Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Forward (+)

22235236 .. 22237496

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0216100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1806 bp

ATGGCTACTCTATTGCCTCTCCTCTTCCTCCTCCTCCTCCAACCTCTCTTCTCCATTGCCAATGTCCACAAACTCAACCAACTCAGATCAGAGCTCATCTCCCAATCCACTTCTCTCAATGCCACCTCACCCACCCTTTACTTTGAAGTAACCCAACCCATTCCAGTACCCCCAACCAAGCCTTGTTCTGAGCTCATTCTCCAACATGACTTTGCCTACACTTATGGCAAACCACCTGTCTTTGCCAACTACTCCCCACCCTCAAATTGCCCATCTCAGAACTTCTCCAAGATTGTTCTTGAATGGAAAGCTACAAGCAAAGGAAGACAATATGACCGAATTTTTGGGGTTTGGCTTTCTGGGGTTGAGCTTCTCAGGAGCTGCACAGCTGAGCCAAGGACCAATGGGATTGTCTGGAGTGTTGAGAAGGACATCACCAGGTACTATTCTTTGCTCCAAAAGAACCAGACACTAGCTGTTTATCTTGGCAATTTGGTTGATTCAACATATACTGGAGTTTACCATGTGAATATAAGTTTTCATTTTTATCCTGCTGAGGCGAGTTTGCATAGTTATGATCAAAATGTGGGGGATTTGGCATCTGGGTACCATTCTTGGGCGGATTTGATTCTGCCCATTTCGAGAAATCTGCCTTTGACTGATGGGTTGTGGTTTGAAGTTGAAAATTCAACTGATACCGAGTCGAAGGAATTTGAGATTCCTCGAAATGCTTATAGGGCTGTGTTGGAGGTTTATGTTTCATTTCATGAGAATGATGAGTTTTGGTATGCCAATCCTACTAATGAGTACATTGCTGCCAACAACCTTACTGGCACGCCCGGAAATGGGCCTTTTAGGGAGGTTGTGGTGAGCTTAGATGGTGTGGTTGTTGGTGCTGTATGGCCTTTTACTGTGGTTTACACTGGAGGGGTCAATCCTCTTCTGTGGAGACCCATTACCGGCATTGGCTCATTTGATCTACCTTCTTATGATATCGAAATCACGCCGTTTTTAGGGAACATATTGGATGGGAAGAGCCACAAGATTGGGTTTAATGTTACCAATGCCTTGAATGTATGGTACATTGATGCAAATTTGCATATTTGGTTGGACAAACAGGGCACAAGAACTCAAGCACAGCTTGTGAAGCATACTAGCTTGCCCCTTATTGTTTCAGTGGTGTCGGATTTTGTGGGTTTAAATGGCACATTTGTGACAAGGGTTAGCAGGTCAGTCTCATCAACTGGGTGGGTGAAGTCCTCTAATGGGAATATCACAACCCAGTCAATTCAAGATTTTTCCTACCTTAATAAAATGATCATGGGGAATGATGGCAATTTGCAGACAGTGGACCAGACCATAAATTTCAATGATACCGTTCTTGTTAAGACGCCGTCTTCCTATGTTCATTCACTGAAATCAAACAAATCATTTCTCCTTTCCTTGTACACTGACTTGTTGGAACAAGAAGATGGAACTTATTTATATGTGACAAACGTTGATTTGGGATTCATTGAGAAGAAATCTGCAAGCGGTGGTTCAAGACTCTTGGAGAGCTCTCTCAGAAATTTGCAGACTGCAGAGGGTAATATGGTTGTAAAAAACAATTTGGTAGTTAGCGGAGTGGGGAATACACAGGAAGTGTACAGATATCATGGTGGCAAATTCTGTTACTTCAGAAATGTCAGTAGCTCAAACTACACCATACTTTATGATGAAGTGGAGAATACATGCCACAAAAAAGCCAAGTCTAATTTTGATTTTGTTTTGAGAAGACTGTGGCCTTTTGGTACTGGATTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

601

Amino Acids

67.31

Weight (kDa)

