Rmu_sc0002798.1_g000020

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002798.1
Physical Location & Seq
Reverse (-)
98573 .. 99253
681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002798.1_g000020.1.cds

Sequence Viewer

Length: 681 bp
atgcttcgtaagaagagcagtactaggtggattcccactacagatcagataagaatcctgaaggagcttttctacaacaagggagttaggtccccaaatatagagcagattcagaggatctgtctccagctgaaatggtacggcaagttcgagggcaagaacgtcttttattggtttgcgaaccaaagggctcgggaaaagcagaagaagaggtccacttcggatgttcatgtgcccatgcaaagatcagggcttgttggtgatgataatgttaccaattggaaacatgaggatcaatatattaactttggatcttctgcacctgcttctgcttcttctgctagtgtgatgattgcttttaacgggcagatggggaactatggcggttatggatctatgaacatggagaagagttctagggattgttcaatctcagctggagggggaactagttctactttctttgacatgaatgtagaacaaactttcatggaacaaagaggagaagatcaccaggagattgaaaccctttcattgtttcccgtgcatggtgaggacatctttggcaacatgaagactacttccgatggaggtggcagtcacggtggtggctcacacacttcccttgagctcagcctttcttgcgagggcaaagctggaaaaaatttccggagccgctga

Protein Analysis

226

Amino Acids

25.25

Weight (kDa)

