Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 300 |
| AciI | CCGC | 2 cut(s) | 298, 354 |
| AclWI | GGATC | 1 cut(s) | 31 |
| AcsI | RAATTY | 1 cut(s) | 341 |
| AcuI | CTGAAG | 1 cut(s) | 369 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 179 |
| AgsI | TTSAA | 3 cut(s) | 60, 155, 338 |
| AhlI | ACTAGT | 1 cut(s) | 80 |
| AjnI | CCWGG | 1 cut(s) | 144 |
| AluBI | AGCT | 2 cut(s) | 68, 262 |
| AluI | AGCT | 2 cut(s) | 68, 262 |
| Alw21I | GWGCWC | 1 cut(s) | 264 |
| Alw26I | GTCTC | 1 cut(s) | 320 |
| AlwI | GGATC | 1 cut(s) | 31 |
| ApoI | RAATTY | 1 cut(s) | 341 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 82, 159 |
| AsuHPI | GGTGA | 2 cut(s) | 134, 194 |
| BanII | GRGCYC | 1 cut(s) | 264 |
| BbsI | GAAGAC | 1 cut(s) | 212 |
| Bbv12I | GWGCWC | 1 cut(s) | 264 |
| BceAI | ACGGC | 1 cut(s) | 295 |
| BciT130I | CCWGG | 1 cut(s) | 146 |
| BcoDI | GTCTC | 1 cut(s) | 320 |
| BcuI | ACTAGT | 1 cut(s) | 80 |
| BfaI | CTAG | 1 cut(s) | 81 |
| BisI | GCNGC | 1 cut(s) | 354 |
| BlsI | GCNGC | 1 cut(s) | 355 |
| Bme1390I | CCNGG | 1 cut(s) | 146 |
| BmrFI | CCNGG | 1 cut(s) | 146 |
| BpiI | GAAGAC | 1 cut(s) | 212 |
| BpmI | CTGGAG | 1 cut(s) | 90 |
| BpuEI | CTTGAG | 1 cut(s) | 278 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 179 |
| BseBI | CCWGG | 1 cut(s) | 146 |
| BseGI | GGATG | 1 cut(s) | 264 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 179 |
| BseMII | CTCAG | 2 cut(s) | 78, 207 |
| BseRI | GAGGAG | 1 cut(s) | 147 |
| Bsh1236I | CGCG | 1 cut(s) | 300 |
| BsiHKAI | GWGCWC | 1 cut(s) | 264 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 179 |
| BsmAI | GTCTC | 1 cut(s) | 320 |
| Bsp1286I | GDGCHC | 1 cut(s) | 264 |
| Bsp143I | GATC | 2 cut(s) | 23, 139 |
| BspACI | CCGC | 2 cut(s) | 298, 354 |
| BspCNI | CTCAG | 2 cut(s) | 77, 208 |
| BspFNI | CGCG | 1 cut(s) | 300 |
| BspPI | GGATC | 1 cut(s) | 31 |
| BssMI | GATC | 2 cut(s) | 23, 139 |
| Bst2UI | CCWGG | 1 cut(s) | 146 |
| Bst4CI | ACNGT | 3 cut(s) | 168, 182, 239 |
| Bst6I | CTCTTC | 2 cut(s) | 35, 318 |
| BstDEI | CTNAG | 3 cut(s) | 64, 216, 366 |
| BstF5I | GGATG | 1 cut(s) | 264 |
| BstFNI | CGCG | 1 cut(s) | 300 |
| BstKTI | GATC | 2 cut(s) | 26, 142 |
| BstMAI | GTCTC | 1 cut(s) | 320 |
| BstMBI | GATC | 2 cut(s) | 23, 139 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 362 |
| BstNI | CCWGG | 1 cut(s) | 146 |
| BstSCI | CCNGG | 1 cut(s) | 144 |
| BstUI | CGCG | 1 cut(s) | 300 |
| BstV2I | GAAGAC | 1 cut(s) | 212 |
| BstX2I | RGATCY | 1 cut(s) | 23 |
| BstYI | RGATCY | 1 cut(s) | 23 |
| BtsCI | GGATG | 1 cut(s) | 264 |
| BtsIMutI | CAGTG | 1 cut(s) | 164 |
| CviAII | CATG | 5 cut(s) | 34, 100, 121, 175, 202 |
| CviJI | RGCY | 7 cut(s) | 68, 231, 243, 262, 282, 353, 365 |
| CviKI_1 | RGCY | 7 cut(s) | 68, 231, 243, 262, 282, 353, 365 |
| DdeI | CTNAG | 3 cut(s) | 64, 216, 366 |
| DpnI | GATC | 2 cut(s) | 25, 141 |
| DpnII | GATC | 2 cut(s) | 23, 139 |
| Eam1104I | CTCTTC | 2 cut(s) | 35, 318 |
| EarI | CTCTTC | 2 cut(s) | 35, 318 |
| Ecl136II | GAGCTC | 1 cut(s) | 262 |
| Eco24I | GRGCYC | 1 cut(s) | 264 |
| Eco53kI | GAGCTC | 1 cut(s) | 262 |
| Eco57I | CTGAAG | 1 cut(s) | 369 |
