Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 166 |
| AccIII | TCCGGA | 1 cut(s) | 639 |
| AciI | CCGC | 1 cut(s) | 646 |
| AclWI | GGATC | 4 cut(s) | 194, 399, 412, 460 |
| AcuI | CTGAAG | 2 cut(s) | 293, 362 |
| AfaI | GTAC | 1 cut(s) | 209 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 518, 613 |
| AgsI | TTSAA | 2 cut(s) | 302, 371 |
| AhlI | ACTAGT | 1 cut(s) | 431 |
| AjnI | CCWGG | 3 cut(s) | 92, 483, 611 |
| AleI | CACNNNNGTG | 1 cut(s) | 576 |
| AluBI | AGCT | 9 cut(s) | 136, 199, 271, 286, 311, 340, 355, 601, 626 |
| AluI | AGCT | 9 cut(s) | 136, 199, 271, 286, 311, 340, 355, 601, 626 |
| Alw21I | GWGCWC | 1 cut(s) | 603 |
| AlwI | GGATC | 4 cut(s) | 194, 399, 412, 460 |
| Ama87I | CYCGRG | 1 cut(s) | 261 |
| Aor13HI | TCCGGA | 1 cut(s) | 639 |
| ApeKI | GCWGC | 1 cut(s) | 50 |
| AseI | ATTAAT | 1 cut(s) | 411 |
| AsuHPI | GGTGA | 2 cut(s) | 473, 533 |
| AvaI | CYCGRG | 1 cut(s) | 261 |
| BaeGI | GKGCMC | 1 cut(s) | 378 |
| BamHI | GGATCC | 1 cut(s) | 404 |
| BanII | GRGCYC | 2 cut(s) | 262, 603 |
| Bbv12I | GWGCWC | 1 cut(s) | 603 |
| BbvI | GCAGC | 1 cut(s) | 62 |
| BccI | CCATC | 2 cut(s) | 26, 551 |
| BciT130I | CCWGG | 3 cut(s) | 94, 485, 613 |
| BcuI | ACTAGT | 1 cut(s) | 431 |
| BfaI | CTAG | 3 cut(s) | 330, 432, 627 |
| BfmI | CTRYAG | 2 cut(s) | 108, 168 |
| BfuAI | ACCTGC | 1 cut(s) | 166 |
| BisI | GCNGC | 2 cut(s) | 51, 646 |
| BlpI | GCTNAGC | 1 cut(s) | 602 |
| BlsI | GCNGC | 2 cut(s) | 52, 647 |
| Bme1390I | CCNGG | 3 cut(s) | 94, 485, 613 |
| BmeT110I | CYCGRG | 1 cut(s) | 261 |
| BmiI | GGNNCC | 4 cut(s) | 6, 245, 406, 644 |
| BmrFI | CCNGG | 3 cut(s) | 94, 485, 613 |
| BmsI | GCATC | 1 cut(s) | 28 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 175, 207 |
| BpmI | CTGGAG | 1 cut(s) | 179 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 602 |
| BpuEI | CTTGAG | 1 cut(s) | 617 |
| BsaBI | GATNNNNATC | 1 cut(s) | 122 |
| BsaJI | CCNNGG | 1 cut(s) | 612 |
| BsaWI | WCCGGW | 1 cut(s) | 639 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 518, 613 |
| Bse118I | RCCGGY | 1 cut(s) | 15 |
| Bse3DI | GCAATG | 1 cut(s) | 73 |
| Bse8I | GATNNNNATC | 1 cut(s) | 122 |
| BseAI | TCCGGA | 1 cut(s) | 639 |
| BseBI | CCWGG | 3 cut(s) | 94, 485, 613 |
| BseDI | CCNNGG | 1 cut(s) | 612 |
| BseGI | GGATG | 4 cut(s) | 19, 37, 301, 370 |
| BseJI | GATNNNNATC | 1 cut(s) | 122 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 518, 613 |
| BseMI | GCAATG | 1 cut(s) | 73 |
| BseMII | CTCAG | 1 cut(s) | 616 |
