Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 4 - 120 | 6.4e-07 | Endonuclease/Exonuclease/phosphatase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 381 |
| AcoI | YGGCCR | 1 cut(s) | 190 |
| AcsI | RAATTY | 1 cut(s) | 6 |
| AfaI | GTAC | 1 cut(s) | 247 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 51, 199 |
| AgsI | TTSAA | 1 cut(s) | 333 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 193 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 30 |
| AluBI | AGCT | 2 cut(s) | 318, 364 |
| AluI | AGCT | 2 cut(s) | 318, 364 |
| Alw26I | GTCTC | 1 cut(s) | 342 |
| AlwI | GGATC | 1 cut(s) | 381 |
| AoxI | GGCC | 3 cut(s) | 83, 190, 202 |
| ApeKI | GCWGC | 1 cut(s) | 361 |
| ApoI | RAATTY | 1 cut(s) | 6 |
| AspLEI | GCGC | 1 cut(s) | 154 |
| AspS9I | GGNCC | 1 cut(s) | 202 |
| AsuC2I | CCSGG | 1 cut(s) | 291 |
| AsuHPI | GGTGA | 1 cut(s) | 305 |
| BbvI | GCAGC | 1 cut(s) | 373 |
| BceAI | ACGGC | 1 cut(s) | 205 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 15, 49, 350, 384 |
| BcnI | CCSGG | 1 cut(s) | 291 |
| BcoDI | GTCTC | 1 cut(s) | 342 |
| BfaI | CTAG | 2 cut(s) | 51, 155 |
| BfmI | CTRYAG | 1 cut(s) | 339 |
| BisI | GCNGC | 1 cut(s) | 362 |
| BlsI | GCNGC | 1 cut(s) | 363 |
| Bme1390I | CCNGG | 1 cut(s) | 291 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 193 |
| BmgT120I | GGNCC | 1 cut(s) | 202 |
| BmiI | GGNNCC | 1 cut(s) | 203 |
| BmrFI | CCNGG | 1 cut(s) | 291 |
| BmsI | GCATC | 1 cut(s) | 134 |
| BpuMI | CCSGG | 1 cut(s) | 291 |
| BsaJI | CCNNGG | 1 cut(s) | 205 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 51, 199 |
| Bse118I | RCCGGY | 1 cut(s) | 81 |
| Bse1I | ACTGG | 1 cut(s) | 193 |
| Bse3DI | GCAATG | 1 cut(s) | 43 |
| BseDI | CCNNGG | 1 cut(s) | 205 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 51, 199 |
| BseMI | GCAATG | 1 cut(s) | 43 |
| BseMII | CTCAG | 1 cut(s) | 183 |
| BseNI | ACTGG | 1 cut(s) | 193 |
| BseXI | GCAGC | 1 cut(s) | 373 |
| BsgI | GTGCAG | 2 cut(s) | 123, 240 |
| BshFI | GGCC | 3 cut(s) | 85, 192, 204 |
| BsiSI | CCGG | 2 cut(s) | 82, 290 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 51, 199 |
| BsmAI | GTCTC | 1 cut(s) | 342 |
| BsnI | GGCC | 3 cut(s) | 85, 192, 204 |
| Bsp143I | GATC | 3 cut(s) | 69, 373, 382 |
| BspANI | GGCC | 3 cut(s) | 85, 192, 204 |
| BspCNI | CTCAG | 1 cut(s) | 182 |
| BspLI | GGNNCC | 1 cut(s) | 203 |
| BspMAI | CTGCAG | 1 cut(s) | 343 |
