Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 24 - 84 | 8.5e-08 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 320 |
| AccB1I | GGYRCC | 1 cut(s) | 320 |
| AccII | CGCG | 1 cut(s) | 636 |
| AciI | CCGC | 3 cut(s) | 534, 564, 634 |
| AclWI | GGATC | 5 cut(s) | 173, 199, 348, 367, 448 |
| AcuI | CTGAAG | 1 cut(s) | 369 |
| AfaI | GTAC | 3 cut(s) | 70, 188, 322 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 558 |
| AflIII | ACRYGT | 1 cut(s) | 640 |
| AgsI | TTSAA | 1 cut(s) | 461 |
| AhlI | ACTAGT | 1 cut(s) | 515 |
| AjnI | CCWGG | 1 cut(s) | 71 |
| AluBI | AGCT | 5 cut(s) | 115, 389, 543, 598, 670 |
| AluI | AGCT | 5 cut(s) | 115, 389, 543, 598, 670 |
| Alw26I | GTCTC | 1 cut(s) | 656 |
| AlwI | GGATC | 5 cut(s) | 173, 199, 348, 367, 448 |
| Ama87I | CYCGRG | 1 cut(s) | 240 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 465 |
| Asp718I | GGTACC | 1 cut(s) | 320 |
| AspS9I | GGNCC | 1 cut(s) | 138 |
| AsuC2I | CCSGG | 2 cut(s) | 16, 55 |
| AsuHPI | GGTGA | 1 cut(s) | 587 |
| AvaI | CYCGRG | 1 cut(s) | 240 |
| AvaII | GGWCC | 1 cut(s) | 138 |
| AxyI | CCTNAGG | 1 cut(s) | 336 |
| BanI | GGYRCC | 1 cut(s) | 320 |
| BanII | GRGCYC | 1 cut(s) | 241 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 338, 370 |
| BbsI | GAAGAC | 1 cut(s) | 518 |
| BccI | CCATC | 4 cut(s) | 26, 177, 412, 552 |
| BciT130I | CCWGG | 1 cut(s) | 73 |
| BcnI | CCSGG | 2 cut(s) | 16, 55 |
| BcoDI | GTCTC | 1 cut(s) | 656 |
| BcuI | ACTAGT | 1 cut(s) | 515 |
| BfaI | CTAG | 1 cut(s) | 516 |
| BfmI | CTRYAG | 3 cut(s) | 87, 147, 538 |
| BisI | GCNGC | 2 cut(s) | 535, 565 |
| BlpI | GCTNAGC | 1 cut(s) | 599 |
| BlsI | GCNGC | 2 cut(s) | 536, 566 |
| Bme1390I | CCNGG | 3 cut(s) | 16, 55, 73 |
| Bme18I | GGWCC | 1 cut(s) | 138 |
| BmeT110I | CYCGRG | 1 cut(s) | 240 |
| BmgT120I | GGNCC | 1 cut(s) | 138 |
| BmiI | GGNNCC | 4 cut(s) | 6, 140, 230, 322 |
| BmrFI | CCNGG | 3 cut(s) | 16, 55, 73 |
| BmsI | GCATC | 2 cut(s) | 276, 377 |
| BpiI | GAAGAC | 1 cut(s) | 518 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 599 |
| BpuEI | CTTGAG | 2 cut(s) | 92, 614 |
| BpuMI | CCSGG | 2 cut(s) | 16, 55 |
| BsaBI | GATNNNNATC | 1 cut(s) | 101 |
| BsaJI | CCNNGG | 2 cut(s) | 27, 522 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 558 |
| Bse21I | CCTNAGG | 1 cut(s) | 336 |
| Bse8I | GATNNNNATC | 1 cut(s) | 101 |
| BseBI | CCWGG | 1 cut(s) | 73 |
| BseDI | CCNNGG | 2 cut(s) | 27, 522 |
| BseGI | GGATG | 2 cut(s) | 37, 563 |
| BseJI | GATNNNNATC | 1 cut(s) | 101 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 558 |