5.93

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNGaseA	PF12222	60 - 384	2.3e-105	Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
PNGase_A_C	PF25156	403 - 480	3.2e-20	PNGase_A C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1218
Acc65I	GGTACC	1 cut(s)	606
AccB1I	GGYRCC	1 cut(s)	606
AciI	CCGC	3 cut(s)	620, 1533, 1620
AclI	AACGTT	1 cut(s)	1497
AcsI	RAATTY	7 cut(s)	339, 685, 710, 1093, 1363, 1567, 1664
AcuI	CTGAAG	1 cut(s)	1660
AcyI	GRCGYC	1 cut(s)	1391
AfaI	GTAC	8 cut(s)	168, 443, 608, 809, 1082, 1448, 1646, 1792
AfiI	CCNNNNNNNGG	6 cut(s)	616, 845, 846, 959, 1013, 1266
AjnI	CCWGG	1 cut(s)	437
AleI	CACNNNNGTG	1 cut(s)	1211
Alw21I	GWGCWC	3 cut(s)	96, 195, 1559
Alw26I	GTCTC	2 cut(s)	943, 1240
AlwNI	CAGNNNCTG	1 cut(s)	381
AoxI	GGCC	3 cut(s)	848, 902, 1781
ApeKI	GCWGC	2 cut(s)	381, 815
ApoI	RAATTY	7 cut(s)	339, 685, 710, 1093, 1363, 1567, 1664
ArsI	GACNNNNNNTTYG	4 cut(s)	222, 254, 326, 358
Asp718I	GGTACC	1 cut(s)	606
AspS9I	GGNCC	3 cut(s)	399, 848, 1351
AsuC2I	CCSGG	1 cut(s)	840
AsuHPI	GGTGA	4 cut(s)	120, 427, 880, 1264
AvaII	GGWCC	2 cut(s)	399, 1351
BaeGI	GKGCMC	1 cut(s)	1124
BanI	GGYRCC	1 cut(s)	606
BanII	GRGCYC	3 cut(s)	96, 195, 1559
BbsI	GAAGAC	3 cut(s)	331, 1389, 1780
Bbv12I	GWGCWC	3 cut(s)	96, 195, 1559
BbvCI	CCTCAGC	1 cut(s)	555
BbvI	GCAGC	2 cut(s)	368, 802
BccI	CCATC	6 cut(s)	280, 656, 872, 1022, 1325, 1466
BceAI	ACGGC	2 cut(s)	991, 1378
BcgI	CGANNNNNNTGC	2 cut(s)	631, 665
BciT130I	CCWGG	1 cut(s)	439
BclI	TGATCA	2 cut(s)	577, 1317
BcnI	CCSGG	1 cut(s)	840
BcoDI	GTCTC	2 cut(s)	943, 1240
BfaI	CTAG	2 cut(s)	473, 1155
BfmI	CTRYAG	1 cut(s)	1578
BfuAI	ACCTGC	1 cut(s)	1218
BisI	GCNGC	2 cut(s)	382, 816
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	2 cut(s)	383, 817
Bme1390I	CCNGG	2 cut(s)	439, 840
Bme18I	GGWCC	2 cut(s)	399, 1351
BmgT120I	GGNCC	3 cut(s)	399, 848, 1351
BmiI	GGNNCC	1 cut(s)	608
BmrFI	CCNGG	2 cut(s)	439, 840
BmrI	ACTGGG	2 cut(s)	1254, 1276
BmsI	GCATC	2 cut(s)	608, 1078
BmuI	ACTGGG	2 cut(s)	1254, 1276
BpiI	GAAGAC	3 cut(s)	331, 1389, 1780
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	3 cut(s)	436, 534, 945
Bpu10I	CCTNAGC	1 cut(s)	555