| EcoICRI | GAGCTC | 1 cut(s) | 262 |
| EcoRII | CCWGG | 1 cut(s) | 144 |
| EcoT38I | GRGCYC | 1 cut(s) | 264 |
| FaeI | CATG | 5 cut(s) | 37, 103, 124, 178, 205 |
| FaiI | YATR | 8 cut(s) | 12, 21, 29, 35, 101, 122, 176, 203 |
| FatI | CATG | 5 cut(s) | 33, 99, 120, 174, 201 |
| FauI | CCCGC | 1 cut(s) | 305 |
| Fnu4HI | GCNGC | 1 cut(s) | 354 |
| FokI | GGATG | 1 cut(s) | 251 |
| FriOI | GRGCYC | 1 cut(s) | 264 |
| Fsp4HI | GCNGC | 1 cut(s) | 354 |
| FspBI | CTAG | 1 cut(s) | 81 |
| GluI | GCNGC | 1 cut(s) | 354 |
| GsuI | CTGGAG | 1 cut(s) | 90 |
| Hin1II | CATG | 5 cut(s) | 37, 103, 124, 178, 205 |
| HinfI | GANTC | 1 cut(s) | 359 |
| HphI | GGTGA | 2 cut(s) | 134, 194 |
| Hpy188I | TCNGA | 2 cut(s) | 217, 349 |
| HpyAV | CCTTC | 2 cut(s) | 170, 296 |
| HpyCH4III | ACNGT | 3 cut(s) | 168, 182, 239 |
| HpyCH4V | TGCA | 1 cut(s) | 178 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 362 |
| HpyF3I | CTNAG | 3 cut(s) | 64, 216, 366 |
| Hsp92II | CATG | 5 cut(s) | 37, 103, 124, 178, 205 |
| Kzo9I | GATC | 2 cut(s) | 23, 139 |
| LpnPI | CCDG | 3 cut(s) | 54, 131, 158 |
| MaeI | CTAG | 1 cut(s) | 81 |
| MalI | GATC | 2 cut(s) | 25, 141 |
| MboI | GATC | 2 cut(s) | 23, 139 |
| MboII | GAAGA | 5 cut(s) | 52, 119, 149, 217, 335 |
| MflI | RGATCY | 1 cut(s) | 23 |
| MhlI | GDGCHC | 1 cut(s) | 264 |
| MluCI | AATT | 1 cut(s) | 341 |
| MlyI | GAGTC | 1 cut(s) | 353 |
| MnlI | CCTC | 7 cut(s) | 65, 125, 178, 211, 215, 221, 278 |
| MroXI | GAANNNNTTC | 2 cut(s) | 82, 159 |
| MspA1I | CMGCKG | 2 cut(s) | 68, 356 |
| MspR9I | CCNGG | 1 cut(s) | 146 |
| MvaI | CCWGG | 1 cut(s) | 146 |
| MvnI | CGCG | 1 cut(s) | 300 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 362 |
| NdeII | GATC | 2 cut(s) | 23, 139 |
| NlaIII | CATG | 5 cut(s) | 37, 103, 124, 178, 205 |
| NmeAIII | GCCGAG | 1 cut(s) | 341 |
| PdmI | GAANNNNTTC | 2 cut(s) | 82, 159 |
| PkrI | GCNGC | 1 cut(s) | 355 |
| PleI | GAGTC | 1 cut(s) | 353 |
| PpsI | GAGTC | 1 cut(s) | 353 |
| Psp124BI | GAGCTC | 1 cut(s) | 264 |
| Psp6I | CCWGG | 1 cut(s) | 144 |
| PspGI | CCWGG | 1 cut(s) | 144 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 70, 102 |
| PsuI | RGATCY | 1 cut(s) | 23 |
| PvuII | CAGCTG | 1 cut(s) | 68 |
| SacI | GAGCTC | 1 cut(s) | 264 |
| SatI | GCNGC | 1 cut(s) | 354 |
| Sau3AI | GATC | 2 cut(s) | 23, 139 |
| SchI | GAGTC | 1 cut(s) | 353 |
| ScrFI | CCNGG | 1 cut(s) | 146 |
| SduI | GDGCHC | 1 cut(s) | 264 |
| SetI | ASST | 4 cut(s) | 70, 226, 264, 307 |
| SmlI | CTYRAG | 1 cut(s) | 257 |
| SmoI | CTYRAG | 1 cut(s) | 257 |
| SpeI | ACTAGT | 1 cut(s) | 80 |
| Sse9I | AATT | 1 cut(s) | 341 |
| SsiI | CCGC | 2 cut(s) | 298, 354 |
| SspMI | CTAG | 1 cut(s) | 81 |
| SstI | GAGCTC | 1 cut(s) | 264 |
| StyD4I | CCNGG | 1 cut(s) | 144 |
| TaaI | ACNGT | 3 cut(s) | 168, 182, 239 |
| TaqI | TCGA | 1 cut(s) | 284 |
| TasI | AATT | 1 cut(s) | 341 |
| TauI | GCSGC | 1 cut(s) | 356 |
| TscAI | CASTG | 1 cut(s) | 171 |
| TspDTI | ATGAA | 5 cut(s) | 44, 109, 116, 120, 218 |
| TspRI | CASTG | 1 cut(s) | 171 |
| XapI | RAATTY | 1 cut(s) | 341 |
| XmnI | GAANNNNTTC | 2 cut(s) | 82, 159 |
| XspI | CTAG | 1 cut(s) | 81 |