| BseMII | CTCAG | 2 cut(s) | 170, 327 |
| Bsh1236I | CGCG | 1 cut(s) | 636 |
| Bsh1285I | CGRYCG | 1 cut(s) | 198 |
| BshNI | GGYRCC | 1 cut(s) | 320 |
| BsiEI | CGRYCG | 1 cut(s) | 198 |
| BsiHKCI | CYCGRG | 1 cut(s) | 240 |
| BsiSI | CCGG | 2 cut(s) | 16, 54 |
| BslFI | GGGAC | 1 cut(s) | 124 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 558 |
| BsmAI | GTCTC | 1 cut(s) | 656 |
| BsmFI | GGGAC | 1 cut(s) | 124 |
| BsoBI | CYCGRG | 1 cut(s) | 240 |
| Bsp1286I | GDGCHC | 1 cut(s) | 241 |
| Bsp143I | GATC | 6 cut(s) | 91, 165, 191, 340, 359, 440 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 599 |
| BspACI | CCGC | 3 cut(s) | 534, 564, 634 |
| BspCNI | CTCAG | 2 cut(s) | 171, 328 |
| BspFNI | CGCG | 1 cut(s) | 636 |
| BspLI | GGNNCC | 4 cut(s) | 6, 140, 230, 322 |
| BspPI | GGATC | 5 cut(s) | 173, 199, 348, 367, 448 |
| BspQI | GCTCTTC | 1 cut(s) | 56 |
| BspT107I | GGYRCC | 1 cut(s) | 320 |
| BssECI | CCNNGG | 2 cut(s) | 27, 522 |
| BssMI | GATC | 6 cut(s) | 91, 165, 191, 340, 359, 440 |
| Bst2UI | CCWGG | 1 cut(s) | 73 |
| Bst4CI | ACNGT | 2 cut(s) | 148, 575 |
| Bst6I | CTCTTC | 3 cut(s) | 56, 251, 654 |
| BstDEI | CTNAG | 3 cut(s) | 179, 336, 599 |
| BstF5I | GGATG | 2 cut(s) | 37, 563 |
| BstFNI | CGCG | 1 cut(s) | 636 |
| BstKTI | GATC | 6 cut(s) | 94, 168, 194, 343, 362, 443 |
| BstMAI | GTCTC | 1 cut(s) | 656 |
| BstMBI | GATC | 6 cut(s) | 91, 165, 191, 340, 359, 440 |
| BstMCI | CGRYCG | 1 cut(s) | 198 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 540 |
| BstNI | CCWGG | 1 cut(s) | 73 |
| BstNSI | RCATGY | 1 cut(s) | 275 |
| BstSCI | CCNGG | 3 cut(s) | 14, 53, 71 |
| BstSFI | CTRYAG | 3 cut(s) | 87, 147, 538 |
| BstUI | CGCG | 1 cut(s) | 636 |
| BstV2I | GAAGAC | 1 cut(s) | 518 |
| BstX2I | RGATCY | 3 cut(s) | 165, 359, 440 |
| BstYI | RGATCY | 3 cut(s) | 165, 359, 440 |
| Bsu36I | CCTNAGG | 1 cut(s) | 336 |
| BtsCI | GGATG | 2 cut(s) | 37, 563 |
| Cfr13I | GGNCC | 1 cut(s) | 138 |
| CsiI | ACCWGGT | 1 cut(s) | 71 |
| Csp6I | GTAC | 3 cut(s) | 69, 187, 321 |
| CviAII | CATG | 4 cut(s) | 272, 278, 481, 508 |
| CviQI | GTAC | 3 cut(s) | 69, 187, 321 |
| DdeI | CTNAG | 3 cut(s) | 179, 336, 599 |
| DpnI | GATC | 6 cut(s) | 93, 167, 193, 342, 361, 442 |
| DpnII | GATC | 6 cut(s) | 91, 165, 191, 340, 359, 440 |
| DraI | TTTAAA | 1 cut(s) | 409 |
| Eam1104I | CTCTTC | 3 cut(s) | 56, 251, 654 |
| EarI | CTCTTC | 3 cut(s) | 56, 251, 654 |
| Eco24I | GRGCYC | 1 cut(s) | 241 |
| Eco47I | GGWCC | 1 cut(s) | 138 |
| Eco57I | CTGAAG | 1 cut(s) | 369 |
| Eco81I | CCTNAGG | 1 cut(s) | 336 |
