Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Forward (+)

486142 .. 500504

Gene Structure 14363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00156650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCATTGCAAGCAAAGTAAAACCAAGTGGCTTCCTACTACGGATCAGATAAGAATCCTCAAGGAGCTTTACTATGACAAAGGAGTTAAGTCCCCCACCGTAGAGCAGGTCCGGAGGATCACTCTCCAACTAAAATGGTATGGACAGATCGAGAACAAGAACGTCTTTTATTGGTTCCAGAATCAAAGGGCTCGGGAGAAGCTGAAAAAGAAGAATCTCACTTCGGATGTTCAAGTGCCCAAGCAAAGACCAGGGCTTGTTGGTGGATCCATTAACCTCAATTTTGGGTCAACTAGTTCTGCTGATGTTGGTGGATCCATCATGGAACAACGAGGAGAAGATCACCAGGAGATTAAAACCCTTCCACCGTTTCCCATGCACAAAATTGGGAAAGTATTTCTTCAAGTATCTCCCATTGATAGGGTTATGATGGACATCTCCATCCAGGTCCTTGAGATGAAAAGCTCATTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

158

Amino Acids

18.28

Weight (kDa)

9.8

Isoelectric Point (pI)

53.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	7 - 67	8.8e-11	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	97
AccIII	TCCGGA	1 cut(s)	111
AclWI	GGATC	6 cut(s)	51, 125, 261, 274, 309, 322
AfiI	CCNNNNNNNGG	1 cut(s)	420
AgsI	TTSAA	2 cut(s)	233, 404
AhlI	ACTAGT	1 cut(s)	293
AjnI	CCWGG	3 cut(s)	250, 345, 444
AluBI	AGCT	3 cut(s)	67, 202, 465
AluI	AGCT	3 cut(s)	67, 202, 465
AlwI	GGATC	6 cut(s)	51, 125, 261, 274, 309, 322
Ama87I	CYCGRG	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	109, 448
AsuHPI	GGTGA	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	2 cut(s)	109, 448
BaeGI	GKGCMC	1 cut(s)	240
BamHI	GGATCC	2 cut(s)	266, 314
BanII	GRGCYC	1 cut(s)	193
BccI	CCATC	3 cut(s)	326, 424, 449
BciT130I	CCWGG	3 cut(s)	252, 347, 446
BcuI	ACTAGT	1 cut(s)	293
BfaI	CTAG	1 cut(s)	294
BfuAI	ACCTGC	1 cut(s)	97
Bme1390I	CCNGG	3 cut(s)	252, 347, 446
Bme18I	GGWCC	2 cut(s)	109, 448
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	109, 448
BmiI	GGNNCC	3 cut(s)	176, 268, 316
BmrFI	CCNGG	3 cut(s)	252, 347, 446
BplI	GAGNNNNNCTC	2 cut(s)	106, 138
BpuEI	CTTGAG	2 cut(s)	44, 473
BsaBI	GATNNNNATC	2 cut(s)	53, 434
BsaJI	CCNNGG	1 cut(s)	251
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	420
Bse3DI	GCAATG	1 cut(s)	4
Bse8I	GATNNNNATC	2 cut(s)	53, 434
BseAI	TCCGGA	1 cut(s)	111
BseBI	CCWGG	3 cut(s)	252, 347, 446
BseDI	CCNNGG	1 cut(s)	251
BseGI	GGATG	2 cut(s)	232, 441
BseJI	GATNNNNATC	2 cut(s)	53, 434
BseLI	CCNNNNNNNGG	1 cut(s)	420
BseMI	GCAATG	1 cut(s)	4
BseRI	GAGGAG	1 cut(s)	348
BseSI	GKGCMC	1 cut(s)	240
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	420
BsmFI	GGGAC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	2 cut(s)	193, 240
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	6 cut(s)	43, 117, 147, 266, 314, 340
BspEI	TCCGGA	1 cut(s)	111
BspLI	GGNNCC	3 cut(s)	176, 268, 316
BspMI	ACCTGC	1 cut(s)	97
BspPI	GGATC	6 cut(s)	51, 125, 261, 274, 309, 322
BsrDI	GCAATG	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	6 cut(s)	43, 117, 147, 266, 314, 340
Bst2UI	CCWGG	3 cut(s)	252, 347, 446
Bst4CI	ACNGT	2 cut(s)	100, 369
BstC8I	GCNNGC	1 cut(s)	11
BstF5I	GGATG	2 cut(s)	232, 441
BstKTI	GATC	6 cut(s)	46, 120, 150, 269, 317, 343
BstMBI	GATC	6 cut(s)	43, 117, 147, 266, 314, 340
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	3 cut(s)	252, 347, 446
BstSCI	CCNGG	3 cut(s)	250, 345, 444
BstSLI	GKGCMC	1 cut(s)	240
BstX2I	RGATCY	2 cut(s)	266, 314
BstYI	RGATCY	2 cut(s)	266, 314
BtsCI	GGATG	2 cut(s)	232, 441
