RchiOBHm_Chr1g0360601

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
52405090 .. 52405764
675 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58557

Sequence Viewer

Length: 675 bp
ATGGAACCACAAACCCGGCAACCAACCGAGGATGGAGGAAGCAACAAAGTAGCCGGGAGGAAGAGCAGTACCAGGTGGATTCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTGACTACAACAAGGGAGTTAGGTCCCCAACTGTAGAGCAGATTCAGAGGATCTATCTCCACCTGAGATGGTACGGATCGGTCGAGAGCAAGAACGTCTATTATTGGTTTAGGAACCAAAGGGCTCGGGAGAAACAGAAGAAGAGTTCTACTTCGCATGTTCATGTGCCGATGCAAAAATCAGGGCTTGTTAGTAATGGTAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCGGATCTTCTGCATCTGCTTCTGTTTCTTCAGCTGATGTGATGATTGCTTTTAAAGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAATACGGAGATTGAAACCCTTCCTCTGTTCCCCATGCATAATGAGGACATCTTTGGCAACATGAAGACTAGTTCCGAGGGTGGTGGCGGCTACAGCTACTACTCCTGTGGATGGGGCGGCTACAACGGTGACTCTCACATTTCCCTTGAGCTTAGCCTCAACTCTTACGACTCGACCCTATTTTCCCGCGAACGTGTTTTCTCTGTGAGAGAAGAGACAAAGCTGTAA

Protein Analysis

224

Amino Acids

25.27

Weight (kDa)

