Rorug05G0215700

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
22218403 .. 22221536
3134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0215700.1

Sequence Viewer

Length: 2151 bp
ATGGCGATGATAGGGGTCGACATTGTCGTAGGAAAAACATTGGAACACCTGTATGATGATGTTGAAAAGTTGATTAGCAGGAATCTGATGTTTGAATCCCTCTGCAAAGACACCAAATCCAAGCTAGACAATTTGAAACCACTGATCCAAGAGATGGTGCAATGCAACCAGCGGCTGAATCAACCAGACACGAAACTCGAACCGTTAGAAGCATTAATAAAGGGTGGCCTAGAGCTCGTCAGCAAGTGCTCTAAGATCCGTCTGTGGAACATCTACAAGAAGTACAAGTACACCAGCAAATTTCTTGAATTAAATGAATCTCTTCAAAAACAGTTGGATGCACTCAACGTGCAGGTGGCAAGCGATGTGAAAAAGATACTAGAGGTGATCGGGCGCCTAGATCCTATGAATCAAAACCAACAACTACCTGAACTTCCAGAGTTTGTAGTTGGCTTGGATGTTCCCTTGAAGGACTTGAAGAGCAAGCTTCTTGAGGATGATGAGGTATCGATGCTCGTGCTGACTGCTCCGGGAGGATGTGGGAAAACTACTTTGGCTACTATGTTTTGCCAAGATGAAGAAGTCAAAGATAAATTCAAGAACAATATCATCTTCATTCCTGTATCAAAAAATCCTAACTTGGATCAAATAGTACAACAACTATATGGACGCAATAGTTCCTCGGCTCCCCGAAACAACGAAAATGCAATTGAGTCGTGGGCGTCGTGGCGAAGACTATGGAATAAAAATCAAGACCCCTTATTGTTGGTCTTTGATGATGCTTGGTCAGGATATAGATCAGAATTTATTCTTGACAAGTTTGTTCAACTAAAAATGTCAAATTACAAAATTTTAGTCACATCAAGATTTGAACTTCTGAGATTTGGTTCTCCATATCGTTTACCATTATTGGAGTTTGACAATGCTATGAAACTTTTTCATCATTCGGCATCGTTAGGAGATAAGAGTTCTCATATTCCAAAAGATCTTGCAATAAAGGTAGTAGTGCGTTGCAAAGGATTTCCACTTGGCATTACAGTGGTGGGAAGATCACTTTACGGACAACCTATAGAGATCTGGATAAACAGAGAAAGAAAATGGAGTTCTATTCTTGATTTTGAAACTGGATTGTTCTTTGACCTCCGAACCAGCTTAGATGTCTTAGATGAAGAAATGATGGAGTGTTTCTTAGATCTAGCTTCATTTCCTGAAGGCCGAAAAATCCCAGTTACTGCCCTGGTTGATATGTGGGAAGAGTTATACGATCTGCATGAAGATACAGATACGTGGTGCATGGGAAACCTTTATGAACTCAGCAATCGGAGTTTAGTTAATATTCTGGACAGAAGGAGTATAAAGAGGGAGAGGCTTCCCAGGGATACATTCTATGGTCACCACTTTGTTATCCAGCATGATATACTTAGAGAGCTGGCTATCTACCACTCTAAACAAGTCCCCGTAGAGGATAGAAAACGAATGATTATAGACTCATCTGGAGACAATCTCATTCCCAAGTGGTGGAGAGAACAGAAGCATCAAACCATCAAGGCTCGCCTATTATCTATCACAACAGACCAAAATTTCTCAGCAAATTGGCCCAGCATGCAACTACCAGAAGTAGAGGAAATGAACCTTGTCCATTGCAATGGATTCAAGGAATTACCTGTAAAGCTCTGTGATCTGGTTCATTTAAAGAAGCTCAGTATCACCAATTGTAAAGGGTTATTTAGGTTGCCTAAAAGGATTGGAAAGTTAGAGAATTTAGAACTACTGAGGCTAAGGGCATGTTACGGGTTGTTGAACTTACCCCGCTCGATTAGGAATCTCAAAAATTTGAAATTTTTTGACATTTGCGATTGCTACAGGATTGCGGCGTTGCCAGAATACATTGGTGAAATGAAGAGTCTAAAGAAGTTTGACATAAGATATTGCCTGTCACTAAAAATGCTGCCTCAGTCAATTTCGGAACTTGAGCAGTTGGAGGAAGTATTGTGTGATGCCCTTACGCAAAAATTATGGGCACCTTTCTTAGACAGTCTGAAAAAGGTTGACATGGTGGTGGATGATTATTATTCTCCGCCAGTGTTTAACCCATCCCGTTACTTGAACAAACAGATCACGGTGAAGGGAGATAGGAGTTACTTGGCTTAG