8.93

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17950
fragaria_vesca FvH4_1g11910 FvH4_3g04400
malus_domestica MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica Prupe.7G167700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
Acc36I ACCTGC 1 cut(s) 331
AccIII TCCGGA 1 cut(s) 669
AciI CCGC 2 cut(s) 384, 676
AclWI GGATC 4 cut(s) 125, 300, 319, 400
AcsI RAATTY 1 cut(s) 664
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 2 cut(s) 22, 140
AfiI CCNNNNNNNGG 1 cut(s) 548
AgsI TTSAA 2 cut(s) 429, 524
AhlI ACTAGT 1 cut(s) 449
AjnI CCWGG 1 cut(s) 513
AleI CACNNNNGTG 1 cut(s) 606
AluBI AGCT 5 cut(s) 67, 130, 437, 631, 656
AluI AGCT 5 cut(s) 67, 130, 437, 631, 656
Alw21I GWGCWC 1 cut(s) 633
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 4 cut(s) 125, 300, 319, 400
Ama87I CYCGRG 1 cut(s) 192
Aor13HI TCCGGA 1 cut(s) 669
ApoI RAATTY 1 cut(s) 664
Asp700I GAANNNNTTC 1 cut(s) 451
AspS9I GGNCC 2 cut(s) 90, 213
AsuHPI GGTGA 3 cut(s) 272, 503, 563
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 2 cut(s) 90, 213
BaeGI GKGCMC 1 cut(s) 237
BanII GRGCYC 2 cut(s) 193, 633
BbsI GAAGAC 1 cut(s) 581
Bbv12I GWGCWC 1 cut(s) 633
BccI CCATC 2 cut(s) 364, 581
BceAI ACGGC 1 cut(s) 157
BciT130I CCWGG 1 cut(s) 515
BcoDI GTCTC 1 cut(s) 128
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 4 cut(s) 24, 342, 417, 450
BfmI CTRYAG 1 cut(s) 39
BfuAI ACCTGC 1 cut(s) 331
BisI GCNGC 1 cut(s) 676
BlpI GCTNAGC 1 cut(s) 632
BlsI GCNGC 1 cut(s) 677
BmcAI AGTACT 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 515
Bme18I GGWCC 2 cut(s) 90, 213
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 2 cut(s) 90, 213
BmiI GGNNCC 2 cut(s) 92, 674
BmrFI CCNGG 1 cut(s) 515
BpiI GAAGAC 1 cut(s) 581
BpmI CTGGAG 2 cut(s) 110, 459
Bpu1102I GCTNAGC 1 cut(s) 632
BpuEI CTTGAG 1 cut(s) 647
BsaBI GATNNNNATC 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 669
Bsc4I CCNNNNNNNGG 1 cut(s) 548
Bse8I GATNNNNATC 1 cut(s) 53
BseAI TCCGGA 1 cut(s) 669
BseBI CCWGG 1 cut(s) 515
BseGI GGATG 1 cut(s) 229
BseJI GATNNNNATC 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 548
BseMII CTCAG 2 cut(s) 447, 646
BseRI GAGGAG 1 cut(s) 516
BseSI GKGCMC 1 cut(s) 237
BsgI GTGCAG 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 633
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 670
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 548
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 3 cut(s) 193, 237, 633
Bsp13I TCCGGA 1 cut(s) 669
Bsp143I GATC 7 cut(s) 43, 117, 245, 292, 311, 392, 508
Bsp1720I GCTNAGC 1 cut(s) 632
BspACI CCGC 2 cut(s) 384, 676
BspCNI CTCAG 2 cut(s) 446, 645
BspEI TCCGGA 1 cut(s) 669
BspLI GGNNCC 2 cut(s) 92, 674
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 4 cut(s) 125, 300, 319, 400
BspQI GCTCTTC 1 cut(s) 8
BssMI GATC 7 cut(s) 43, 117, 245, 292, 311, 392, 508
Bst2UI CCWGG 1 cut(s) 515
Bst4CI ACNGT 1 cut(s) 605
Bst6I CTCTTC 3 cut(s) 8, 203, 404
BstDEI CTNAG 2 cut(s) 433, 632
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 7 cut(s) 46, 120, 248, 295, 314, 395, 511
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 7 cut(s) 43, 117, 245, 292, 311, 392, 508
BstMWI GCNNNNNNNGC 2 cut(s) 338, 642
BstNI CCWGG 1 cut(s) 515
BstSCI CCNGG 1 cut(s) 513
BstSFI CTRYAG 1 cut(s) 39
BstSLI GKGCMC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 581
BstX2I RGATCY 3 cut(s) 117, 311, 392
BstYI RGATCY 3 cut(s) 117, 311, 392
BtsCI GGATG 1 cut(s) 229
BveI ACCTGC 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 90, 213
Csp6I GTAC 2 cut(s) 21, 139
CviAII CATG 8 cut(s) 230, 238, 287, 403, 469, 490, 548, 571
CviQI GTAC 2 cut(s) 21, 139
DdeI CTNAG 2 cut(s) 433, 632
DpnI GATC 7 cut(s) 45, 119, 247, 294, 313, 394, 510
DpnII GATC 7 cut(s) 43, 117, 245, 292, 311, 392, 508
Eam1104I CTCTTC 3 cut(s) 8, 203, 404
EarI CTCTTC 3 cut(s) 8, 203, 404
Ecl136II GAGCTC 1 cut(s) 631
Eco24I GRGCYC 2 cut(s) 193, 633
Eco47I GGWCC 2 cut(s) 90, 213
Eco53kI GAGCTC 1 cut(s) 631
Eco57I CTGAAG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 631
