Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 166 |
| AclWI | GGATC | 5 cut(s) | 194, 330, 343, 377, 390 |
| AcuI | CTGAAG | 1 cut(s) | 293 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 448 |
| AgeI | ACCGGT | 1 cut(s) | 15 |
| AgsI | TTSAA | 1 cut(s) | 302 |
| AhlI | ACTAGT | 1 cut(s) | 361 |
| AjnI | CCWGG | 2 cut(s) | 92, 413 |
| AluBI | AGCT | 4 cut(s) | 136, 199, 271, 286 |
| AluI | AGCT | 4 cut(s) | 136, 199, 271, 286 |
| AlwI | GGATC | 5 cut(s) | 194, 330, 343, 377, 390 |
| Ama87I | CYCGRG | 1 cut(s) | 261 |
| AseI | ATTAAT | 1 cut(s) | 342 |
| AsiGI | ACCGGT | 1 cut(s) | 15 |
| AsuHPI | GGTGA | 3 cut(s) | 155, 403, 463 |
| AvaI | CYCGRG | 1 cut(s) | 261 |
| BaeGI | GKGCMC | 1 cut(s) | 309 |
| BamHI | GGATCC | 2 cut(s) | 335, 382 |
| BanII | GRGCYC | 1 cut(s) | 262 |
| BccI | CCATC | 2 cut(s) | 26, 394 |
| BciT130I | CCWGG | 2 cut(s) | 94, 415 |
| BciVI | GTATCC | 1 cut(s) | 30 |
| BcuI | ACTAGT | 1 cut(s) | 361 |
| BfaI | CTAG | 1 cut(s) | 362 |
| BfmI | CTRYAG | 2 cut(s) | 108, 168 |
| BfuAI | ACCTGC | 1 cut(s) | 166 |
| BfuI | GTATCC | 1 cut(s) | 30 |
| Bme1390I | CCNGG | 2 cut(s) | 94, 415 |
| BmeT110I | CYCGRG | 1 cut(s) | 261 |
| BmiI | GGNNCC | 4 cut(s) | 6, 245, 337, 384 |
| BmrFI | CCNGG | 2 cut(s) | 94, 415 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 175, 207 |
| BpmI | CTGGAG | 1 cut(s) | 179 |
| BpuEI | CTTGAG | 1 cut(s) | 113 |
| BsaBI | GATNNNNATC | 1 cut(s) | 122 |
| BsaJI | CCNNGG | 1 cut(s) | 27 |
| BsaWI | WCCGGW | 1 cut(s) | 15 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 448 |
| Bse118I | RCCGGY | 1 cut(s) | 15 |
| Bse3DI | GCAATG | 1 cut(s) | 73 |
| Bse8I | GATNNNNATC | 1 cut(s) | 122 |
| BseBI | CCWGG | 2 cut(s) | 94, 415 |
| BseDI | CCNNGG | 1 cut(s) | 27 |
| BseGI | GGATG | 2 cut(s) | 37, 301 |
| BseJI | GATNNNNATC | 1 cut(s) | 122 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 448 |
| BseMI | GCAATG | 1 cut(s) | 73 |
| BseRI | GAGGAG | 1 cut(s) | 416 |
| BseSI | GKGCMC | 1 cut(s) | 309 |
| BshTI | ACCGGT | 1 cut(s) | 15 |
| BsiHKCI | CYCGRG | 1 cut(s) | 261 |
| BsiSI | CCGG | 1 cut(s) | 16 |
| BslFI | GGGAC | 1 cut(s) | 145 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 448 |
| BsmFI | GGGAC | 1 cut(s) | 145 |
| BsoBI | CYCGRG | 1 cut(s) | 261 |
| Bsp1286I | GDGCHC | 2 cut(s) | 262, 309 |
| Bsp143I | GATC | 7 cut(s) | 112, 186, 216, 317, 335, 382, 408 |
| BspLI | GGNNCC | 4 cut(s) | 6, 245, 337, 384 |
| BspMI | ACCTGC | 1 cut(s) | 166 |
| BspPI | GGATC | 5 cut(s) | 194, 330, 343, 377, 390 |
| BsrDI | GCAATG | 1 cut(s) | 73 |
| BsrFI | RCCGGY | 1 cut(s) | 15 |
| BssAI | RCCGGY | 1 cut(s) | 15 |
| BssECI | CCNNGG | 1 cut(s) | 27 |
| BssMI | GATC | 7 cut(s) | 112, 186, 216, 317, 335, 382, 408 |