Protein Analysis

716

Amino Acids

83.12

Weight (kDa)

7.77

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 10 - 127 2.5e-20 Arabidopsis broad-spectrum mildew resistance protein RPW8
NB-ARC PF00931 156 - 316 2.4e-12 NB-ARC domain
LRR_14 PF23598 544 - 682 8.1e-13 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17950
fragaria_vesca FvH4_1g11910 FvH4_3g04400
malus_domestica MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica Prupe.7G167700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 343
AccB1I GGYRCC 2 cut(s) 393, 2020
AccB7I CCANNNNNTGG 2 cut(s) 154, 1518
AccBSI CCGCTC 1 cut(s) 1812
AccI GTMKAC 1 cut(s) 18
AciI CCGC 4 cut(s) 172, 1810, 1871, 2078
AclWI GGATC 4 cut(s) 139, 250, 395, 651
AcsI RAATTY 8 cut(s) 299, 593, 803, 849, 1579, 1759, 1831, 1838
AcuI CTGAAG 1 cut(s) 1230
AcyI GRCGYC 2 cut(s) 394, 722
AfaI GTAC 3 cut(s) 284, 290, 654
AfiI CCNNNNNNNGG 3 cut(s) 154, 1462, 1518
AjnI CCWGG 2 cut(s) 1236, 1373
AjuI GAANNNNNNNTTGG 2 cut(s) 536, 568
AluBI AGCT 8 cut(s) 124, 235, 487, 1152, 1199, 1429, 1672, 1699
AluI AGCT 8 cut(s) 124, 235, 487, 1152, 1199, 1429, 1672, 1699
Alw21I GWGCWC 2 cut(s) 237, 251
Alw26I GTCTC 1 cut(s) 1491
AlwI GGATC 4 cut(s) 139, 250, 395, 651
AlwNI CAGNNNCTG 2 cut(s) 175, 1232
AoxI GGCC 3 cut(s) 226, 1213, 1595
ApeKI GCWGC 1 cut(s) 1948
ApoI RAATTY 8 cut(s) 299, 593, 803, 849, 1579, 1759, 1831, 1838
ArsI GACNNNNNNTTYG 2 cut(s) 840, 872
AseI ATTAAT 1 cut(s) 215
Asp700I GAANNNNTTC 2 cut(s) 321, 807
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 1 cut(s) 1596
AsuC2I CCSGG 1 cut(s) 531
AsuHPI GGTGA 5 cut(s) 397, 1385, 1699, 1904, 2134
BaeGI GKGCMC 1 cut(s) 2023
BanI GGYRCC 2 cut(s) 393, 2020
BanII GRGCYC 1 cut(s) 237
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BauI CACGAG 1 cut(s) 515
BbsI GAAGAC 1 cut(s) 739
Bbv12I GWGCWC 2 cut(s) 237, 251
BbvI GCAGC 1 cut(s) 1935
BccI CCATC 4 cut(s) 148, 1171, 1550, 2101
BcgI CGANNNNNNTGC 4 cut(s) 499, 533, 696, 730
BciT130I CCWGG 2 cut(s) 1238, 1375
BciVI GTATCC 1 cut(s) 1372
BcnI CCSGG 1 cut(s) 531
BcoDI GTCTC 1 cut(s) 1491
BfaI CTAG 5 cut(s) 125, 230, 380, 398, 1196
BfmI CTRYAG 2 cut(s) 1068, 1861
BfoI RGCGCY 1 cut(s) 397
BfuAI ACCTGC 1 cut(s) 343
BfuI GTATCC 1 cut(s) 1372
BglII AGATCT 3 cut(s) 985, 1074, 1192
