Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Reverse (-)

7402462 .. 7403005

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAACCACAAAACCGGCATCCAATCGAGGATGGAGGAAGCAACAAAGCAGCCGAGAGTAGTCCTAACATGCATTGCAAGCAAAGTAAAACCAAGTGGCTTCCTACTACAGATCAGATAAGAATCCTCAAGGAGCTTTACTATGACAAAGGAGTTAAGTCCCCCACTGTAGAGCAGATCGAGAACAAGAACGTCTTTTATTGGTTCCAAAATCAAAGGGCTCGGGAGAAGCTGAAAAAGAAGAATCTCACTTCGGATGTTCAAGTGCCCAAGCAAAGACCAGGGCTTGTTGGTGGATCCATCATGCACGGTGAGGACATCTTTGGCAATATGAAGACTACTTCCGACGGAGGTGGTGGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTCAGCCTTTCTGCGAGGGCAAAGCTGGAAAAATTTTCCGGAGCCGCCGACTCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

149

Amino Acids

16.44

Weight (kDa)

9.3

Isoelectric Point (pI)

57.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	428
AciI	CCGC	1 cut(s)	435
AclWI	GGATC	2 cut(s)	291, 304
AcsI	RAATTY	1 cut(s)	422
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	280
AleI	CACNNNNGTG	1 cut(s)	366
AluBI	AGCT	4 cut(s)	136, 232, 391, 415
AluI	AGCT	4 cut(s)	136, 232, 391, 415
Alw21I	GWGCWC	1 cut(s)	393
AlwI	GGATC	2 cut(s)	291, 304
Ama87I	CYCGRG	1 cut(s)	222
Aor13HI	TCCGGA	1 cut(s)	428
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	222
BaeGI	GKGCMC	1 cut(s)	270
BamHI	GGATCC	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	223, 393
BbsI	GAAGAC	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	26, 308
BciT130I	CCWGG	1 cut(s)	282
BfmI	CTRYAG	2 cut(s)	108, 168
BglI	GCCNNNNNGGC	1 cut(s)	443
BisI	GCNGC	2 cut(s)	51, 435
BlpI	GCTNAGC	1 cut(s)	392
BlsI	GCNGC	2 cut(s)	52, 436
Bme1390I	CCNGG	1 cut(s)	282
BmeT110I	CYCGRG	1 cut(s)	222
BmiI	GGNNCC	4 cut(s)	6, 206, 298, 433
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	341
Bpu1102I	GCTNAGC	1 cut(s)	392
BpuEI	CTTGAG	2 cut(s)	113, 407
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	281
BsaWI	WCCGGW	1 cut(s)	428
Bse118I	RCCGGY	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	122
BseAI	TCCGGA	1 cut(s)	428
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	3 cut(s)	19, 37, 262
BseJI	GATNNNNATC	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	406
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	393
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	16, 429
BslFI	GGGAC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	222
Bsp1286I	GDGCHC	3 cut(s)	223, 270, 393
Bsp13I	TCCGGA	1 cut(s)	428
Bsp143I	GATC	3 cut(s)	112, 177, 296
Bsp1720I	GCTNAGC	1 cut(s)	392
BspACI	CCGC	1 cut(s)	435
BspCNI	CTCAG	1 cut(s)	405
BspEI	TCCGGA	1 cut(s)	428
BspLI	GGNNCC	4 cut(s)	6, 206, 298, 433
BspPI	GGATC	2 cut(s)	291, 304
BsrDI	GCAATG	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	3 cut(s)	112, 177, 296
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	3 cut(s)	169, 311, 365
BstC8I	GCNNGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	392, 447
BstF5I	GGATG	3 cut(s)	19, 37, 262
BstKTI	GATC	3 cut(s)	115, 180, 299
BstMBI	GATC	3 cut(s)	112, 177, 296
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 443
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	2 cut(s)	108, 168
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	341
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BtsCI	GGATG	3 cut(s)	19, 37, 262
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	15
CviAII	CATG	2 cut(s)	70, 304