8.82

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 24 - 84 8.5e-08 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17950
fragaria_vesca FvH4_1g11910 FvH4_3g04400
malus_domestica MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica Prupe.7G167700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 320
AccII CGCG 1 cut(s) 636
AciI CCGC 3 cut(s) 534, 564, 634
AclWI GGATC 5 cut(s) 173, 199, 348, 367, 448
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 3 cut(s) 70, 188, 322
AfiI CCNNNNNNNGG 1 cut(s) 558
AflIII ACRYGT 1 cut(s) 640
AgsI TTSAA 1 cut(s) 461
AhlI ACTAGT 1 cut(s) 515
AjnI CCWGG 1 cut(s) 71
AluBI AGCT 5 cut(s) 115, 389, 543, 598, 670
AluI AGCT 5 cut(s) 115, 389, 543, 598, 670
Alw26I GTCTC 1 cut(s) 656
AlwI GGATC 5 cut(s) 173, 199, 348, 367, 448
Ama87I CYCGRG 1 cut(s) 240
Asp700I GAANNNNTTC 1 cut(s) 465
Asp718I GGTACC 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 138
AsuC2I CCSGG 2 cut(s) 16, 55
AsuHPI GGTGA 1 cut(s) 587
AvaI CYCGRG 1 cut(s) 240
AvaII GGWCC 1 cut(s) 138
AxyI CCTNAGG 1 cut(s) 336
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 241
BarI GAAGNNNNNNTAC 2 cut(s) 338, 370
BbsI GAAGAC 1 cut(s) 518
BccI CCATC 4 cut(s) 26, 177, 412, 552
BciT130I CCWGG 1 cut(s) 73
BcnI CCSGG 2 cut(s) 16, 55
BcoDI GTCTC 1 cut(s) 656
BcuI ACTAGT 1 cut(s) 515
BfaI CTAG 1 cut(s) 516
BfmI CTRYAG 3 cut(s) 87, 147, 538
BisI GCNGC 2 cut(s) 535, 565
BlpI GCTNAGC 1 cut(s) 599
BlsI GCNGC 2 cut(s) 536, 566
Bme1390I CCNGG 3 cut(s) 16, 55, 73
Bme18I GGWCC 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 240
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 4 cut(s) 6, 140, 230, 322
BmrFI CCNGG 3 cut(s) 16, 55, 73
BmsI GCATC 2 cut(s) 276, 377
BpiI GAAGAC 1 cut(s) 518
Bpu1102I GCTNAGC 1 cut(s) 599
BpuEI CTTGAG 2 cut(s) 92, 614
BpuMI CCSGG 2 cut(s) 16, 55
BsaBI GATNNNNATC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 27, 522
Bsc4I CCNNNNNNNGG 1 cut(s) 558
Bse21I CCTNAGG 1 cut(s) 336
Bse8I GATNNNNATC 1 cut(s) 101
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 2 cut(s) 27, 522
BseGI GGATG 2 cut(s) 37, 563
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 558
BseMII CTCAG 2 cut(s) 170, 327
Bsh1236I CGCG 1 cut(s) 636
Bsh1285I CGRYCG 1 cut(s) 198
BshNI GGYRCC 1 cut(s) 320
BsiEI CGRYCG 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 240
BsiSI CCGG 2 cut(s) 16, 54
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 558
BsmAI GTCTC 1 cut(s) 656
BsmFI GGGAC 1 cut(s) 124
BsoBI CYCGRG 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 6 cut(s) 91, 165, 191, 340, 359, 440
Bsp1720I GCTNAGC 1 cut(s) 599
BspACI CCGC 3 cut(s) 534, 564, 634
BspCNI CTCAG 2 cut(s) 171, 328
BspFNI CGCG 1 cut(s) 636
BspLI GGNNCC 4 cut(s) 6, 140, 230, 322
BspPI GGATC 5 cut(s) 173, 199, 348, 367, 448
BspQI GCTCTTC 1 cut(s) 56
BspT107I GGYRCC 1 cut(s) 320
BssECI CCNNGG 2 cut(s) 27, 522
BssMI GATC 6 cut(s) 91, 165, 191, 340, 359, 440
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 2 cut(s) 148, 575
Bst6I CTCTTC 3 cut(s) 56, 251, 654
BstDEI CTNAG 3 cut(s) 179, 336, 599
BstF5I GGATG 2 cut(s) 37, 563
BstFNI CGCG 1 cut(s) 636
BstKTI GATC 6 cut(s) 94, 168, 194, 343, 362, 443
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 6 cut(s) 91, 165, 191, 340, 359, 440
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 1 cut(s) 540
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 3 cut(s) 14, 53, 71
BstSFI CTRYAG 3 cut(s) 87, 147, 538
BstUI CGCG 1 cut(s) 636
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 3 cut(s) 165, 359, 440
BstYI RGATCY 3 cut(s) 165, 359, 440
Bsu36I CCTNAGG 1 cut(s) 336
BtsCI GGATG 2 cut(s) 37, 563
Cfr13I GGNCC 1 cut(s) 138
CsiI ACCWGGT 1 cut(s) 71
Csp6I GTAC 3 cut(s) 69, 187, 321
CviAII CATG 4 cut(s) 272, 278, 481, 508
CviQI GTAC 3 cut(s) 69, 187, 321
DdeI CTNAG 3 cut(s) 179, 336, 599
DpnI GATC 6 cut(s) 93, 167, 193, 342, 361, 442
DpnII GATC 6 cut(s) 91, 165, 191, 340, 359, 440
DraI TTTAAA 1 cut(s) 409
Eam1104I CTCTTC 3 cut(s) 56, 251, 654
EarI CTCTTC 3 cut(s) 56, 251, 654
Eco24I GRGCYC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 138