BisI GCNGC 3 cut(s) 173, 1872, 1949
BlsI GCNGC 3 cut(s) 174, 1873, 1950
Bme1390I CCNGG 3 cut(s) 531, 1238, 1375
BmgT120I GGNCC 1 cut(s) 1596
BmiI GGNNCC 3 cut(s) 395, 687, 2022
BmrFI CCNGG 3 cut(s) 531, 1238, 1375
BmrI ACTGGG 1 cut(s) 1220
BmsI GCATC 6 cut(s) 328, 501, 769, 959, 1543, 1987
BmuI ACTGGG 1 cut(s) 1220
BpiI GAAGAC 1 cut(s) 739
BplI GAGNNNNNCTC 2 cut(s) 1488, 1520
BpmI CTGGAG 1 cut(s) 1515
Bpu10I CCTNAGC 1 cut(s) 1778
BpuEI CTTGAG 2 cut(s) 512, 1991
BpuMI CCSGG 1 cut(s) 531
Bsa29I ATCGAT 1 cut(s) 509
BsaAI YACGTR 1 cut(s) 1287
BsaBI GATNNNNATC 1 cut(s) 796
BsaHI GRCGYC 2 cut(s) 394, 722
BsaJI CCNNGG 4 cut(s) 681, 1236, 1373, 1374
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 1462, 1518
Bse1I ACTGG 3 cut(s) 1129, 1226, 2081
Bse3DI GCAATG 3 cut(s) 167, 1639, 1651
Bse8I GATNNNNATC 1 cut(s) 796
BseBI CCWGG 2 cut(s) 1238, 1375
BseCI ATCGAT 1 cut(s) 509
BseDI CCNNGG 4 cut(s) 681, 1236, 1373, 1374
BseGI GGATG 6 cut(s) 343, 463, 502, 542, 2068, 2093
BseJI GATNNNNATC 1 cut(s) 796
BseLI CCNNNNNNNGG 3 cut(s) 154, 1462, 1518
BseMI GCAATG 3 cut(s) 167, 1639, 1651
BseMII CTCAG 6 cut(s) 869, 1327, 1599, 1714, 1763, 1967
BseNI ACTGG 3 cut(s) 1129, 1226, 2081
BseSI GKGCMC 1 cut(s) 2023
BseXI GCAGC 1 cut(s) 1935
BseYI CCCAGC 1 cut(s) 1598
BsgI GTGCAG 1 cut(s) 371
BshFI GGCC 3 cut(s) 228, 1215, 1597
BshNI GGYRCC 2 cut(s) 393, 2020
BshVI ATCGAT 1 cut(s) 509
BsiHKAI GWGCWC 2 cut(s) 237, 251
BsiSI CCGG 1 cut(s) 530
BslFI GGGAC 1 cut(s) 1439
BslI CCNNNNNNNGG 3 cut(s) 154, 1462, 1518
BsmAI GTCTC 1 cut(s) 1491
BsmFI GGGAC 1 cut(s) 1439
BsnI GGCC 3 cut(s) 228, 1215, 1597
Bsp1286I GDGCHC 3 cut(s) 237, 251, 2023
BspACI CCGC 4 cut(s) 172, 1810, 1871, 2078
BspANI GGCC 3 cut(s) 228, 1215, 1597
BspCNI CTCAG 6 cut(s) 870, 1326, 1598, 1713, 1764, 1966
BspDI ATCGAT 1 cut(s) 509
BspLI GGNNCC 3 cut(s) 395, 687, 2022
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 4 cut(s) 139, 250, 395, 651
BspQI GCTCTTC 1 cut(s) 473
BspT107I GGYRCC 2 cut(s) 393, 2020
BsrBI CCGCTC 1 cut(s) 1812
BsrDI GCAATG 3 cut(s) 167, 1639, 1651
BsrI ACTGG 3 cut(s) 1129, 1226, 2081
BssECI CCNNGG 4 cut(s) 681, 1236, 1373, 1374
BssNI GRCGYC 2 cut(s) 394, 722
BssSI CACGAG 1 cut(s) 515
Bst2BI CACGAG 1 cut(s) 515
Bst2UI CCWGG 2 cut(s) 1238, 1375
Bst4CI ACNGT 5 cut(s) 204, 333, 1039, 2036, 2122