DdeI	CTNAG	2 cut(s)	392, 447
DpnI	GATC	3 cut(s)	114, 179, 298
DpnII	GATC	3 cut(s)	112, 177, 296
Ecl136II	GAGCTC	1 cut(s)	391
Eco24I	GRGCYC	2 cut(s)	223, 393
Eco53kI	GAGCTC	1 cut(s)	391
Eco88I	CYCGRG	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	280
EcoT22I	ATGCAT	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	223, 393
FaeI	CATG	2 cut(s)	73, 307
FaiI	YATR	4 cut(s)	71, 144, 305, 332
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	2 cut(s)	69, 303
Fnu4HI	GCNGC	2 cut(s)	51, 435
FokI	GGATG	3 cut(s)	6, 44, 269
FriOI	GRGCYC	2 cut(s)	223, 393
Fsp4HI	GCNGC	2 cut(s)	51, 435
GluI	GCNGC	2 cut(s)	51, 435
HapII	CCGG	2 cut(s)	16, 429
Hin1II	CATG	2 cut(s)	73, 307
HinfI	GANTC	3 cut(s)	123, 244, 440
HpaII	CCGG	2 cut(s)	16, 429
HphI	GGTGA	1 cut(s)	323
Hpy188I	TCNGA	3 cut(s)	117, 256, 346
Hpy188III	TCNNGA	3 cut(s)	181, 224, 429
Hpy99I	CGWCG	1 cut(s)	350
HpyCH4III	ACNGT	3 cut(s)	169, 311, 365
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	73, 78, 307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 443
HpyF3I	CTNAG	2 cut(s)	392, 447
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	73, 307
Kpn2I	TCCGGA	1 cut(s)	428
Kzo9I	GATC	3 cut(s)	112, 177, 296
LmnI	GCTCC	2 cut(s)	133, 431
LpnPI	CCDG	5 cut(s)	29, 267, 294, 401, 442
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	28
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	3 cut(s)	114, 179, 298
MboI	GATC	3 cut(s)	112, 177, 296
MboII	GAAGA	2 cut(s)	253, 346
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	3 cut(s)	223, 270, 393
MluCI	AATT	1 cut(s)	422
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	6 cut(s)	22, 29, 137, 307, 344, 399
Mph1103I	ATGCAT	1 cut(s)	75
MroI	TCCGGA	1 cut(s)	428
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	2 cut(s)	16, 429
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	79, 443
NdeII	GATC	3 cut(s)	112, 177, 296
NlaIII	CATG	2 cut(s)	73, 307
NlaIV	GGNNCC	4 cut(s)	6, 206, 298, 433
NmeAIII	GCCGAG	2 cut(s)	79, 422
NmuCI	GTSAC	1 cut(s)	359
NsiI	ATGCAT	1 cut(s)	75
NspI	RCATGY	1 cut(s)	73
OliI	CACNNNNGTG	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	123, 244
PkrI	GCNGC	2 cut(s)	52, 436
PleI	GAGTC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	434
Psp124BI	GAGCTC	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	4 cut(s)	6, 206, 298, 433
PsuI	RGATCY	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	51, 435
Sau3AI	GATC	3 cut(s)	112, 177, 296
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	3 cut(s)	223, 270, 393
SetI	ASST	6 cut(s)	138, 195, 234, 355, 393, 417
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	2 cut(s)	108, 168
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	128, 386
SmoI	CTYRAG	2 cut(s)	128, 386
Sse9I	AATT	1 cut(s)	422
SsiI	CCGC	1 cut(s)	435
SstI	GAGCTC	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	280
TaaI	ACNGT	3 cut(s)	169, 311, 365
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	2 cut(s)	27, 180
TasI	AATT	1 cut(s)	422
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	2 cut(s)	123, 244
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	347
TspGWI	ACGGA	1 cut(s)	363
TspRI	CASTG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	73
Zsp2I	ATGCAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.