Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UQ_con | PF00179 | 21 - 147 | 1.3e-43 | Ubiquitin-conjugating enzyme |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 350 |
| AcsI | RAATTY | 2 cut(s) | 221, 416 |
| AcyI | GRCGYC | 1 cut(s) | 162 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 43, 232 |
| AgsI | TTSAA | 4 cut(s) | 101, 112, 400, 421 |
| AluBI | AGCT | 1 cut(s) | 184 |
| AluI | AGCT | 1 cut(s) | 184 |
| AlwI | GGATC | 1 cut(s) | 350 |
| AoxI | GGCC | 1 cut(s) | 134 |
| ApeKI | GCWGC | 1 cut(s) | 387 |
| ApoI | RAATTY | 2 cut(s) | 221, 416 |
| AspS9I | GGNCC | 3 cut(s) | 86, 134, 370 |
| AvaII | GGWCC | 2 cut(s) | 86, 370 |
| BbsI | GAAGAC | 3 cut(s) | 108, 157, 388 |
| BbvI | GCAGC | 1 cut(s) | 399 |
| BccI | CCATC | 3 cut(s) | 185, 221, 254 |
| BfaI | CTAG | 1 cut(s) | 456 |
| BfmI | CTRYAG | 1 cut(s) | 76 |
| BisI | GCNGC | 1 cut(s) | 388 |
| BlsI | GCNGC | 1 cut(s) | 389 |
| Bme18I | GGWCC | 2 cut(s) | 86, 370 |
| BmgT120I | GGNCC | 3 cut(s) | 86, 134, 370 |
| BmiI | GGNNCC | 3 cut(s) | 135, 302, 372 |
| BmrI | ACTGGG | 2 cut(s) | 299, 359 |
| BmuI | ACTGGG | 2 cut(s) | 299, 359 |
| BpiI | GAAGAC | 3 cut(s) | 108, 157, 388 |
| BpmI | CTGGAG | 1 cut(s) | 123 |
| Bsa29I | ATCGAT | 1 cut(s) | 252 |
| BsaHI | GRCGYC | 1 cut(s) | 162 |
| BsaJI | CCNNGG | 1 cut(s) | 231 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 193, 223 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 43, 232 |
| Bse1I | ACTGG | 4 cut(s) | 32, 89, 305, 365 |
| Bse3DI | GCAATG | 1 cut(s) | 397 |
| BseCI | ATCGAT | 1 cut(s) | 252 |
| BseDI | CCNNGG | 1 cut(s) | 231 |
| BseGI | GGATG | 1 cut(s) | 241 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 43, 232 |
| BseMI | GCAATG | 1 cut(s) | 397 |
| BseNI | ACTGG | 4 cut(s) | 32, 89, 305, 365 |
| BseXI | GCAGC | 1 cut(s) | 399 |
| BshFI | GGCC | 1 cut(s) | 136 |
| BshVI | ATCGAT | 1 cut(s) | 252 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 43, 232 |
| BsnI | GGCC | 1 cut(s) | 136 |
| Bsp143I | GATC | 3 cut(s) | 7, 292, 355 |
| BspANI | GGCC | 1 cut(s) | 136 |
| BspDI | ATCGAT | 1 cut(s) | 252 |
| BspLI | GGNNCC | 3 cut(s) | 135, 302, 372 |
| BspMAI | CTGCAG | 1 cut(s) | 80 |
| BspPI | GGATC | 1 cut(s) | 350 |
| BsrDI | GCAATG | 1 cut(s) | 397 |
| BsrI | ACTGG | 4 cut(s) | 32, 89, 305, 365 |
| BssECI | CCNNGG | 1 cut(s) | 231 |
| BssMI | GATC | 3 cut(s) | 7, 292, 355 |
| BssNI | GRCGYC | 1 cut(s) | 162 |
| BssT1I | CCWWGG | 1 cut(s) | 231 |
| BstACI | GRCGYC | 1 cut(s) | 162 |
| BstC8I | GCNNGC | 1 cut(s) | 22 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 230 |
| BstF5I | GGATG | 1 cut(s) | 241 |
| BstKTI | GATC | 3 cut(s) | 10, 295, 358 |
| BstMBI | GATC | 3 cut(s) | 7, 292, 355 |
| BstSFI | CTRYAG | 1 cut(s) | 76 |
| BstV1I | GCAGC | 1 cut(s) | 399 |
| BstV2I | GAAGAC | 3 cut(s) | 108, 157, 388 |
| Bsu15I | ATCGAT | 1 cut(s) | 252 |
| BsuRI | GGCC | 1 cut(s) | 136 |
| BsuTUI | ATCGAT | 1 cut(s) | 252 |
| BtsCI | GGATG | 1 cut(s) | 241 |
| BtsI | GCAGTG | 1 cut(s) | 73 |
| BtsIMutI | CAGTG | 3 cut(s) | 25, 73, 372 |
| Cac8I | GCNNGC | 1 cut(s) | 22 |
| Cfr13I | GGNCC | 3 cut(s) | 86, 134, 370 |
| ClaI | ATCGAT | 1 cut(s) | 252 |