Bst6I CTCTTC 4 cut(s) 327, 473, 1248, 1895
BstACI GRCGYC 2 cut(s) 394, 722
BstBAI YACGTR 1 cut(s) 1287
BstC8I GCNNGC 5 cut(s) 361, 485, 1431, 1552, 1604
BstEII GGTNACC 1 cut(s) 1391
BstF5I GGATG 6 cut(s) 343, 463, 502, 542, 2068, 2093
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 1 cut(s) 396
BstMAI GTCTC 1 cut(s) 1491
BstMWI GCNNNNNNNGC 1 cut(s) 1603
BstNI CCWGG 2 cut(s) 1238, 1375
BstNSI RCATGY 2 cut(s) 1606, 1788
BstPI GGTNACC 1 cut(s) 1391
BstSCI CCNGG 3 cut(s) 529, 1236, 1373
BstSFI CTRYAG 2 cut(s) 1068, 1861
BstSLI GKGCMC 1 cut(s) 2023
BstV1I GCAGC 1 cut(s) 1935
BstV2I GAAGAC 1 cut(s) 739
BstX2I RGATCY 5 cut(s) 255, 400, 985, 1074, 1192
BstXI CCANNNNNNTGG 1 cut(s) 1646
BstYI RGATCY 5 cut(s) 255, 400, 985, 1074, 1192
Bsu15I ATCGAT 1 cut(s) 509
BsuI GTATCC 1 cut(s) 1372
BsuRI GGCC 3 cut(s) 228, 1215, 1597
BsuTUI ATCGAT 1 cut(s) 509
BtgZI GCGATG 2 cut(s) 20, 378
BtsCI GGATG 6 cut(s) 343, 463, 502, 542, 2068, 2093
BtsIMutI CAGTG 3 cut(s) 140, 1044, 2088
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 5 cut(s) 361, 485, 1431, 1552, 1604
CaiI CAGNNNCTG 2 cut(s) 175, 1232
CfoI GCGC 1 cut(s) 396
Cfr13I GGNCC 1 cut(s) 1596
ClaI ATCGAT 1 cut(s) 509
CseI GACGC 2 cut(s) 678, 711
Csp6I GTAC 3 cut(s) 283, 289, 653
CviAII CATG 6 cut(s) 1271, 1294, 1412, 1603, 1785, 2053
CviQI GTAC 3 cut(s) 283, 289, 653
DinI GGCGCC 1 cut(s) 395
DraI TTTAAA 1 cut(s) 1692
Eam1104I CTCTTC 4 cut(s) 327, 473, 1248, 1895
EarI CTCTTC 4 cut(s) 327, 473, 1248, 1895
EciI GGCGGA 1 cut(s) 2067
Ecl136II GAGCTC 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 1230
Eco91I GGTNACC 1 cut(s) 1391
EcoICRI GAGCTC 1 cut(s) 235
EcoO65I GGTNACC 1 cut(s) 1391
EcoRII CCWGG 2 cut(s) 1236, 1373
EcoT38I GRGCYC 1 cut(s) 237
EgeI GGCGCC 1 cut(s) 395
EheI GGCGCC 1 cut(s) 395
FaeI CATG 6 cut(s) 1274, 1297, 1415, 1606, 1788, 2056
FaqI GGGAC 1 cut(s) 1439
FatI CATG 6 cut(s) 1270, 1293, 1411, 1602, 1784, 2052
FauI CCCGC 1 cut(s) 1817
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 3 cut(s) 173, 1872, 1949
FokI GGATG 6 cut(s) 350, 470, 509, 549, 2075, 2080
FriOI GRGCYC 1 cut(s) 237
Fsp4HI GCNGC 3 cut(s) 173, 1872, 1949
FspBI CTAG 5 cut(s) 125, 230, 380, 398, 1196
GlaI GCGC 1 cut(s) 395
GluI GCNGC 3 cut(s) 173, 1872, 1949
GsaI CCCAGC 1 cut(s) 1602
GsuI CTGGAG 1 cut(s) 1515