| BseRI | GAGGAG | 1 cut(s) | 486 |
| BseSI | GKGCMC | 1 cut(s) | 378 |
| BseXI | GCAGC | 1 cut(s) | 62 |
| BsiHKAI | GWGCWC | 1 cut(s) | 603 |
| BsiHKCI | CYCGRG | 1 cut(s) | 261 |
| BsiSI | CCGG | 2 cut(s) | 16, 640 |
| BslFI | GGGAC | 1 cut(s) | 145 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 518, 613 |
| BsmFI | GGGAC | 1 cut(s) | 145 |
| BsoBI | CYCGRG | 1 cut(s) | 261 |
| Bsp1286I | GDGCHC | 3 cut(s) | 262, 378, 603 |
| Bsp13I | TCCGGA | 1 cut(s) | 639 |
| Bsp143I | GATC | 6 cut(s) | 112, 186, 216, 404, 452, 478 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 602 |
| BspACI | CCGC | 1 cut(s) | 646 |
| BspCNI | CTCAG | 1 cut(s) | 615 |
| BspEI | TCCGGA | 1 cut(s) | 639 |
| BspLI | GGNNCC | 4 cut(s) | 6, 245, 406, 644 |
| BspMI | ACCTGC | 1 cut(s) | 166 |
| BspPI | GGATC | 4 cut(s) | 194, 399, 412, 460 |
| BsrDI | GCAATG | 1 cut(s) | 73 |
| BsrFI | RCCGGY | 1 cut(s) | 15 |
| BssAI | RCCGGY | 1 cut(s) | 15 |
| BssECI | CCNNGG | 1 cut(s) | 612 |
| BssMI | GATC | 6 cut(s) | 112, 186, 216, 404, 452, 478 |
| Bst2UI | CCWGG | 3 cut(s) | 94, 485, 613 |
| Bst4CI | ACNGT | 4 cut(s) | 169, 507, 521, 575 |
| BstC8I | GCNNGC | 2 cut(s) | 80, 309 |
| BstDEI | CTNAG | 1 cut(s) | 602 |
| BstF5I | GGATG | 4 cut(s) | 19, 37, 301, 370 |
| BstKTI | GATC | 6 cut(s) | 115, 189, 219, 407, 455, 481 |
| BstMBI | GATC | 6 cut(s) | 112, 186, 216, 404, 452, 478 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 79 |
| BstNI | CCWGG | 3 cut(s) | 94, 485, 613 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSCI | CCNGG | 3 cut(s) | 92, 483, 611 |
| BstSFI | CTRYAG | 2 cut(s) | 108, 168 |
| BstSLI | GKGCMC | 1 cut(s) | 378 |
| BstV1I | GCAGC | 1 cut(s) | 62 |
| BstX2I | RGATCY | 2 cut(s) | 404, 452 |
| BstYI | RGATCY | 2 cut(s) | 404, 452 |
| BtsCI | GGATG | 4 cut(s) | 19, 37, 301, 370 |
| BtsIMutI | CAGTG | 2 cut(s) | 165, 503 |
| BveI | ACCTGC | 1 cut(s) | 166 |
| Cac8I | GCNNGC | 2 cut(s) | 80, 309 |
| Cfr10I | RCCGGY | 1 cut(s) | 15 |
| CsiI | ACCWGGT | 1 cut(s) | 92 |
| Csp6I | GTAC | 1 cut(s) | 208 |
| CviAII | CATG | 4 cut(s) | 70, 460, 514, 541 |
| CviQI | GTAC | 1 cut(s) | 208 |
| DdeI | CTNAG | 1 cut(s) | 602 |
| DpnI | GATC | 6 cut(s) | 114, 188, 218, 406, 454, 480 |
| DpnII | GATC | 6 cut(s) | 112, 186, 216, 404, 452, 478 |
| Ecl136II | GAGCTC | 1 cut(s) | 601 |
| Eco24I | GRGCYC | 2 cut(s) | 262, 603 |
| Eco53kI | GAGCTC | 1 cut(s) | 601 |
| Eco57I | CTGAAG | 2 cut(s) | 293, 362 |
| Eco88I | CYCGRG | 1 cut(s) | 261 |
| EcoICRI | GAGCTC | 1 cut(s) | 601 |