| CseI | GACGC | 1 cut(s) | 151 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 348, 383 |
| CviJI | RGCY | 5 cut(s) | 24, 136, 184, 208, 324 |
| CviKI_1 | RGCY | 5 cut(s) | 24, 136, 184, 208, 324 |
| DpnI | GATC | 3 cut(s) | 9, 294, 357 |
| DpnII | GATC | 3 cut(s) | 7, 292, 355 |
| Eco130I | CCWWGG | 1 cut(s) | 231 |
| Eco47I | GGWCC | 2 cut(s) | 86, 370 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 230 |
| EcoO109I | RGGNCCY | 1 cut(s) | 134 |
| EcoRI | GAATTC | 1 cut(s) | 416 |
| EcoT14I | CCWWGG | 1 cut(s) | 231 |
| ErhI | CCWWGG | 1 cut(s) | 231 |
| FaiI | YATR | 9 cut(s) | 34, 53, 84, 131, 151, 153, 338, 340, 453 |
| FauNDI | CATATG | 2 cut(s) | 151, 338 |
| Fnu4HI | GCNGC | 1 cut(s) | 388 |
| FokI | GGATG | 1 cut(s) | 228 |
| Fsp4HI | GCNGC | 1 cut(s) | 388 |
| FspBI | CTAG | 1 cut(s) | 456 |
| GluI | GCNGC | 1 cut(s) | 388 |
| GsuI | CTGGAG | 1 cut(s) | 123 |
| HaeIII | GGCC | 1 cut(s) | 136 |
| HgaI | GACGC | 1 cut(s) | 151 |
| Hin1I | GRCGYC | 1 cut(s) | 162 |
| HinfI | GANTC | 3 cut(s) | 48, 143, 442 |
| Hpy166II | GTNNAC | 2 cut(s) | 94, 370 |
| Hpy188I | TCNGA | 1 cut(s) | 447 |
| Hpy188III | TCNNGA | 3 cut(s) | 11, 140, 310 |
| Hpy8I | GTNNAC | 2 cut(s) | 94, 370 |
| HpyAV | CCTTC | 1 cut(s) | 152 |
| HpyCH4V | TGCA | 2 cut(s) | 20, 78 |
| Hsp92I | GRCGYC | 1 cut(s) | 162 |
| Kzo9I | GATC | 3 cut(s) | 7, 292, 355 |
| LpnPI | CCDG | 8 cut(s) | 13, 102, 153, 201, 318, 323, 378, 398 |
| Lsp1109I | GCAGC | 1 cut(s) | 399 |
| MaeI | CTAG | 1 cut(s) | 456 |
| MalI | GATC | 3 cut(s) | 9, 294, 357 |
| MboI | GATC | 3 cut(s) | 7, 292, 355 |
| MboII | GAAGA | 7 cut(s) | 113, 157, 167, 269, 299, 302, 388 |
| MluCI | AATT | 2 cut(s) | 221, 416 |
| MlyI | GAGTC | 1 cut(s) | 436 |
| MmeI | TCCRAC | 1 cut(s) | 224 |
| MnlI | CCTC | 4 cut(s) | 37, 147, 219, 384 |
| MseI | TTAA | 1 cut(s) | 351 |
| NdeI | CATATG | 2 cut(s) | 151, 338 |
| NdeII | GATC | 3 cut(s) | 7, 292, 355 |
| NlaIV | GGNNCC | 3 cut(s) | 135, 302, 372 |
| PfeI | GAWTC | 2 cut(s) | 48, 143 |
| PkrI | GCNGC | 1 cut(s) | 389 |
| PleI | GAGTC | 1 cut(s) | 436 |
| PpsI | GAGTC | 1 cut(s) | 436 |
| PspN4I | GGNNCC | 3 cut(s) | 135, 302, 372 |
| PspPI | GGNCC | 3 cut(s) | 86, 134, 370 |
| PstI | CTGCAG | 1 cut(s) | 80 |
| SaqAI | TTAA | 1 cut(s) | 351 |
| SatI | GCNGC | 1 cut(s) | 388 |
| Sau3AI | GATC | 3 cut(s) | 7, 292, 355 |
| Sau96I | GGNCC | 3 cut(s) | 86, 134, 370 |
| SchI | GAGTC | 1 cut(s) | 436 |
| SetI | ASST | 5 cut(s) | 99, 124, 186, 190, 237 |
| SfcI | CTRYAG | 1 cut(s) | 76 |
| SinI | GGWCC | 2 cut(s) | 86, 370 |
| Sse9I | AATT | 2 cut(s) | 221, 416 |
| SspI | AATATT | 1 cut(s) | 268 |
| SspMI | CTAG | 1 cut(s) | 456 |
| StyI | CCWWGG | 1 cut(s) | 231 |
| TaqI | TCGA | 3 cut(s) | 10, 180, 252 |
| TasI | AATT | 2 cut(s) | 221, 416 |
| TfiI | GAWTC | 2 cut(s) | 48, 143 |
| Tru1I | TTAA | 1 cut(s) | 351 |
| Tru9I | TTAA | 1 cut(s) | 351 |
| TscAI | CASTG | 3 cut(s) | 32, 80, 372 |
| TseI | GCWGC | 1 cut(s) | 387 |
| TspDTI | ATGAA | 3 cut(s) | 40, 168, 270 |
| TspRI | CASTG | 3 cut(s) | 32, 80, 372 |
| VpaK11BI | GGWCC | 2 cut(s) | 86, 370 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 230 |
| XapI | RAATTY | 2 cut(s) | 221, 416 |
| XspI | CTAG | 1 cut(s) | 456 |