HaeII RGCGCY 1 cut(s) 397
HaeIII GGCC 3 cut(s) 228, 1215, 1597
HapII CCGG 1 cut(s) 530
HgaI GACGC 2 cut(s) 678, 711
HhaI GCGC 1 cut(s) 396
Hin1I GRCGYC 2 cut(s) 394, 722
Hin1II CATG 6 cut(s) 1274, 1297, 1415, 1606, 1788, 2056
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HincII GTYRAC 2 cut(s) 19, 2050
HindII GTYRAC 2 cut(s) 19, 2050
HindIII AAGCTT 1 cut(s) 485
HpaII CCGG 1 cut(s) 530
HphI GGTGA 5 cut(s) 397, 1385, 1699, 1904, 2134
Hpy166II GTNNAC 4 cut(s) 19, 291, 902, 2050
Hpy188I TCNGA 7 cut(s) 87, 802, 879, 1145, 1323, 1966, 2040
Hpy8I GTNNAC 4 cut(s) 19, 291, 902, 2050
Hpy99I CGWCG 1 cut(s) 727
HpyAV CCTTC 4 cut(s) 463, 1205, 1341, 2119
HpyCH4III ACNGT 5 cut(s) 204, 333, 1039, 2036, 2122
HpyCH4IV ACGT 2 cut(s) 348, 1286
HpyF10VI GCNNNNNNNGC 1 cut(s) 1603
HpySE526I ACGT 2 cut(s) 348, 1286
Hsp92I GRCGYC 2 cut(s) 394, 722
Hsp92II CATG 6 cut(s) 1274, 1297, 1415, 1606, 1788, 2056
HspAI GCGC 1 cut(s) 394
KasI GGCGCC 1 cut(s) 393
LguI GCTCTTC 1 cut(s) 473
LmnI GCTCC 2 cut(s) 532, 691
Lsp1109I GCAGC 1 cut(s) 1935
LweI GCATC 6 cut(s) 328, 501, 769, 959, 1543, 1987
MaeI CTAG 5 cut(s) 125, 230, 380, 398, 1196
MaeII ACGT 2 cut(s) 348, 1286
MaeIII GTNAC 7 cut(s) 856, 1228, 1391, 1787, 1935, 2099, 2138
MbiI CCGCTC 1 cut(s) 1812
MfeI CAATTG 2 cut(s) 708, 1711
MflI RGATCY 5 cut(s) 255, 400, 985, 1074, 1192
MhlI GDGCHC 3 cut(s) 237, 251, 2023
Mly113I GGCGCC 1 cut(s) 394
MlyI GAGTC 3 cut(s) 722, 1481, 1912
MmeI TCCRAC 2 cut(s) 315, 1959
MroXI GAANNNNTTC 2 cut(s) 321, 807
MseI TTAA 5 cut(s) 215, 311, 1332, 1691, 2088
MslI CAYNNNNRTG 4 cut(s) 51, 1037, 1644, 2057
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 1 cut(s) 530
MspR9I CCNGG 3 cut(s) 531, 1238, 1375
MunI CAATTG 2 cut(s) 708, 1711
MvaI CCWGG 2 cut(s) 1238, 1375
MwoI GCNNNNNNNGC 1 cut(s) 1603
NarI GGCGCC 1 cut(s) 394
NciI CCSGG 1 cut(s) 531
NlaIII CATG 6 cut(s) 1274, 1297, 1415, 1606, 1788, 2056
NlaIV GGNNCC 3 cut(s) 395, 687, 2022
NmeAIII GCCGAG 1 cut(s) 662
NmuCI GTSAC 3 cut(s) 856, 1391, 1935
NspI RCATGY 2 cut(s) 1606, 1788
PaeI GCATGC 1 cut(s) 1606
PaqCI CACCTGC 1 cut(s) 343
PasI CCCWGGG 1 cut(s) 1374
PciSI GCTCTTC 1 cut(s) 473
PcsI WCGNNNNNNNCGW 2 cut(s) 24, 722
PdmI GAANNNNTTC 2 cut(s) 321, 807
PfeI GAWTC 7 cut(s) 82, 95, 178, 317, 409, 1650, 1822
PflFI GACNNNGTC 1 cut(s) 23
PflMI CCANNNNNTGG 2 cut(s) 154, 1518