| BspPI | GGATC | 1 cut(s) | 381 |
| BsrDI | GCAATG | 1 cut(s) | 43 |
| BsrFI | RCCGGY | 1 cut(s) | 81 |
| BsrI | ACTGG | 1 cut(s) | 193 |
| BssAI | RCCGGY | 1 cut(s) | 81 |
| BssECI | CCNNGG | 1 cut(s) | 205 |
| BssMI | GATC | 3 cut(s) | 69, 373, 382 |
| BssT1I | CCWWGG | 1 cut(s) | 205 |
| BstDEI | CTNAG | 3 cut(s) | 11, 169, 182 |
| BstHHI | GCGC | 1 cut(s) | 154 |
| BstKTI | GATC | 3 cut(s) | 72, 376, 385 |
| BstMAI | GTCTC | 1 cut(s) | 342 |
| BstMBI | GATC | 3 cut(s) | 69, 373, 382 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 151, 324 |
| BstSCI | CCNGG | 1 cut(s) | 289 |
| BstSFI | CTRYAG | 1 cut(s) | 339 |
| BstV1I | GCAGC | 1 cut(s) | 373 |
| BstX2I | RGATCY | 1 cut(s) | 373 |
| BstYI | RGATCY | 1 cut(s) | 373 |
| BsuRI | GGCC | 3 cut(s) | 85, 192, 204 |
| BtsI | GCAGTG | 1 cut(s) | 140 |
| BtsIMutI | CAGTG | 1 cut(s) | 140 |
| CfoI | GCGC | 1 cut(s) | 154 |
| Cfr10I | RCCGGY | 1 cut(s) | 81 |
| Cfr13I | GGNCC | 1 cut(s) | 202 |
| Csp6I | GTAC | 1 cut(s) | 246 |
| CviAII | CATG | 1 cut(s) | 357 |
| CviJI | RGCY | 6 cut(s) | 56, 85, 192, 204, 318, 364 |
| CviKI_1 | RGCY | 6 cut(s) | 56, 85, 192, 204, 318, 364 |
| CviQI | GTAC | 1 cut(s) | 246 |
| DdeI | CTNAG | 3 cut(s) | 11, 169, 182 |
| DpnI | GATC | 3 cut(s) | 71, 375, 384 |
| DpnII | GATC | 3 cut(s) | 69, 373, 382 |
| DraI | TTTAAA | 1 cut(s) | 60 |
| DriI | GACNNNNNGTC | 1 cut(s) | 193 |
| EaeI | YGGCCR | 1 cut(s) | 190 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 193 |
| Eco130I | CCWWGG | 1 cut(s) | 205 |
| EcoO109I | RGGNCCY | 1 cut(s) | 202 |
| EcoRI | GAATTC | 1 cut(s) | 6 |
| EcoT14I | CCWWGG | 1 cut(s) | 205 |
| ErhI | CCWWGG | 1 cut(s) | 205 |
| FaeI | CATG | 1 cut(s) | 360 |
| FaiI | YATR | 8 cut(s) | 147, 166, 264, 266, 272, 324, 358, 400 |
| FatI | CATG | 1 cut(s) | 356 |
| FauNDI | CATATG | 1 cut(s) | 264 |
| Fnu4HI | GCNGC | 1 cut(s) | 362 |
| Fsp4HI | GCNGC | 1 cut(s) | 362 |
| FspBI | CTAG | 2 cut(s) | 51, 155 |
| GlaI | GCGC | 1 cut(s) | 153 |
| GluI | GCNGC | 1 cut(s) | 362 |
| HaeIII | GGCC | 3 cut(s) | 85, 192, 204 |
| HapII | CCGG | 2 cut(s) | 82, 290 |
| HhaI | GCGC | 1 cut(s) | 154 |
| Hin1II | CATG | 1 cut(s) | 360 |
| Hin6I | GCGC | 1 cut(s) | 152 |
| HinP1I | GCGC | 1 cut(s) | 152 |
| HinfI | GANTC | 2 cut(s) | 30, 389 |
| HpaII | CCGG | 2 cut(s) | 82, 290 |
| HphI | GGTGA | 1 cut(s) | 305 |
| Hpy166II | GTNNAC | 1 cut(s) | 296 |
| Hpy188I | TCNGA | 3 cut(s) | 130, 172, 382 |