| EcoRII | CCWGG | 3 cut(s) | 92, 483, 611 |
| EcoT22I | ATGCAT | 1 cut(s) | 75 |
| EcoT38I | GRGCYC | 2 cut(s) | 262, 603 |
| FaeI | CATG | 4 cut(s) | 73, 463, 517, 544 |
| FaiI | YATR | 4 cut(s) | 71, 461, 515, 542 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 218, 250 |
| FaqI | GGGAC | 1 cut(s) | 145 |
| FatI | CATG | 4 cut(s) | 69, 459, 513, 540 |
| Fnu4HI | GCNGC | 2 cut(s) | 51, 646 |
| FokI | GGATG | 4 cut(s) | 6, 44, 308, 377 |
| FriOI | GRGCYC | 2 cut(s) | 262, 603 |
| Fsp4HI | GCNGC | 2 cut(s) | 51, 646 |
| FspBI | CTAG | 3 cut(s) | 330, 432, 627 |
| GluI | GCNGC | 2 cut(s) | 51, 646 |
| GsuI | CTGGAG | 1 cut(s) | 179 |
| HapII | CCGG | 2 cut(s) | 16, 640 |
| Hin1II | CATG | 4 cut(s) | 73, 463, 517, 544 |
| HincII | GTYRAC | 1 cut(s) | 429 |
| HindII | GTYRAC | 1 cut(s) | 429 |
| HindIII | AAGCTT | 1 cut(s) | 134 |
| HinfI | GANTC | 3 cut(s) | 123, 250, 319 |
| HpaII | CCGG | 2 cut(s) | 16, 640 |
| HphI | GGTGA | 2 cut(s) | 473, 533 |
| Hpy166II | GTNNAC | 1 cut(s) | 429 |
| Hpy188I | TCNGA | 5 cut(s) | 117, 183, 295, 364, 556 |
| Hpy188III | TCNNGA | 4 cut(s) | 220, 247, 263, 640 |
| Hpy8I | GTNNAC | 1 cut(s) | 429 |
| HpyAV | CCTTC | 1 cut(s) | 509 |
| HpyCH4III | ACNGT | 4 cut(s) | 169, 507, 521, 575 |
| HpyCH4IV | ACGT | 1 cut(s) | 231 |
| HpyCH4V | TGCA | 3 cut(s) | 73, 78, 517 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 79 |
| HpyF3I | CTNAG | 1 cut(s) | 602 |
| HpySE526I | ACGT | 1 cut(s) | 231 |
| Hsp92II | CATG | 4 cut(s) | 73, 463, 517, 544 |
| Kpn2I | TCCGGA | 1 cut(s) | 639 |
| Kzo9I | GATC | 6 cut(s) | 112, 186, 216, 404, 452, 478 |
| LmnI | GCTCC | 1 cut(s) | 642 |
| Lsp1109I | GCAGC | 1 cut(s) | 62 |
| LweI | GCATC | 1 cut(s) | 28 |
| MabI | ACCWGGT | 1 cut(s) | 92 |
| MaeI | CTAG | 3 cut(s) | 330, 432, 627 |
| MaeII | ACGT | 1 cut(s) | 231 |
| MaeIII | GTNAC | 1 cut(s) | 569 |
| MalI | GATC | 6 cut(s) | 114, 188, 218, 406, 454, 480 |
| MboI | GATC | 6 cut(s) | 112, 186, 216, 404, 452, 478 |
| MboII | GAAGA | 5 cut(s) | 286, 355, 358, 361, 488 |
| MflI | RGATCY | 2 cut(s) | 404, 452 |
| MhlI | GDGCHC | 3 cut(s) | 262, 378, 603 |
| MluCI | AATT | 1 cut(s) | 418 |
| MmeI | TCCRAC | 1 cut(s) | 47 |
| MnlI | CCTC | 8 cut(s) | 22, 29, 137, 177, 464, 517, 537, 554 |
| Mph1103I | ATGCAT | 1 cut(s) | 75 |
| MroI | TCCGGA | 1 cut(s) | 639 |
| MseI | TTAA | 3 cut(s) | 156, 411, 492 |
| MslI | CAYNNNNRTG | 1 cut(s) | 576 |
| MspA1I | CMGCKG | 1 cut(s) | 648 |
| MspI | CCGG | 2 cut(s) | 16, 640 |
| MspR9I | CCNGG | 3 cut(s) | 94, 485, 613 |
