Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Forward (+)

49955495 .. 49956016

Gene Structure 522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39364

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCATTGCAGGCAGAGTAGTACCAGGTGGCTTCCTACTATAGATCAGATAAGAATTCTCAAGGAGCTTTACGATGACAAGGGAGTTAAGTCCCCAACTGTAGAGCAGGTTCAGAGGATCACTCTCCAGCTGAAATGGTACGAACAGATCGAGAACAAGAACGTCTTTTATTGGTTCCAGAACCAAAGGGCTCAGGAGAAGCTGAAGAAGAAGCTCACTTCGGATGTTCAAGTGCCCAAGCAAAGATCAGAGCTTGTTGGTGGATCCATTAATCTCAATTTTGGGTCAACTAGTTCTACTGGTGTTGGTGGATCCATCATGGAACAACGAGGAGAAGATCACCAAGAGATTAAAACCCTTCCACTGTTTCCCATGCACGGTGAGGACATCTTTGGCAACATGAAGATTACTTCCGAGGGAGGTAGTGGCTATGATGACTACTCCGGTGGCGGCTACAACGGTGGCTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCCTCCGGAGCTACTGATTCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

173

Amino Acids

19.35

Weight (kDa)

6.31

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	8 - 67	1e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	97
AccIII	TCCGGA	1 cut(s)	500
AciI	CCGC	1 cut(s)	450
AclWI	GGATC	5 cut(s)	125, 258, 271, 306, 319
AcsI	RAATTY	1 cut(s)	54
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	2 cut(s)	22, 140
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	230
AhlI	ACTAGT	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	8 cut(s)	67, 130, 202, 214, 253, 484, 506, 518
AluI	AGCT	8 cut(s)	67, 130, 202, 214, 253, 484, 506, 518
Alw21I	GWGCWC	1 cut(s)	486
AlwI	GGATC	5 cut(s)	125, 258, 271, 306, 319
Aor13HI	TCCGGA	1 cut(s)	500
ApoI	RAATTY	1 cut(s)	54
AseI	ATTAAT	1 cut(s)	270
AsuHPI	GGTGA	2 cut(s)	332, 392
BaeGI	GKGCMC	1 cut(s)	237
BamHI	GGATCC	2 cut(s)	263, 311
BanII	GRGCYC	2 cut(s)	193, 486
Bbv12I	GWGCWC	1 cut(s)	486
BccI	CCATC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	25
BcuI	ACTAGT	1 cut(s)	290
BfaI	CTAG	1 cut(s)	291
BfmI	CTRYAG	2 cut(s)	39, 99
BfuAI	ACCTGC	1 cut(s)	97
BisI	GCNGC	1 cut(s)	451
BlpI	GCTNAGC	1 cut(s)	485
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	1 cut(s)	25
BmiI	GGNNCC	3 cut(s)	176, 265, 313
BmrFI	CCNGG	1 cut(s)	25
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
BpmI	CTGGAG	1 cut(s)	110
Bpu10I	CCTNAGC	1 cut(s)	192
Bpu1102I	GCTNAGC	1 cut(s)	485
BpuEI	CTTGAG	2 cut(s)	44, 500
BsaJI	CCNNGG	1 cut(s)	414
BsaWI	WCCGGW	2 cut(s)	443, 500
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	304
Bse3DI	GCAATG	1 cut(s)	4
BseAI	TCCGGA	1 cut(s)	500
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	1 cut(s)	4
BseMII	CTCAG	2 cut(s)	206, 499
BseNI	ACTGG	1 cut(s)	304
BseRI	GAGGAG	2 cut(s)	345, 487
BseSI	GKGCMC	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	2 cut(s)	444, 501
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	76
Bsp1286I	GDGCHC	3 cut(s)	193, 237, 486
Bsp13I	TCCGGA	1 cut(s)	500
Bsp143I	GATC	7 cut(s)	43, 117, 147, 245, 263, 311, 337
Bsp1720I	GCTNAGC	1 cut(s)	485
BspACI	CCGC	1 cut(s)	450
BspCNI	CTCAG	2 cut(s)	205, 498
BspEI	TCCGGA	1 cut(s)	500
BspLI	GGNNCC	3 cut(s)	176, 265, 313
BspMI	ACCTGC	1 cut(s)	97
BspPI	GGATC	5 cut(s)	125, 258, 271, 306, 319
BsrDI	GCAATG	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	304
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	7 cut(s)	43, 117, 147, 245, 263, 311, 337
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	4 cut(s)	100, 366, 380, 461
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	3 cut(s)	192, 485, 519
BstF5I	GGATG	1 cut(s)	229
BstKTI	GATC	7 cut(s)	46, 120, 150, 248, 266, 314, 340
BstMBI	GATC	7 cut(s)	43, 117, 147, 245, 263, 311, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	23
BstSFI	CTRYAG	2 cut(s)	39, 99
BstSLI	GKGCMC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	263, 311
BstYI	RGATCY	2 cut(s)	263, 311
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	362