| Hpy188III | TCNNGA | 3 cut(s) | 217, 371, 386 |
| Hpy8I | GTNNAC | 1 cut(s) | 296 |
| Hpy99I | CGWCG | 1 cut(s) | 191 |
| HpyAV | CCTTC | 1 cut(s) | 377 |
| HpyCH4V | TGCA | 7 cut(s) | 36, 125, 140, 145, 164, 257, 341 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 151, 324 |
| HpyF3I | CTNAG | 3 cut(s) | 11, 169, 182 |
| Hsp92II | CATG | 1 cut(s) | 360 |
| HspAI | GCGC | 1 cut(s) | 152 |
| Kzo9I | GATC | 3 cut(s) | 69, 373, 382 |
| LmnI | GCTCC | 2 cut(s) | 209, 369 |
| LpnPI | CCDG | 7 cut(s) | 95, 183, 202, 206, 224, 303, 337 |
| Lsp1109I | GCAGC | 1 cut(s) | 373 |
| LweI | GCATC | 1 cut(s) | 134 |
| MaeI | CTAG | 2 cut(s) | 51, 155 |
| MalI | GATC | 3 cut(s) | 71, 375, 384 |
| MboI | GATC | 3 cut(s) | 69, 373, 382 |
| MflI | RGATCY | 1 cut(s) | 373 |
| MluCI | AATT | 4 cut(s) | 6, 19, 89, 301 |
| MlyI | GAGTC | 1 cut(s) | 383 |
| MnlI | CCTC | 3 cut(s) | 20, 96, 166 |
| MseI | TTAA | 1 cut(s) | 59 |
| MspI | CCGG | 2 cut(s) | 82, 290 |
| MspR9I | CCNGG | 1 cut(s) | 291 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 151, 324 |
| NciI | CCSGG | 1 cut(s) | 291 |
| NdeI | CATATG | 1 cut(s) | 264 |
| NdeII | GATC | 3 cut(s) | 69, 373, 382 |
| NlaIII | CATG | 1 cut(s) | 360 |
| NlaIV | GGNNCC | 1 cut(s) | 203 |
| PfeI | GAWTC | 1 cut(s) | 30 |
| PkrI | GCNGC | 1 cut(s) | 363 |
| PleI | GAGTC | 1 cut(s) | 383 |
| PpsI | GAGTC | 1 cut(s) | 383 |
| PspN4I | GGNNCC | 1 cut(s) | 203 |
| PspPI | GGNCC | 1 cut(s) | 202 |
| PstI | CTGCAG | 1 cut(s) | 343 |
| PsuI | RGATCY | 1 cut(s) | 373 |
| RsaI | GTAC | 1 cut(s) | 247 |
| RsaNI | GTAC | 1 cut(s) | 246 |
| SaqAI | TTAA | 1 cut(s) | 59 |
| SatI | GCNGC | 1 cut(s) | 362 |
| Sau3AI | GATC | 3 cut(s) | 69, 373, 382 |
| Sau96I | GGNCC | 1 cut(s) | 202 |
| SchI | GAGTC | 1 cut(s) | 383 |
| ScrFI | CCNGG | 1 cut(s) | 291 |
| SetI | ASST | 5 cut(s) | 160, 243, 320, 356, 366 |
| SfaNI | GCATC | 1 cut(s) | 134 |
| SfcI | CTRYAG | 1 cut(s) | 339 |
| Sse9I | AATT | 4 cut(s) | 6, 19, 89, 301 |
| SspMI | CTAG | 2 cut(s) | 51, 155 |
| StyD4I | CCNGG | 1 cut(s) | 289 |
| StyI | CCWWGG | 1 cut(s) | 205 |
| TaqI | TCGA | 1 cut(s) | 25 |
| TasI | AATT | 4 cut(s) | 6, 19, 89, 301 |
| TfiI | GAWTC | 1 cut(s) | 30 |
| Tru1I | TTAA | 1 cut(s) | 59 |
| Tru9I | TTAA | 1 cut(s) | 59 |
| TscAI | CASTG | 1 cut(s) | 147 |
| TseI | GCWGC | 1 cut(s) | 361 |
| TspRI | CASTG | 1 cut(s) | 147 |
| XapI | RAATTY | 1 cut(s) | 6 |
| XspI | CTAG | 2 cut(s) | 51, 155 |