Bpu1102I	GCTNAGC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	1116
BpuMI	CCSGG	1 cut(s)	840
BsaHI	GRCGYC	1 cut(s)	1391
BsaI	GGTCTC	1 cut(s)	943
BsaJI	CCNNGG	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	6 cut(s)	616, 845, 846, 959, 1013, 1266
Bse118I	RCCGGY	1 cut(s)	959
Bse1I	ACTGG	7 cut(s)	164, 517, 835, 928, 1249, 1282, 1798
Bse3DI	GCAATG	2 cut(s)	54, 810
BseBI	CCWGG	1 cut(s)	439
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	1 cut(s)	1033
BseLI	CCNNNNNNNGG	6 cut(s)	616, 845, 846, 959, 1013, 1266
BseMI	GCAATG	2 cut(s)	54, 810
BseMII	CTCAG	7 cut(s)	97, 180, 290, 381, 388, 546, 1576
BseNI	ACTGG	7 cut(s)	164, 517, 835, 928, 1249, 1282, 1798
BseRI	GAGGAG	4 cut(s)	11, 20, 23, 26
BseSI	GKGCMC	1 cut(s)	1124
BseXI	GCAGC	2 cut(s)	368, 802
BsgI	GTGCAG	1 cut(s)	367
BshFI	GGCC	3 cut(s)	850, 904, 1783
BshNI	GGYRCC	1 cut(s)	606
BsiHKAI	GWGCWC	3 cut(s)	96, 195, 1559
BsiSI	CCGG	2 cut(s)	840, 960
BslI	CCNNNNNNNGG	6 cut(s)	616, 845, 846, 959, 1013, 1266
BsmAI	GTCTC	2 cut(s)	943, 1240
BsnI	GGCC	3 cut(s)	850, 904, 1783
Bso31I	GGTCTC	1 cut(s)	943
Bsp1286I	GDGCHC	4 cut(s)	96, 195, 1124, 1559
Bsp1407I	TGTACA	2 cut(s)	1446, 1644
Bsp143I	GATC	4 cut(s)	86, 577, 976, 1317
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	3 cut(s)	620, 1533, 1620
BspANI	GGCC	3 cut(s)	850, 904, 1783
BspCNI	CTCAG	7 cut(s)	96, 181, 289, 382, 387, 547, 1575
BspHI	TCATGA	1 cut(s)	766
BspLI	GGNNCC	1 cut(s)	608
BspMAI	CTGCAG	1 cut(s)	1582
BspMI	ACCTGC	1 cut(s)	1218
BspQI	GCTCTTC	1 cut(s)	1028
BspT107I	GGYRCC	1 cut(s)	606
BspTNI	GGTCTC	1 cut(s)	943
BsrDI	GCAATG	2 cut(s)	54, 810
BsrFI	RCCGGY	1 cut(s)	959
BsrGI	TGTACA	2 cut(s)	1446, 1644
BsrI	ACTGG	7 cut(s)	164, 517, 835, 928, 1249, 1282, 1798
BssAI	RCCGGY	1 cut(s)	959
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	4 cut(s)	86, 577, 976, 1317
BssNI	GRCGYC	1 cut(s)	1391
BssT1I	CCWWGG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	439
Bst4CI	ACNGT	4 cut(s)	913, 1348, 1378, 1779
Bst6I	CTCTTC	4 cut(s)	29, 53, 945, 1028
BstACI	GRCGYC	1 cut(s)	1391
BstAUI	TGTACA	2 cut(s)	1446, 1644
BstC8I	GCNNGC	3 cut(s)	836, 1160, 1531