BveI	ACCTGC	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	11
CsiI	ACCWGGT	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	21, 139
CviAII	CATG	3 cut(s)	319, 373, 400
CviQI	GTAC	2 cut(s)	21, 139
DdeI	CTNAG	3 cut(s)	192, 485, 519
DpnI	GATC	7 cut(s)	45, 119, 149, 247, 265, 313, 339
DpnII	GATC	7 cut(s)	43, 117, 147, 245, 263, 311, 337
Ecl136II	GAGCTC	1 cut(s)	484
Eco24I	GRGCYC	2 cut(s)	193, 486
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	484
EcoRI	GAATTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	23
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	2 cut(s)	193, 486
FaeI	CATG	3 cut(s)	322, 376, 403
FaiI	YATR	5 cut(s)	41, 320, 374, 401, 432
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	3 cut(s)	318, 372, 399
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	2 cut(s)	193, 486
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	1 cut(s)	291
GluI	GCNGC	1 cut(s)	451
GsuI	CTGGAG	1 cut(s)	110
HapII	CCGG	2 cut(s)	444, 501
Hin1II	CATG	3 cut(s)	322, 376, 403
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HinfI	GANTC	1 cut(s)	512
HpaII	CCGG	2 cut(s)	444, 501
HphI	GGTGA	2 cut(s)	332, 392
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	5 cut(s)	48, 114, 223, 250, 415
Hpy188III	TCNNGA	4 cut(s)	151, 178, 194, 501
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	1 cut(s)	368
HpyCH4III	ACNGT	4 cut(s)	100, 366, 380, 461
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	3 cut(s)	4, 9, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	3 cut(s)	192, 485, 519
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	322, 376, 403
Kpn2I	TCCGGA	1 cut(s)	500
Kzo9I	GATC	7 cut(s)	43, 117, 147, 245, 263, 311, 337
LmnI	GCTCC	2 cut(s)	64, 503
LpnPI	CCDG	9 cut(s)	10, 37, 92, 140, 179, 191, 285, 457, 514
MabI	ACCWGGT	1 cut(s)	23
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	162
MalI	GATC	7 cut(s)	45, 119, 149, 247, 265, 313, 339
MboI	GATC	7 cut(s)	43, 117, 147, 245, 263, 311, 337
MboII	GAAGA	4 cut(s)	217, 220, 347, 415
MflI	RGATCY	2 cut(s)	263, 311
MhlI	GDGCHC	3 cut(s)	193, 237, 486
MluCI	AATT	2 cut(s)	54, 277
MnlI	CCTC	7 cut(s)	108, 323, 376, 409, 413, 500, 508
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	500
MseI	TTAA	3 cut(s)	87, 270, 351
MspA1I	CMGCKG	1 cut(s)	130
MspI	CCGG	2 cut(s)	444, 501
MspR9I	CCNGG	1 cut(s)	25
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	7 cut(s)	43, 117, 147, 245, 263, 311, 337
NlaIII	CATG	3 cut(s)	322, 376, 403
NlaIV	GGNNCC	3 cut(s)	176, 265, 313
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	512
PkrI	GCNGC	1 cut(s)	452
PshBI	ATTAAT	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	3 cut(s)	176, 265, 313
PsrI	GAACNNNNNNTAC	2 cut(s)	93, 125
PsuI	RGATCY	2 cut(s)	263, 311
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	2 cut(s)	22, 140
RsaNI	GTAC	2 cut(s)	21, 139
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	87, 270, 351
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	7 cut(s)	43, 117, 147, 245, 263, 311, 337
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	3 cut(s)	193, 237, 486
SexAI	ACCWGGT	1 cut(s)	23
SfcI	CTRYAG	2 cut(s)	39, 99
SmlI	CTYRAG	2 cut(s)	59, 479
SmoI	CTYRAG	2 cut(s)	59, 479
SpeI	ACTAGT	1 cut(s)	290
Sse9I	AATT	2 cut(s)	54, 277
SsiI	CCGC	1 cut(s)	450
SspMI	CTAG	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	23
TaaI	ACNGT	4 cut(s)	100, 366, 380, 461
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	54, 277
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	512
Tru1I	TTAA	3 cut(s)	87, 270, 351
Tru9I	TTAA	3 cut(s)	87, 270, 351
TscAI	CASTG	1 cut(s)	369
TspDTI	ATGAA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	369
VspI	ATTAAT	1 cut(s)	270
XapI	RAATTY	1 cut(s)	54
XspI	CTAG	1 cut(s)	291
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.