 131 |
| RseI | CAYNNNNRTG | 1 cut(s) | 643 |
| SaqAI | TTAA | 3 cut(s) | 309, 366, 727 |
| SatI | GCNGC | 1 cut(s) | 51 |
| Sau3AI | GATC | 8 cut(s) | 109, 251, 298, 317, 398, 514, 617, 682 |
| Sau96I | GGNCC | 1 cut(s) | 205 |
| ScrFI | CCNGG | 3 cut(s) | 55, 521, 654 |
| SduI | GDGCHC | 1 cut(s) | 185 |
| SetI | ASST | 7 cut(s) | 124, 157, 207, 331, 445, 601, 671 |
| SfaNI | GCATC | 1 cut(s) | 28 |
| SinI | GGWCC | 1 cut(s) | 205 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 643 |
| SpeI | ACTAGT | 1 cut(s) | 455 |
| Sse9I | AATT | 2 cut(s) | 283, 490 |
| SsiI | CCGC | 3 cut(s) | 345, 390, 603 |
| SspMI | CTAG | 4 cut(s) | 93, 348, 423, 456 |
| StyD4I | CCNGG | 3 cut(s) | 53, 519, 652 |
| TaiI | ACGT | 1 cut(s) | 157 |
| TaqI | TCGA | 1 cut(s) | 721 |
| TasI | AATT | 2 cut(s) | 283, 490 |
| TfiI | GAWTC | 1 cut(s) | 101 |
| Tru1I | TTAA | 3 cut(s) | 309, 366, 727 |
| Tru9I | TTAA | 3 cut(s) | 309, 366, 727 |
| TseFI | GTSAC | 1 cut(s) | 605 |
| TseI | GCWGC | 1 cut(s) | 50 |
| Tsp45I | GTSAC | 1 cut(s) | 605 |
| TspDTI | ATGAA | 6 cut(s) | 224, 419, 484, 491, 593, 716 |
| VpaK11BI | GGWCC | 1 cut(s) | 205 |
| XapI | RAATTY | 1 cut(s) | 490 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XmnI | GAANNNNTTC | 1 cut(s) | 457 |
| XspI | CTAG | 4 cut(s) | 93, 348, 423, 456 |