Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 94 |
| Acc36I | ACCTGC | 1 cut(s) | 94 |
| AccIII | TCCGGA | 1 cut(s) | 432 |
| AciI | CCGC | 3 cut(s) | 102, 147, 439 |
| AclWI | GGATC | 3 cut(s) | 63, 82, 163 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 311 |
| AgsI | TTSAA | 2 cut(s) | 192, 287 |
| AhlI | ACTAGT | 1 cut(s) | 212 |
| AjnI | CCWGG | 1 cut(s) | 276 |
| AleI | CACNNNNGTG | 1 cut(s) | 369 |
| AluBI | AGCT | 3 cut(s) | 200, 394, 419 |
| AluI | AGCT | 3 cut(s) | 200, 394, 419 |
| Alw21I | GWGCWC | 1 cut(s) | 396 |
| AlwI | GGATC | 3 cut(s) | 63, 82, 163 |
| Aor13HI | TCCGGA | 1 cut(s) | 432 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 214 |
| AsuHPI | GGTGA | 3 cut(s) | 35, 266, 326 |
| BanII | GRGCYC | 1 cut(s) | 396 |
| BbsI | GAAGAC | 1 cut(s) | 344 |
| Bbv12I | GWGCWC | 1 cut(s) | 396 |
| BccI | CCATC | 1 cut(s) | 344 |
| BciT130I | CCWGG | 1 cut(s) | 278 |
| BcuI | ACTAGT | 1 cut(s) | 212 |
| BfaI | CTAG | 3 cut(s) | 180, 201, 213 |
| BfuAI | ACCTGC | 1 cut(s) | 94 |
| BisI | GCNGC | 1 cut(s) | 439 |
| BlpI | GCTNAGC | 1 cut(s) | 395 |
| BlsI | GCNGC | 1 cut(s) | 440 |
| Bme1390I | CCNGG | 1 cut(s) | 278 |
| BmiI | GGNNCC | 1 cut(s) | 437 |
| BmrFI | CCNGG | 1 cut(s) | 278 |
| BpiI | GAAGAC | 1 cut(s) | 344 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 395 |
| BpuEI | CTTGAG | 1 cut(s) | 410 |
| BsaWI | WCCGGW | 1 cut(s) | 432 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 311 |
| BseAI | TCCGGA | 1 cut(s) | 432 |
| BseBI | CCWGG | 1 cut(s) | 278 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 311 |
| BseMII | CTCAG | 2 cut(s) | 210, 409 |
| BseRI | GAGGAG | 1 cut(s) | 279 |
| BsgI | GTGCAG | 1 cut(s) | 66 |
| BsiHKAI | GWGCWC | 1 cut(s) | 396 |
| BsiSI | CCGG | 1 cut(s) | 433 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 311 |
| Bsp1286I | GDGCHC | 1 cut(s) | 396 |
| Bsp13I | TCCGGA | 1 cut(s) | 432 |
| Bsp143I | GATC | 5 cut(s) | 8, 55, 74, 155, 271 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 395 |
| BspACI | CCGC | 3 cut(s) | 102, 147, 439 |
| BspCNI | CTCAG | 2 cut(s) | 209, 408 |
| BspEI | TCCGGA | 1 cut(s) | 432 |
| BspLI | GGNNCC | 1 cut(s) | 437 |
| BspMI | ACCTGC | 1 cut(s) | 94 |
| BspPI | GGATC | 3 cut(s) | 63, 82, 163 |
| BssMI | GATC | 5 cut(s) | 8, 55, 74, 155, 271 |
| Bst2UI | CCWGG | 1 cut(s) | 278 |
| Bst4CI | ACNGT | 2 cut(s) | 300, 368 |
| BstDEI | CTNAG | 2 cut(s) | 196, 395 |
| BstKTI | GATC | 5 cut(s) | 11, 58, 77, 158, 274 |
| BstMBI | GATC | 5 cut(s) | 8, 55, 74, 155, 271 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 101, 405 |
| BstNI | CCWGG | 1 cut(s) | 278 |
| BstSCI | CCNGG | 1 cut(s) | 276 |
| BstV2I | GAAGAC | 1 cut(s) | 344 |
| BstX2I | RGATCY | 2 cut(s) | 74, 155 |
| BstYI | RGATCY | 2 cut(s) | 74, 155 |
| BtsIMutI | CAGTG | 1 cut(s) | 296 |
| BveI | ACCTGC | 1 cut(s) | 94 |
| CviAII | CATG | 5 cut(s) | 50, 166, 232, 311, 334 |
| CviJI | RGCY | 7 cut(s) | 16, 200, 375, 394, 399, 419, 438 |
| CviKI_1 | RGCY | 7 cut(s) | 16, 200, 375, 394, 399, 419, 438 |
| DdeI | CTNAG | 2 cut(s) | 196, 395 |
| DpnI | GATC | 5 cut(s) | 10, 57, 76, 157, 273 |
| DpnII | GATC | 5 cut(s) | 8, 55, 74, 155, 271 |
| Ecl136II | GAGCTC | 1 cut(s) | 394 |
| Eco24I | GRGCYC | 1 cut(s) | 396 |
| Eco53kI | GAGCTC | 1 cut(s) | 394 |
| EcoICRI | GAGCTC | 1 cut(s) | 394 |
| EcoRII | CCWGG | 1 cut(s) | 276 |
| EcoT38I | GRGCYC | 1 cut(s) | 396 |
| FaeI | CATG | 5 cut(s) | 53, 169, 235, 314, 337 |