BstDEI	CTNAG	8 cut(s)	83, 189, 276, 374, 390, 555, 874, 1562
BstF5I	GGATG	1 cut(s)	1033
BstKTI	GATC	4 cut(s)	89, 580, 979, 1320
BstMAI	GTCTC	2 cut(s)	943, 1240
BstMBI	GATC	4 cut(s)	86, 577, 976, 1317
BstMWI	GCNNNNNNNGC	2 cut(s)	737, 1147
BstNI	CCWGG	1 cut(s)	439
BstNSI	RCATGY	1 cut(s)	1734
BstSCI	CCNGG	2 cut(s)	437, 838
BstSFI	CTRYAG	1 cut(s)	1578
BstSLI	GKGCMC	1 cut(s)	1124
BstV1I	GCAGC	2 cut(s)	368, 802
BstV2I	GAAGAC	3 cut(s)	331, 1389, 1780
BstXI	CCANNNNNNTGG	1 cut(s)	1046
BsuRI	GGCC	3 cut(s)	850, 904, 1783
BtsCI	GGATG	1 cut(s)	1033
BtsIMutI	CAGTG	5 cut(s)	921, 1182, 1353, 1412, 1449
BveI	ACCTGC	1 cut(s)	1218
Cac8I	GCNNGC	3 cut(s)	836, 1160, 1531
CaiI	CAGNNNCTG	1 cut(s)	381
CciI	TCATGA	1 cut(s)	766
Cfr10I	RCCGGY	1 cut(s)	959
Cfr13I	GGNCC	3 cut(s)	399, 848, 1351
CseI	GACGC	1 cut(s)	1399
CsiI	ACCWGGT	1 cut(s)	437
Csp6I	GTAC	8 cut(s)	167, 442, 607, 808, 1081, 1447, 1645, 1791
CviAII	CATG	6 cut(s)	206, 524, 767, 1321, 1655, 1731
CviQI	GTAC	8 cut(s)	167, 442, 607, 808, 1081, 1447, 1645, 1791
DdeI	CTNAG	8 cut(s)	83, 189, 276, 374, 390, 555, 874, 1562
DpnI	GATC	4 cut(s)	88, 579, 978, 1319
DpnII	GATC	4 cut(s)	86, 577, 976, 1317
DraI	TTTAAA	1 cut(s)	1200
Eam1104I	CTCTTC	4 cut(s)	29, 53, 945, 1028
EarI	CTCTTC	4 cut(s)	29, 53, 945, 1028
EciI	GGCGGA	1 cut(s)	635
Ecl136II	GAGCTC	3 cut(s)	94, 193, 1557
Eco130I	CCWWGG	1 cut(s)	395
Eco24I	GRGCYC	3 cut(s)	96, 195, 1559
Eco31I	GGTCTC	1 cut(s)	943
Eco32I	GATATC	2 cut(s)	994, 1652
Eco47I	GGWCC	2 cut(s)	399, 1351
Eco53kI	GAGCTC	3 cut(s)	94, 193, 1557
Eco57I	CTGAAG	1 cut(s)	1660
EcoICRI	GAGCTC	3 cut(s)	94, 193, 1557
EcoRII	CCWGG	1 cut(s)	437
EcoRV	GATATC	2 cut(s)	994, 1652
EcoT14I	CCWWGG	1 cut(s)	395
EcoT38I	GRGCYC	3 cut(s)	96, 195, 1559
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	6 cut(s)	209, 527, 770, 1324, 1658, 1734
FalI	AAGNNNNNCTT	2 cut(s)	1125, 1157
FatI	CATG	6 cut(s)	205, 523, 766, 1320, 1654, 1730
FbaI	TGATCA	2 cut(s)	577, 1317
Fnu4HI	GCNGC	2 cut(s)	382, 816
FokI	GGATG	1 cut(s)	1040
FriOI	GRGCYC	3 cut(s)	96, 195, 1559
Fsp4HI	GCNGC	2 cut(s)	382, 816
FspBI	CTAG	2 cut(s)	473, 1155
GluI	GCNGC	2 cut(s)	382, 816
GsuI	CTGGAG	3 cut(s)	436, 534, 945