| MvaI | CCWGG | 3 cut(s) | 94, 485, 613 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 79 |
| NdeII | GATC | 6 cut(s) | 112, 186, 216, 404, 452, 478 |
| NlaIII | CATG | 4 cut(s) | 73, 463, 517, 544 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 245, 406, 644 |
| NmeAIII | GCCGAG | 1 cut(s) | 79 |
| NmuCI | GTSAC | 1 cut(s) | 569 |
| NsiI | ATGCAT | 1 cut(s) | 75 |
| NspI | RCATGY | 1 cut(s) | 73 |
| OliI | CACNNNNGTG | 1 cut(s) | 576 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 216 |
| PfeI | GAWTC | 3 cut(s) | 123, 250, 319 |
| PkrI | GCNGC | 2 cut(s) | 52, 647 |
| PshBI | ATTAAT | 1 cut(s) | 411 |
| Psp124BI | GAGCTC | 1 cut(s) | 603 |
| Psp6I | CCWGG | 3 cut(s) | 92, 483, 611 |
| PspGI | CCWGG | 3 cut(s) | 92, 483, 611 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 245, 406, 644 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 162, 194 |
| PsuI | RGATCY | 2 cut(s) | 404, 452 |
| RsaI | GTAC | 1 cut(s) | 209 |
| RsaNI | GTAC | 1 cut(s) | 208 |
| RseI | CAYNNNNRTG | 1 cut(s) | 576 |
| SacI | GAGCTC | 1 cut(s) | 603 |
| SaqAI | TTAA | 3 cut(s) | 156, 411, 492 |
| SatI | GCNGC | 2 cut(s) | 51, 646 |
| Sau3AI | GATC | 6 cut(s) | 112, 186, 216, 404, 452, 478 |
| ScrFI | CCNGG | 3 cut(s) | 94, 485, 613 |
| SduI | GDGCHC | 3 cut(s) | 262, 378, 603 |
| SexAI | ACCWGGT | 1 cut(s) | 92 |
| SfaNI | GCATC | 1 cut(s) | 28 |
| SfcI | CTRYAG | 2 cut(s) | 108, 168 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 576 |
| SmlI | CTYRAG | 1 cut(s) | 596 |
| SmoI | CTYRAG | 1 cut(s) | 596 |
| SpeI | ACTAGT | 1 cut(s) | 431 |
| Sse9I | AATT | 1 cut(s) | 418 |
| SsiI | CCGC | 1 cut(s) | 646 |
| SspMI | CTAG | 3 cut(s) | 330, 432, 627 |
| SstI | GAGCTC | 1 cut(s) | 603 |
| StyD4I | CCNGG | 3 cut(s) | 92, 483, 611 |
| TaaI | ACNGT | 4 cut(s) | 169, 507, 521, 575 |
| TaiI | ACGT | 1 cut(s) | 234 |
| TaqI | TCGA | 1 cut(s) | 219 |
| TasI | AATT | 1 cut(s) | 418 |
| TauI | GCSGC | 1 cut(s) | 648 |
| TfiI | GAWTC | 3 cut(s) | 123, 250, 319 |
| Tru1I | TTAA | 3 cut(s) | 156, 411, 492 |
| Tru9I | TTAA | 3 cut(s) | 156, 411, 492 |
| TscAI | CASTG | 2 cut(s) | 172, 510 |
| TseFI | GTSAC | 1 cut(s) | 569 |
| TseI | GCWGC | 1 cut(s) | 50 |
| Tsp45I | GTSAC | 1 cut(s) | 569 |
| TspDTI | ATGAA | 1 cut(s) | 332 |
| TspGWI | ACGGA | 1 cut(s) | 225 |
| TspRI | CASTG | 2 cut(s) | 172, 510 |
| VspI | ATTAAT | 1 cut(s) | 411 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XspI | CTAG | 3 cut(s) | 330, 432, 627 |
| Zsp2I | ATGCAT | 1 cut(s) | 75 |