Eco57I CTGAAG 1 cut(s) 369
Eco81I CCTNAGG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 240
EcoO109I RGGNCCY 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 71
EcoT22I ATGCAT 1 cut(s) 486
EcoT38I GRGCYC 1 cut(s) 241
FaeI CATG 4 cut(s) 275, 281, 484, 511
FaiI YATR 9 cut(s) 273, 279, 348, 429, 438, 446, 482, 486, 509
FaqI GGGAC 1 cut(s) 124
FatI CATG 4 cut(s) 271, 277, 480, 507
FauI CCCGC 1 cut(s) 641
Fnu4HI GCNGC 2 cut(s) 535, 565
FokI GGATG 2 cut(s) 44, 570
FriOI GRGCYC 1 cut(s) 241
Fsp4HI GCNGC 2 cut(s) 535, 565
FspBI CTAG 1 cut(s) 516
GluI GCNGC 2 cut(s) 535, 565
HapII CCGG 2 cut(s) 16, 54
Hin1II CATG 4 cut(s) 275, 281, 484, 511
HinfI GANTC 5 cut(s) 79, 102, 157, 578, 617
HpaII CCGG 2 cut(s) 16, 54
HphI GGTGA 1 cut(s) 587
Hpy188I TCNGA 4 cut(s) 96, 162, 359, 523
Hpy188III TCNNGA 2 cut(s) 199, 242
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 2 cut(s) 148, 575
HpyCH4IV ACGT 2 cut(s) 210, 640
HpyCH4V TGCA 3 cut(s) 289, 368, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 540
HpyF3I CTNAG 3 cut(s) 179, 336, 599
HpySE526I ACGT 2 cut(s) 210, 640
Hsp92II CATG 4 cut(s) 275, 281, 484, 511
KpnI GGTACC 1 cut(s) 324
Kzo9I GATC 6 cut(s) 91, 165, 191, 340, 359, 440
LguI GCTCTTC 1 cut(s) 56
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 8 cut(s) 29, 58, 67, 85, 191, 282, 348, 565
LweI GCATC 2 cut(s) 276, 377
MabI ACCWGGT 1 cut(s) 71
MaeI CTAG 1 cut(s) 516
MaeII ACGT 2 cut(s) 210, 640
MaeIII GTNAC 1 cut(s) 575
MalI GATC 6 cut(s) 93, 167, 193, 342, 361, 442
MboI GATC 6 cut(s) 91, 165, 191, 340, 359, 440
MboII GAAGA 7 cut(s) 73, 265, 268, 354, 375, 523, 671
MfeI CAATTG 1 cut(s) 325
MflI RGATCY 3 cut(s) 165, 359, 440
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 1 cut(s) 325
MlyI GAGTC 2 cut(s) 572, 611
Mph1103I ATGCAT 1 cut(s) 486
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 2 cut(s) 351, 408
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 389
MspI CCGG 2 cut(s) 16, 54
MspR9I CCNGG 3 cut(s) 16, 55, 73
MunI CAATTG 1 cut(s) 325
MvaI CCWGG 1 cut(s) 73
MvnI CGCG 1 cut(s) 636
MwoI GCNNNNNNNGC 1 cut(s) 540
NciI CCSGG 2 cut(s) 16, 55
NdeII GATC 6 cut(s) 91, 165, 191, 340, 359, 440
NlaIII CATG 4 cut(s) 275, 281, 484, 511
NlaIV GGNNCC 4 cut(s) 6, 140, 230, 322
NmuCI GTSAC 1 cut(s) 575
NsiI ATGCAT 1 cut(s) 486
NspI RCATGY 1 cut(s) 275
PciSI GCTCTTC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 3 cut(s) 79, 102, 157
PkrI GCNGC 2 cut(s) 536, 566
PleI GAGTC 2 cut(s) 572, 611
PpsI GAGTC 2 cut(s) 572, 611
PpuMI RGGWCCY 1 cut(s) 138
Psp5II RGGWCCY 1 cut(s) 138
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 4 cut(s) 6, 140, 230, 322
PspPI GGNCC 1 cut(s) 138
PspPPI RGGWCCY 1 cut(s) 138
PsuI RGATCY 3 cut(s) 165, 359, 440
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 3 cut(s) 70, 188, 322
RsaNI GTAC 3 cut(s) 69, 187, 321
RseI CAYNNNNRTG 1 cut(s) 276
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 2 cut(s) 351, 408
SatI GCNGC 2 cut(s) 535, 565
Sau3AI GATC 6 cut(s) 91, 165, 191, 340, 359, 440
Sau96I GGNCC 1 cut(s) 138
SchI GAGTC 2 cut(s) 572, 611
ScrFI CCNGG 3 cut(s) 16, 55, 73
SduI GDGCHC 1 cut(s) 241
SexAI ACCWGGT 1 cut(s) 71
SfaNI GCATC 2 cut(s) 276, 377
SfcI CTRYAG 3 cut(s) 87, 147, 538
SinI GGWCC 1 cut(s) 138
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 2 cut(s) 107, 593
SmoI CTYRAG 2 cut(s) 107, 593
SpeI ACTAGT 1 cut(s) 515
Sse9I AATT 1 cut(s) 325
SsiI CCGC 3 cut(s) 534, 564, 634
SspMI CTAG 1 cut(s) 516
StyD4I CCNGG 3 cut(s) 14, 53, 71
TaaI ACNGT 2 cut(s) 148, 575
TaiI ACGT 2 cut(s) 213, 643
TaqI TCGA 2 cut(s) 198, 620
TaqII GACCGA 1 cut(s) 184
TasI AATT 1 cut(s) 325
TauI GCSGC 2 cut(s) 537, 567
TfiI GAWTC 3 cut(s) 79, 102, 157
Tru1I TTAA 2 cut(s) 351, 408
Tru9I TTAA 2 cut(s) 351, 408
TseFI GTSAC 1 cut(s) 575
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 3 cut(s) 266, 461, 524
TspGWI ACGGA 2 cut(s) 204, 467
VpaK11BI GGWCC 1 cut(s) 138
XceI RCATGY 1 cut(s) 275
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 1 cut(s) 516
Zsp2I ATGCAT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.