| Bst2UI | CCWGG | 2 cut(s) | 94, 415 |
| Bst4CI | ACNGT | 3 cut(s) | 143, 169, 451 |
| BstC8I | GCNNGC | 1 cut(s) | 80 |
| BstF5I | GGATG | 2 cut(s) | 37, 301 |
| BstKTI | GATC | 7 cut(s) | 115, 189, 219, 320, 338, 385, 411 |
| BstMBI | GATC | 7 cut(s) | 112, 186, 216, 317, 335, 382, 408 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 79 |
| BstNI | CCWGG | 2 cut(s) | 94, 415 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSCI | CCNGG | 2 cut(s) | 92, 413 |
| BstSFI | CTRYAG | 2 cut(s) | 108, 168 |
| BstSLI | GKGCMC | 1 cut(s) | 309 |
| BstX2I | RGATCY | 2 cut(s) | 335, 382 |
| BstYI | RGATCY | 2 cut(s) | 335, 382 |
| BsuI | GTATCC | 1 cut(s) | 30 |
| BtsCI | GGATG | 2 cut(s) | 37, 301 |
| BtsIMutI | CAGTG | 1 cut(s) | 165 |
| BveI | ACCTGC | 1 cut(s) | 166 |
| Cac8I | GCNNGC | 1 cut(s) | 80 |
| Cfr10I | RCCGGY | 1 cut(s) | 15 |
| CsiI | ACCWGGT | 1 cut(s) | 92 |
| CspAI | ACCGGT | 1 cut(s) | 15 |
| CviAII | CATG | 4 cut(s) | 70, 390, 444, 471 |
| CviJI | RGCY | 7 cut(s) | 100, 136, 199, 260, 271, 286, 325 |
| CviKI_1 | RGCY | 7 cut(s) | 100, 136, 199, 260, 271, 286, 325 |
| DpnI | GATC | 7 cut(s) | 114, 188, 218, 319, 337, 384, 410 |
| DpnII | GATC | 7 cut(s) | 112, 186, 216, 317, 335, 382, 408 |
| Eco24I | GRGCYC | 1 cut(s) | 262 |
| Eco57I | CTGAAG | 1 cut(s) | 293 |
| Eco88I | CYCGRG | 1 cut(s) | 261 |
| EcoRII | CCWGG | 2 cut(s) | 92, 413 |
| EcoT22I | ATGCAT | 1 cut(s) | 75 |
| EcoT38I | GRGCYC | 1 cut(s) | 262 |
| FaeI | CATG | 4 cut(s) | 73, 393, 447, 474 |
| FaiI | YATR | 5 cut(s) | 71, 210, 391, 445, 472 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 218, 250 |
| FaqI | GGGAC | 1 cut(s) | 145 |
| FatI | CATG | 4 cut(s) | 69, 389, 443, 470 |
| FokI | GGATG | 2 cut(s) | 44, 308 |
| FriOI | GRGCYC | 1 cut(s) | 262 |
| FspBI | CTAG | 1 cut(s) | 362 |
| GsuI | CTGGAG | 1 cut(s) | 179 |
| HapII | CCGG | 1 cut(s) | 16 |
| Hin1II | CATG | 4 cut(s) | 73, 393, 447, 474 |
| HincII | GTYRAC | 1 cut(s) | 359 |
| HindII | GTYRAC | 1 cut(s) | 359 |
| HinfI | GANTC | 2 cut(s) | 123, 250 |
| HpaII | CCGG | 1 cut(s) | 16 |
| HphI | GGTGA | 3 cut(s) | 155, 403, 463 |
| Hpy166II | GTNNAC | 1 cut(s) | 359 |
| Hpy188I | TCNGA | 3 cut(s) | 117, 183, 295 |
| Hpy188III | TCNNGA | 4 cut(s) | 55, 220, 247, 263 |
| Hpy8I | GTNNAC | 1 cut(s) | 359 |
| HpyAV | CCTTC | 1 cut(s) | 439 |
| HpyCH4III | ACNGT | 3 cut(s) | 143, 169, 451 |
| HpyCH4IV | ACGT | 1 cut(s) | 231 |
| HpyCH4V | TGCA | 3 cut(s) | 73, 78, 447 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 79 |
| HpySE526I | ACGT | 1 cut(s) | 231 |
| Hsp92II | CATG | 4 cut(s) | 73, 393, 447, 474 |
| Kzo9I | GATC | 7 cut(s) | 112, 186, 216, 317, 335, 382, 408 |