HaeIII	GGCC	3 cut(s)	850, 904, 1783
HapII	CCGG	2 cut(s)	840, 960
HgaI	GACGC	1 cut(s)	1399
Hin1I	GRCGYC	1 cut(s)	1391
Hin1II	CATG	6 cut(s)	209, 527, 770, 1324, 1658, 1734
HinfI	GANTC	6 cut(s)	500, 628, 701, 718, 1509, 1545
HpaII	CCGG	2 cut(s)	840, 960
HphI	GGTGA	4 cut(s)	120, 427, 880, 1264
Hpy166II	GTNNAC	6 cut(s)	67, 520, 919, 1351, 1449, 1645
Hpy188I	TCNGA	7 cut(s)	86, 91, 190, 279, 1186, 1565, 1679
Hpy188III	TCNNGA	7 cut(s)	299, 376, 415, 642, 767, 1292, 1542
Hpy8I	GTNNAC	6 cut(s)	67, 520, 919, 1351, 1449, 1645
HpyAV	CCTTC	3 cut(s)	421, 700, 993
HpyCH4III	ACNGT	4 cut(s)	913, 1348, 1378, 1779
HpyCH4IV	ACGT	1 cut(s)	1497
HpyCH4V	TGCA	8 cut(s)	384, 568, 1091, 1099, 1342, 1529, 1573, 1580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	737, 1147
HpyF3I	CTNAG	8 cut(s)	83, 189, 276, 374, 390, 555, 874, 1562
HpySE526I	ACGT	1 cut(s)	1497
Hsp92I	GRCGYC	1 cut(s)	1391
Hsp92II	CATG	6 cut(s)	209, 527, 770, 1324, 1658, 1734
KpnI	GGTACC	1 cut(s)	610
Ksp22I	TGATCA	2 cut(s)	577, 1317
Kzo9I	GATC	4 cut(s)	86, 577, 976, 1317
LguI	GCTCTTC	1 cut(s)	1028
LmnI	GCTCC	2 cut(s)	378, 459
Lsp1109I	GCAGC	2 cut(s)	368, 802
LweI	GCATC	2 cut(s)	608, 1078
MabI	ACCWGGT	1 cut(s)	437
MaeI	CTAG	2 cut(s)	473, 1155
MaeII	ACGT	1 cut(s)	1497
MaeIII	GTNAC	5 cut(s)	148, 1057, 1213, 1489, 1670
MalI	GATC	4 cut(s)	88, 579, 978, 1319
MboI	GATC	4 cut(s)	86, 577, 976, 1317
MboII	GAAGA	9 cut(s)	16, 40, 336, 932, 1045, 1389, 1481, 1531, 1785
MhlI	GDGCHC	4 cut(s)	96, 195, 1124, 1559
MlyI	GAGTC	2 cut(s)	710, 1539
MmeI	TCCRAC	6 cut(s)	64, 226, 726, 1089, 1164, 1440
MseI	TTAA	4 cut(s)	1053, 1199, 1308, 1386
MslI	CAYNNNNRTG	3 cut(s)	573, 771, 1211
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	2 cut(s)	840, 960
MspR9I	CCNGG	2 cut(s)	439, 840
MvaI	CCWGG	1 cut(s)	439
MwoI	GCNNNNNNNGC	2 cut(s)	737, 1147
NciI	CCSGG	1 cut(s)	840
NdeII	GATC	4 cut(s)	86, 577, 976, 1317
NlaIII	CATG	6 cut(s)	209, 527, 770, 1324, 1658, 1734
NlaIV	GGNNCC	1 cut(s)	608
NmuCI	GTSAC	2 cut(s)	1213, 1489
NspI	RCATGY	1 cut(s)	1734
OliI	CACNNNNGTG	1 cut(s)	1211
PagI	TCATGA	1 cut(s)	766
PciSI	GCTCTTC	1 cut(s)	1028