BveI	ACCTGC	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	109, 448
CviAII	CATG	2 cut(s)	322, 376
CviJI	RGCY	6 cut(s)	31, 67, 191, 202, 256, 465
CviKI_1	RGCY	6 cut(s)	31, 67, 191, 202, 256, 465
DpnI	GATC	6 cut(s)	45, 119, 149, 268, 316, 342
DpnII	GATC	6 cut(s)	43, 117, 147, 266, 314, 340
Eco24I	GRGCYC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	109, 448
Eco88I	CYCGRG	1 cut(s)	192
EcoO109I	RGGNCCY	1 cut(s)	448
EcoRII	CCWGG	3 cut(s)	250, 345, 444
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	193
FaeI	CATG	2 cut(s)	325, 379
FaiI	YATR	5 cut(s)	75, 141, 323, 377, 428
FalI	AAGNNNNNCTT	4 cut(s)	149, 181, 384, 416
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	2 cut(s)	321, 375
FokI	GGATG	2 cut(s)	239, 428
FriOI	GRGCYC	1 cut(s)	193
FspBI	CTAG	1 cut(s)	294
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	2 cut(s)	325, 379
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
HinfI	GANTC	3 cut(s)	54, 181, 214
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	2 cut(s)	48, 226
Hpy188III	TCNNGA	4 cut(s)	112, 151, 178, 194
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	2 cut(s)	100, 369
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	3 cut(s)	4, 9, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	325, 379
Kpn2I	TCCGGA	1 cut(s)	111
Kzo9I	GATC	6 cut(s)	43, 117, 147, 266, 314, 340
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	9 cut(s)	92, 125, 191, 237, 264, 332, 359, 431, 458
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	162
MalI	GATC	6 cut(s)	45, 119, 149, 268, 316, 342
MboI	GATC	6 cut(s)	43, 117, 147, 266, 314, 340
MboII	GAAGA	3 cut(s)	223, 350, 392
MflI	RGATCY	2 cut(s)	266, 314
MhlI	GDGCHC	2 cut(s)	193, 240
MluCI	AATT	2 cut(s)	280, 384
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	4 cut(s)	68, 108, 287, 326
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	111
MseI	TTAA	3 cut(s)	87, 273, 354
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	3 cut(s)	252, 347, 446
MvaI	CCWGG	3 cut(s)	252, 347, 446
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	6 cut(s)	43, 117, 147, 266, 314, 340
NlaIII	CATG	2 cut(s)	325, 379
NlaIV	GGNNCC	3 cut(s)	176, 268, 316
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	3 cut(s)	54, 181, 214
PpuMI	RGGWCCY	1 cut(s)	448
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	3 cut(s)	250, 345, 444
PspGI	CCWGG	3 cut(s)	250, 345, 444
PspN4I	GGNNCC	3 cut(s)	176, 268, 316
PspPI	GGNCC	2 cut(s)	109, 448
PspPPI	RGGWCCY	1 cut(s)	448
PsuI	RGATCY	2 cut(s)	266, 314
SaqAI	TTAA	3 cut(s)	87, 273, 354
Sau3AI	GATC	6 cut(s)	43, 117, 147, 266, 314, 340
Sau96I	GGNCC	2 cut(s)	109, 448
ScrFI	CCNGG	3 cut(s)	252, 347, 446
SduI	GDGCHC	2 cut(s)	193, 240
SetI	ASST	7 cut(s)	69, 111, 165, 204, 279, 450, 467
SinI	GGWCC	2 cut(s)	109, 448
SmlI	CTYRAG	2 cut(s)	59, 452
SmoI	CTYRAG	2 cut(s)	59, 452
SpeI	ACTAGT	1 cut(s)	293
Sse9I	AATT	2 cut(s)	280, 384
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	3 cut(s)	250, 345, 444
TaaI	ACNGT	2 cut(s)	100, 369
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	280, 384
TfiI	GAWTC	3 cut(s)	54, 181, 214
Tru1I	TTAA	3 cut(s)	87, 273, 354
Tru9I	TTAA	3 cut(s)	87, 273, 354
TspDTI	ATGAA	1 cut(s)	473
TspGWI	ACGGA	1 cut(s)	56
VpaK11BI	GGWCC	2 cut(s)	109, 448
XspI	CTAG	1 cut(s)	294
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.