| LmnI | GCTCC | 2 cut(s) | 133, 393 |
| MabI | ACCWGGT | 1 cut(s) | 92 |
| MaeI | CTAG | 1 cut(s) | 362 |
| MaeII | ACGT | 1 cut(s) | 231 |
| MaeIII | GTNAC | 1 cut(s) | 143 |
| MalI | GATC | 7 cut(s) | 114, 188, 218, 319, 337, 384, 410 |
| MboI | GATC | 7 cut(s) | 112, 186, 216, 317, 335, 382, 408 |
| MboII | GAAGA | 4 cut(s) | 286, 289, 292, 418 |
| MflI | RGATCY | 2 cut(s) | 335, 382 |
| MhlI | GDGCHC | 2 cut(s) | 262, 309 |
| MluCI | AATT | 1 cut(s) | 349 |
| MmeI | TCCRAC | 1 cut(s) | 47 |
| MnlI | CCTC | 6 cut(s) | 22, 29, 137, 177, 394, 447 |
| Mph1103I | ATGCAT | 1 cut(s) | 75 |
| MseI | TTAA | 3 cut(s) | 156, 342, 422 |
| MspI | CCGG | 1 cut(s) | 16 |
| MspR9I | CCNGG | 2 cut(s) | 94, 415 |
| MvaI | CCWGG | 2 cut(s) | 94, 415 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 79 |
| NdeII | GATC | 7 cut(s) | 112, 186, 216, 317, 335, 382, 408 |
| NlaIII | CATG | 4 cut(s) | 73, 393, 447, 474 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 245, 337, 384 |
| NmuCI | GTSAC | 1 cut(s) | 143 |
| NsiI | ATGCAT | 1 cut(s) | 75 |
| NspI | RCATGY | 1 cut(s) | 73 |
| PaeR7I | CTCGAG | 1 cut(s) | 261 |
| PfeI | GAWTC | 2 cut(s) | 123, 250 |
| PinAI | ACCGGT | 1 cut(s) | 15 |
| PshBI | ATTAAT | 1 cut(s) | 342 |
| Psp6I | CCWGG | 2 cut(s) | 92, 413 |
| PspGI | CCWGG | 2 cut(s) | 92, 413 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 245, 337, 384 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 162, 194 |
| PsuI | RGATCY | 2 cut(s) | 335, 382 |
| SaqAI | TTAA | 3 cut(s) | 156, 342, 422 |
| Sau3AI | GATC | 7 cut(s) | 112, 186, 216, 317, 335, 382, 408 |
| ScrFI | CCNGG | 2 cut(s) | 94, 415 |
| SduI | GDGCHC | 2 cut(s) | 262, 309 |
| SetI | ASST | 7 cut(s) | 98, 138, 180, 201, 234, 273, 288 |
| SexAI | ACCWGGT | 1 cut(s) | 92 |
| SfcI | CTRYAG | 2 cut(s) | 108, 168 |
| Sfr274I | CTCGAG | 1 cut(s) | 261 |
| SlaI | CTCGAG | 1 cut(s) | 261 |
| SmlI | CTYRAG | 2 cut(s) | 128, 261 |
| SmoI | CTYRAG | 2 cut(s) | 128, 261 |
| SpeI | ACTAGT | 1 cut(s) | 361 |
| Sse9I | AATT | 1 cut(s) | 349 |
| SspMI | CTAG | 1 cut(s) | 362 |
| StyD4I | CCNGG | 2 cut(s) | 92, 413 |
| TaaI | ACNGT | 3 cut(s) | 143, 169, 451 |
| TaiI | ACGT | 1 cut(s) | 234 |
| TaqI | TCGA | 3 cut(s) | 54, 219, 262 |
| TasI | AATT | 1 cut(s) | 349 |
| TfiI | GAWTC | 2 cut(s) | 123, 250 |
| Tru1I | TTAA | 3 cut(s) | 156, 342, 422 |
| Tru9I | TTAA | 3 cut(s) | 156, 342, 422 |
| TscAI | CASTG | 1 cut(s) | 172 |
| TseFI | GTSAC | 1 cut(s) | 143 |
| Tsp45I | GTSAC | 1 cut(s) | 143 |
| TspRI | CASTG | 1 cut(s) | 172 |
| VspI | ATTAAT | 1 cut(s) | 342 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XhoI | CTCGAG | 1 cut(s) | 261 |
| XspI | CTAG | 1 cut(s) | 362 |
| Zsp2I | ATGCAT | 1 cut(s) | 75 |