PfeI	GAWTC	4 cut(s)	500, 628, 718, 1509
PflFI	GACNNNGTC	1 cut(s)	1393
PkrI	GCNGC	2 cut(s)	383, 817
PleI	GAGTC	2 cut(s)	709, 1539
PpsI	GAGTC	2 cut(s)	709, 1539
Psp124BI	GAGCTC	3 cut(s)	96, 195, 1559
Psp1406I	AACGTT	1 cut(s)	1497
Psp6I	CCWGG	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	437
PspN4I	GGNNCC	1 cut(s)	608
PspPI	GGNCC	3 cut(s)	399, 848, 1351
PstI	CTGCAG	1 cut(s)	1582
PstNI	CAGNNNCTG	1 cut(s)	381
PsyI	GACNNNGTC	1 cut(s)	1393
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	8 cut(s)	168, 443, 608, 809, 1082, 1448, 1646, 1792
RsaNI	GTAC	8 cut(s)	167, 442, 607, 808, 1081, 1447, 1645, 1791
RseI	CAYNNNNRTG	3 cut(s)	573, 771, 1211
SacI	GAGCTC	3 cut(s)	96, 195, 1559
SapI	GCTCTTC	1 cut(s)	1028
SaqAI	TTAA	4 cut(s)	1053, 1199, 1308, 1386
SatI	GCNGC	2 cut(s)	382, 816
Sau3AI	GATC	4 cut(s)	86, 577, 976, 1317
Sau96I	GGNCC	3 cut(s)	399, 848, 1351
SchI	GAGTC	2 cut(s)	710, 1539
ScrFI	CCNGG	2 cut(s)	439, 840
SduI	GDGCHC	4 cut(s)	96, 195, 1124, 1559
SexAI	ACCWGGT	1 cut(s)	437
SfaNI	GCATC	2 cut(s)	608, 1078
SfcI	CTRYAG	1 cut(s)	1578
SinI	GGWCC	2 cut(s)	399, 1351
SmiMI	CAYNNNNRTG	3 cut(s)	573, 771, 1211
SmlI	CTYRAG	1 cut(s)	1131
SmoI	CTYRAG	1 cut(s)	1131
SsiI	CCGC	3 cut(s)	620, 1533, 1620
SspMI	CTAG	2 cut(s)	473, 1155
SstI	GAGCTC	3 cut(s)	96, 195, 1559
StyD4I	CCNGG	2 cut(s)	437, 838
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	4 cut(s)	913, 1348, 1378, 1779
TaiI	ACGT	1 cut(s)	1500
TaqI	TCGA	4 cut(s)	641, 704, 724, 996
TaqII	GACCGA	1 cut(s)	351
TatI	WGTACW	3 cut(s)	807, 1446, 1644
TfiI	GAWTC	4 cut(s)	500, 628, 718, 1509
Tru1I	TTAA	4 cut(s)	1053, 1199, 1308, 1386
Tru9I	TTAA	4 cut(s)	1053, 1199, 1308, 1386
TscAI	CASTG	5 cut(s)	928, 1182, 1353, 1419, 1456
TseFI	GTSAC	2 cut(s)	1213, 1489
TseI	GCWGC	2 cut(s)	381, 815
Tsp45I	GTSAC	2 cut(s)	1213, 1489
TspDTI	ATGAA	6 cut(s)	530, 750, 755, 1397, 1501, 1731
TspRI	CASTG	5 cut(s)	928, 1182, 1353, 1419, 1456
Tth111I	GACNNNGTC	1 cut(s)	1393
VpaK11BI	GGWCC	2 cut(s)	399, 1351
XapI	RAATTY	7 cut(s)	339, 685, 710, 1093, 1363, 1567, 1664
XceI	RCATGY	1 cut(s)	1734
XspI	CTAG	2 cut(s)	473, 1155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.