EcoO109I RGGNCCY 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 513
EcoT38I GRGCYC 2 cut(s) 193, 633
FaeI CATG 8 cut(s) 233, 241, 290, 406, 472, 493, 551, 574
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 76
FatI CATG 8 cut(s) 229, 237, 286, 402, 468, 489, 547, 570
Fnu4HI GCNGC 1 cut(s) 676
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 2 cut(s) 193, 633
Fsp4HI GCNGC 1 cut(s) 676
FspBI CTAG 4 cut(s) 24, 342, 417, 450
GluI GCNGC 1 cut(s) 676
GsuI CTGGAG 2 cut(s) 110, 459
HapII CCGG 1 cut(s) 670
Hin1II CATG 8 cut(s) 233, 241, 290, 406, 472, 493, 551, 574
HinfI GANTC 3 cut(s) 31, 54, 109
HpaII CCGG 1 cut(s) 670
HphI GGTGA 3 cut(s) 272, 503, 563
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 4 cut(s) 48, 114, 223, 586
Hpy188III TCNNGA 3 cut(s) 58, 194, 670
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 605
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 241, 320, 547
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 642
HpyF3I CTNAG 2 cut(s) 433, 632
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 8 cut(s) 233, 241, 290, 406, 472, 493, 551, 574
Kpn2I TCCGGA 1 cut(s) 669
Kzo9I GATC 7 cut(s) 43, 117, 245, 292, 311, 392, 508
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 2 cut(s) 64, 672
LpnPI CCDG 8 cut(s) 71, 140, 234, 336, 423, 500, 527, 642
MaeI CTAG 4 cut(s) 24, 342, 417, 450
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 271, 599
MalI GATC 7 cut(s) 45, 119, 247, 294, 313, 394, 510
MboI GATC 7 cut(s) 43, 117, 245, 292, 311, 392, 508
MboII GAAGA 8 cut(s) 25, 217, 220, 306, 327, 421, 518, 586
MfeI CAATTG 1 cut(s) 277
MflI RGATCY 3 cut(s) 117, 311, 392
MhlI GDGCHC 3 cut(s) 193, 237, 633
MluCI AATT 2 cut(s) 277, 664
MnlI CCTC 9 cut(s) 108, 145, 204, 283, 434, 494, 547, 584, 640
MroI TCCGGA 1 cut(s) 669
MroXI GAANNNNTTC 1 cut(s) 451
MseI TTAA 2 cut(s) 303, 360
MslI CAYNNNNRTG 1 cut(s) 606
MspA1I CMGCKG 3 cut(s) 130, 437, 678
MspI CCGG 1 cut(s) 670
MspR9I CCNGG 1 cut(s) 515
MunI CAATTG 1 cut(s) 277
MvaI CCWGG 1 cut(s) 515
MwoI GCNNNNNNNGC 2 cut(s) 338, 642
NdeII GATC 7 cut(s) 43, 117, 245, 292, 311, 392, 508
NlaIII CATG 8 cut(s) 233, 241, 290, 406, 472, 493, 551, 574
NlaIV GGNNCC 2 cut(s) 92, 674
NmuCI GTSAC 1 cut(s) 599
OliI CACNNNNGTG 1 cut(s) 606
PaqCI CACCTGC 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 451
PfeI GAWTC 3 cut(s) 31, 54, 109
PkrI GCNGC 1 cut(s) 677
PpuMI RGGWCCY 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 633
Psp5II RGGWCCY 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 513
PspGI CCWGG 1 cut(s) 513
PspN4I GGNNCC 2 cut(s) 92, 674
PspPI GGNCC 2 cut(s) 90, 213
PspPPI RGGWCCY 1 cut(s) 90
PsrI GAACNNNNNNTAC 4 cut(s) 131, 163, 439, 471
PsuI RGATCY 3 cut(s) 117, 311, 392
PvuII CAGCTG 2 cut(s) 130, 437
RsaI GTAC 2 cut(s) 22, 140
RsaNI GTAC 2 cut(s) 21, 139
RseI CAYNNNNRTG 1 cut(s) 606
SacI GAGCTC 1 cut(s) 633
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 2 cut(s) 303, 360
SatI GCNGC 1 cut(s) 676
Sau3AI GATC 7 cut(s) 43, 117, 245, 292, 311, 392, 508
Sau96I GGNCC 2 cut(s) 90, 213
ScaI AGTACT 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 515
SduI GDGCHC 3 cut(s) 193, 237, 633
SfcI CTRYAG 1 cut(s) 39
SinI GGWCC 2 cut(s) 90, 213
SmiMI CAYNNNNRTG 1 cut(s) 606
SmlI CTYRAG 1 cut(s) 626
SmoI CTYRAG 1 cut(s) 626
SpeI ACTAGT 1 cut(s) 449
Sse9I AATT 2 cut(s) 277, 664
SsiI CCGC 2 cut(s) 384, 676
SspMI CTAG 4 cut(s) 24, 342, 417, 450
SstI GAGCTC 1 cut(s) 633
StyD4I CCNGG 1 cut(s) 513
TaaI ACNGT 1 cut(s) 605
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 150
TasI AATT 2 cut(s) 277, 664
TatI WGTACW 1 cut(s) 20
TauI GCSGC 1 cut(s) 678
TfiI GAWTC 3 cut(s) 31, 54, 109
Tru1I TTAA 2 cut(s) 303, 360
Tru9I TTAA 2 cut(s) 303, 360
TseFI GTSAC 1 cut(s) 599
Tsp45I GTSAC 1 cut(s) 599
TspDTI ATGAA 6 cut(s) 218, 413, 478, 485, 522, 587
VpaK11BI GGWCC 2 cut(s) 90, 213
XapI RAATTY 1 cut(s) 664
XmnI GAANNNNTTC 1 cut(s) 451
XspI CTAG 4 cut(s) 24, 342, 417, 450
ZrmI AGTACT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.