PfoI TCCNGGA 1 cut(s) 529
PkrI GCNGC 3 cut(s) 174, 1873, 1950
PleI GAGTC 3 cut(s) 721, 1481, 1911
PluTI GGCGCC 1 cut(s) 397
PpsI GAGTC 3 cut(s) 721, 1481, 1911
Ppu21I YACGTR 1 cut(s) 1287
PshBI ATTAAT 1 cut(s) 215
Psp124BI GAGCTC 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 1236, 1373
PspEI GGTNACC 1 cut(s) 1391
PspFI CCCAGC 1 cut(s) 1598
PspGI CCWGG 2 cut(s) 1236, 1373
PspN4I GGNNCC 3 cut(s) 395, 687, 2022
PspPI GGNCC 1 cut(s) 1596
PstNI CAGNNNCTG 2 cut(s) 175, 1232
PsuI RGATCY 5 cut(s) 255, 400, 985, 1074, 1192
PsyI GACNNNGTC 1 cut(s) 23
RsaI GTAC 3 cut(s) 284, 290, 654
RsaNI GTAC 3 cut(s) 283, 289, 653
RseI CAYNNNNRTG 4 cut(s) 51, 1037, 1644, 2057
SacI GAGCTC 1 cut(s) 237
SalI GTCGAC 1 cut(s) 17
SapI GCTCTTC 1 cut(s) 473
SaqAI TTAA 5 cut(s) 215, 311, 1332, 1691, 2088
SatI GCNGC 3 cut(s) 173, 1872, 1949
Sau96I GGNCC 1 cut(s) 1596
SchI GAGTC 3 cut(s) 722, 1481, 1912
ScrFI CCNGG 3 cut(s) 531, 1238, 1375
SduI GDGCHC 3 cut(s) 237, 251, 2023
SfaNI GCATC 6 cut(s) 328, 501, 769, 959, 1543, 1987
SfcI CTRYAG 2 cut(s) 1068, 1861
SfoI GGCGCC 1 cut(s) 395
SmiMI CAYNNNNRTG 4 cut(s) 51, 1037, 1644, 2057
SmlI CTYRAG 2 cut(s) 491, 1970
SmoI CTYRAG 2 cut(s) 491, 1970
SphI GCATGC 1 cut(s) 1606
SsiI CCGC 4 cut(s) 172, 1810, 1871, 2078
SspDI GGCGCC 1 cut(s) 393
SspI AATATT 1 cut(s) 1336
SspMI CTAG 5 cut(s) 125, 230, 380, 398, 1196
SstI GAGCTC 1 cut(s) 237
StyD4I CCNGG 3 cut(s) 529, 1236, 1373
TaaI ACNGT 5 cut(s) 204, 333, 1039, 2036, 2122
TaiI ACGT 2 cut(s) 351, 1289
TaqI TCGA 4 cut(s) 18, 198, 509, 1814
TatI WGTACW 3 cut(s) 282, 288, 652
TauI GCSGC 2 cut(s) 175, 1874
TfiI GAWTC 7 cut(s) 82, 95, 178, 317, 409, 1650, 1822
Tru1I TTAA 5 cut(s) 215, 311, 1332, 1691, 2088
Tru9I TTAA 5 cut(s) 215, 311, 1332, 1691, 2088
TscAI CASTG 3 cut(s) 147, 1044, 2088
TseFI GTSAC 3 cut(s) 856, 1391, 1935
TseI GCWGC 1 cut(s) 1948
Tsp45I GTSAC 3 cut(s) 856, 1391, 1935
TspGWI ACGGA 2 cut(s) 248, 1074
TspRI CASTG 3 cut(s) 147, 1044, 2088
Tth111I GACNNNGTC 1 cut(s) 23
Van91I CCANNNNNTGG 2 cut(s) 154, 1518
VspI ATTAAT 1 cut(s) 215
XapI RAATTY 8 cut(s) 299, 593, 803, 849, 1579, 1759, 1831, 1838
XceI RCATGY 2 cut(s) 1606, 1788
XmiI GTMKAC 1 cut(s) 18
XmnI GAANNNNTTC 2 cut(s) 321, 807
XspI CTAG 5 cut(s) 125, 230, 380, 398, 1196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.