| FatI | CATG | 5 cut(s) | 49, 165, 231, 310, 333 |
| Fnu4HI | GCNGC | 1 cut(s) | 439 |
| FriOI | GRGCYC | 1 cut(s) | 396 |
| Fsp4HI | GCNGC | 1 cut(s) | 439 |
| FspBI | CTAG | 3 cut(s) | 180, 201, 213 |
| GluI | GCNGC | 1 cut(s) | 439 |
| HapII | CCGG | 1 cut(s) | 433 |
| Hin1II | CATG | 5 cut(s) | 53, 169, 235, 314, 337 |
| HpaII | CCGG | 1 cut(s) | 433 |
| HphI | GGTGA | 3 cut(s) | 35, 266, 326 |
| Hpy188I | TCNGA | 1 cut(s) | 349 |
| Hpy188III | TCNNGA | 1 cut(s) | 433 |
| HpyCH4III | ACNGT | 2 cut(s) | 300, 368 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 83, 310 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 101, 405 |
| HpyF3I | CTNAG | 2 cut(s) | 196, 395 |
| Hsp92II | CATG | 5 cut(s) | 53, 169, 235, 314, 337 |
| Kpn2I | TCCGGA | 1 cut(s) | 432 |
| Kzo9I | GATC | 5 cut(s) | 8, 55, 74, 155, 271 |
| LmnI | GCTCC | 1 cut(s) | 435 |
| LpnPI | CCDG | 5 cut(s) | 90, 99, 263, 290, 418 |
| MaeI | CTAG | 3 cut(s) | 180, 201, 213 |
| MaeIII | GTNAC | 3 cut(s) | 34, 329, 362 |
| MalI | GATC | 5 cut(s) | 10, 57, 76, 157, 273 |
| MboI | GATC | 5 cut(s) | 8, 55, 74, 155, 271 |
| MboII | GAAGA | 4 cut(s) | 69, 90, 281, 349 |
| MfeI | CAATTG | 1 cut(s) | 40 |
| MflI | RGATCY | 2 cut(s) | 74, 155 |
| MhlI | GDGCHC | 1 cut(s) | 396 |
| MluCI | AATT | 1 cut(s) | 40 |
| MnlI | CCTC | 6 cut(s) | 46, 197, 257, 310, 347, 403 |
| MroI | TCCGGA | 1 cut(s) | 432 |
| MroXI | GAANNNNTTC | 1 cut(s) | 214 |
| MseI | TTAA | 2 cut(s) | 66, 123 |
| MslI | CAYNNNNRTG | 1 cut(s) | 369 |
| MspA1I | CMGCKG | 2 cut(s) | 104, 441 |
| MspI | CCGG | 1 cut(s) | 433 |
| MspR9I | CCNGG | 1 cut(s) | 278 |
| MunI | CAATTG | 1 cut(s) | 40 |
| MvaI | CCWGG | 1 cut(s) | 278 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 101, 405 |
| NdeII | GATC | 5 cut(s) | 8, 55, 74, 155, 271 |
| NlaIII | CATG | 5 cut(s) | 53, 169, 235, 314, 337 |
| NlaIV | GGNNCC | 1 cut(s) | 437 |
| NmuCI | GTSAC | 1 cut(s) | 362 |
| OliI | CACNNNNGTG | 1 cut(s) | 369 |
| PaqCI | CACCTGC | 1 cut(s) | 94 |
| PdmI | GAANNNNTTC | 1 cut(s) | 214 |
| PkrI | GCNGC | 1 cut(s) | 440 |
| Psp124BI | GAGCTC | 1 cut(s) | 396 |
| Psp6I | CCWGG | 1 cut(s) | 276 |
| PspGI | CCWGG | 1 cut(s) | 276 |
| PspN4I | GGNNCC | 1 cut(s) | 437 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 202, 234 |
| PsuI | RGATCY | 2 cut(s) | 74, 155 |
| RseI | CAYNNNNRTG | 1 cut(s) | 369 |
| SacI | GAGCTC | 1 cut(s) | 396 |
| SaqAI | TTAA | 2 cut(s) | 66, 123 |
| SatI | GCNGC | 1 cut(s) | 439 |
| Sau3AI | GATC | 5 cut(s) | 8, 55, 74, 155, 271 |
| ScrFI | CCNGG | 1 cut(s) | 278 |
| SduI | GDGCHC | 1 cut(s) | 396 |
| SetI | ASST | 5 cut(s) | 88, 202, 358, 396, 421 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 369 |
| SmlI | CTYRAG | 1 cut(s) | 389 |
| SmoI | CTYRAG | 1 cut(s) | 389 |
| SpeI | ACTAGT | 1 cut(s) | 212 |
| Sse9I | AATT | 1 cut(s) | 40 |
| SsiI | CCGC | 3 cut(s) | 102, 147, 439 |
| SspMI | CTAG | 3 cut(s) | 180, 201, 213 |
| SstI | GAGCTC | 1 cut(s) | 396 |
| StyD4I | CCNGG | 1 cut(s) | 276 |
| TaaI | ACNGT | 2 cut(s) | 300, 368 |
| TasI | AATT | 1 cut(s) | 40 |
| TauI | GCSGC | 1 cut(s) | 441 |
| Tru1I | TTAA | 2 cut(s) | 66, 123 |
| Tru9I | TTAA | 2 cut(s) | 66, 123 |
| TscAI | CASTG | 1 cut(s) | 303 |
| TseFI | GTSAC | 1 cut(s) | 362 |
| Tsp45I | GTSAC | 1 cut(s) | 362 |
| TspDTI | ATGAA | 3 cut(s) | 176, 248, 350 |
| TspRI | CASTG | 1 cut(s) | 303 |
| XmnI | GAANNNNTTC | 1 cut(s) | 214 |
| XspI | CTAG | 3 cut(s) | 180, 201, 213 |