| Eco88I | CYCGRG | 1 cut(s) | 240 |
| EcoO109I | RGGNCCY | 1 cut(s) | 138 |
| EcoRII | CCWGG | 1 cut(s) | 71 |
| EcoT22I | ATGCAT | 1 cut(s) | 486 |
| EcoT38I | GRGCYC | 1 cut(s) | 241 |
| FaeI | CATG | 4 cut(s) | 275, 281, 484, 511 |
| FaiI | YATR | 9 cut(s) | 273, 279, 348, 429, 438, 446, 482, 486, 509 |
| FaqI | GGGAC | 1 cut(s) | 124 |
| FatI | CATG | 4 cut(s) | 271, 277, 480, 507 |
| FauI | CCCGC | 1 cut(s) | 641 |
| Fnu4HI | GCNGC | 2 cut(s) | 535, 565 |
| FokI | GGATG | 2 cut(s) | 44, 570 |
| FriOI | GRGCYC | 1 cut(s) | 241 |
| Fsp4HI | GCNGC | 2 cut(s) | 535, 565 |
| FspBI | CTAG | 1 cut(s) | 516 |
| GluI | GCNGC | 2 cut(s) | 535, 565 |
| HapII | CCGG | 2 cut(s) | 16, 54 |
| Hin1II | CATG | 4 cut(s) | 275, 281, 484, 511 |
| HinfI | GANTC | 5 cut(s) | 79, 102, 157, 578, 617 |
| HpaII | CCGG | 2 cut(s) | 16, 54 |
| HphI | GGTGA | 1 cut(s) | 587 |
| Hpy188I | TCNGA | 4 cut(s) | 96, 162, 359, 523 |
| Hpy188III | TCNNGA | 2 cut(s) | 199, 242 |
| HpyAV | CCTTC | 1 cut(s) | 476 |
| HpyCH4III | ACNGT | 2 cut(s) | 148, 575 |
| HpyCH4IV | ACGT | 2 cut(s) | 210, 640 |
| HpyCH4V | TGCA | 3 cut(s) | 289, 368, 484 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 540 |
| HpyF3I | CTNAG | 3 cut(s) | 179, 336, 599 |
| HpySE526I | ACGT | 2 cut(s) | 210, 640 |
| Hsp92II | CATG | 4 cut(s) | 275, 281, 484, 511 |
| KpnI | GGTACC | 1 cut(s) | 324 |
| Kzo9I | GATC | 6 cut(s) | 91, 165, 191, 340, 359, 440 |
| LguI | GCTCTTC | 1 cut(s) | 56 |
| LmnI | GCTCC | 1 cut(s) | 112 |
| LpnPI | CCDG | 8 cut(s) | 29, 58, 67, 85, 191, 282, 348, 565 |
| LweI | GCATC | 2 cut(s) | 276, 377 |
| MabI | ACCWGGT | 1 cut(s) | 71 |
| MaeI | CTAG | 1 cut(s) | 516 |
| MaeII | ACGT | 2 cut(s) | 210, 640 |
| MaeIII | GTNAC | 1 cut(s) | 575 |
| MalI | GATC | 6 cut(s) | 93, 167, 193, 342, 361, 442 |
| MboI | GATC | 6 cut(s) | 91, 165, 191, 340, 359, 440 |
| MboII | GAAGA | 7 cut(s) | 73, 265, 268, 354, 375, 523, 671 |
| MfeI | CAATTG | 1 cut(s) | 325 |
| MflI | RGATCY | 3 cut(s) | 165, 359, 440 |
| MhlI | GDGCHC | 1 cut(s) | 241 |
| MluCI | AATT | 1 cut(s) | 325 |
| MlyI | GAGTC | 2 cut(s) | 572, 611 |
| Mph1103I | ATGCAT | 1 cut(s) | 486 |
| MroXI | GAANNNNTTC | 1 cut(s) | 465 |
| MseI | TTAA | 2 cut(s) | 351, 408 |
| MslI | CAYNNNNRTG | 1 cut(s) | 276 |
| MspA1I | CMGCKG | 1 cut(s) | 389 |
| MspI | CCGG | 2 cut(s) | 16, 54 |
| MspR9I | CCNGG | 3 cut(s) | 16, 55, 73 |
| MunI | CAATTG | 1 cut(s) | 325 |
| MvaI | CCWGG | 1 cut(s) | 73 |
| MvnI | CGCG | 1 cut(s) | 636 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 540 |
| NciI | CCSGG | 2 cut(s) | 16, 55 |
| NdeII | GATC | 6 cut(s) | 91, 165, 191, 340, 359, 440 |
| NlaIII | CATG | 4 cut(s) | 275, 281, 484, 511 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 140, 230, 322 |
| NmuCI | GTSAC | 1 cut(s) | 575 |
| NsiI | ATGCAT | 1 cut(s) | 486 |
| NspI | RCATGY | 1 cut(s) | 275 |
| PciSI | GCTCTTC | 1 cut(s) | 56 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 195 |
| PdmI | GAANNNNTTC | 1 cut(s) | 465 |
| PfeI | GAWTC | 3 cut(s) | 79, 102, 157 |
| PkrI | GCNGC | 2 cut(s) | 536, 566 |
| PleI | GAGTC | 2 cut(s) | 572, 611 |
| PpsI | GAGTC | 2 cut(s) | 572, 611 |
| PpuMI | RGGWCCY | 1 cut(s) | 138 |
| Psp5II | RGGWCCY | 1 cut(s) | 138 |
| Psp6I | CCWGG | 1 cut(s) | 71 |
| PspGI | CCWGG | 1 cut(s) | 71 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 140, 230, 322 |
| PspPI | GGNCC | 1 cut(s) | 138 |
| PspPPI | RGGWCCY | 1 cut(s) | 138 |
| PsuI | RGATCY | 3 cut(s) | 165, 359, 440 |
| PvuII | CAGCTG | 1 cut(s) | 389 |
| RsaI | GTAC | 3 cut(s) | 70, 188, 322 |
| RsaNI | GTAC | 3 cut(s) | 69, 187, 321 |
| RseI | CAYNNNNRTG | 1 cut(s) | 276 |
| SapI | GCTCTTC | 1 cut(s) | 56 |
| SaqAI | TTAA | 2 cut(s) | 351, 408 |
| SatI | GCNGC | 2 cut(s) | 535, 565 |
| Sau3AI | GATC | 6 cut(s) | 91, 165, 191, 340, 359, 440 |
| Sau96I | GGNCC | 1 cut(s) | 138 |
| SchI | GAGTC | 2 cut(s) | 572, 611 |
| ScrFI | CCNGG | 3 cut(s) | 16, 55, 73 |
| SduI | GDGCHC | 1 cut(s) | 241 |
| SexAI | ACCWGGT | 1 cut(s) | 71 |
| SfaNI | GCATC | 2 cut(s) | 276, 377 |
| SfcI | CTRYAG | 3 cut(s) | 87, 147, 538 |
| SinI | GGWCC | 1 cut(s) | 138 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 276 |
| SmlI | CTYRAG | 2 cut(s) | 107, 593 |
| SmoI | CTYRAG | 2 cut(s) | 107, 593 |
| SpeI | ACTAGT | 1 cut(s) | 515 |
| Sse9I | AATT | 1 cut(s) | 325 |
| SsiI | CCGC | 3 cut(s) | 534, 564, 634 |
| SspMI | CTAG | 1 cut(s) | 516 |
| StyD4I | CCNGG | 3 cut(s) | 14, 53, 71 |
| TaaI | ACNGT | 2 cut(s) | 148, 575 |
| TaiI | ACGT | 2 cut(s) | 213, 643 |
| TaqI | TCGA | 2 cut(s) | 198, 620 |
| TaqII | GACCGA | 1 cut(s) | 184 |
| TasI | AATT | 1 cut(s) | 325 |
| TauI | GCSGC | 2 cut(s) | 537, 567 |
| TfiI | GAWTC | 3 cut(s) | 79, 102, 157 |
| Tru1I | TTAA | 2 cut(s) | 351, 408 |
| Tru9I | TTAA | 2 cut(s) | 351, 408 |
| TseFI | GTSAC | 1 cut(s) | 575 |
| Tsp45I | GTSAC | 1 cut(s) | 575 |
| TspDTI | ATGAA | 3 cut(s) | 266, 461, 524 |
| TspGWI | ACGGA | 2 cut(s) | 204, 467 |
| VpaK11BI | GGWCC | 1 cut(s) | 138 |
| XceI | RCATGY | 1 cut(s) | 275 |
| XmnI | GAANNNNTTC | 1 cut(s) | 465 |
| XspI | CTAG | 1 cut(s) | 516 |
| Zsp2I | ATGCAT | 1 cut(s) | 486 |