Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 26 - 86 | 4e-12 | Homeodomain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 415 |
| Acc36I | ACCTGC | 1 cut(s) | 415 |
| AciI | CCGC | 6 cut(s) | 275, 429, 594, 597, 777, 783 |
| AclWI | GGATC | 4 cut(s) | 179, 484, 555, 568 |
| AcsI | RAATTY | 1 cut(s) | 743 |
| AcuI | CTGAAG | 1 cut(s) | 405 |
| AfaI | GTAC | 8 cut(s) | 76, 194, 328, 353, 374, 538, 637, 643 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 734, 807 |
| AgsI | TTSAA | 1 cut(s) | 710 |
| AhlI | ACTAGT | 1 cut(s) | 638 |
| AjnI | CCWGG | 1 cut(s) | 699 |
| AluBI | AGCT | 7 cut(s) | 38, 121, 184, 425, 521, 807, 847 |
| AluI | AGCT | 7 cut(s) | 38, 121, 184, 425, 521, 807, 847 |
| Alw21I | GWGCWC | 1 cut(s) | 849 |
| Alw26I | GTCTC | 1 cut(s) | 182 |
| AlwI | GGATC | 4 cut(s) | 179, 484, 555, 568 |
| Ama87I | CYCGRG | 1 cut(s) | 246 |
| ApeKI | GCWGC | 2 cut(s) | 35, 780 |
| ApoI | RAATTY | 1 cut(s) | 743 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 266 |
| AspLEI | GCGC | 1 cut(s) | 830 |
| AspS9I | GGNCC | 1 cut(s) | 144 |
| AsuHPI | GGTGA | 2 cut(s) | 689, 749 |
| AvaI | CYCGRG | 1 cut(s) | 246 |
| AvaII | GGWCC | 1 cut(s) | 144 |
| BamHI | GGATCC | 1 cut(s) | 560 |
| BanII | GRGCYC | 1 cut(s) | 849 |
| Bbv12I | GWGCWC | 1 cut(s) | 849 |
| BbvI | GCAGC | 2 cut(s) | 47, 792 |
| BccI | CCATC | 3 cut(s) | 17, 75, 448 |
| BceAI | ACGGC | 2 cut(s) | 805, 880 |
| BciT130I | CCWGG | 1 cut(s) | 701 |
| BclI | TGATCA | 2 cut(s) | 97, 346 |
| BcoDI | GTCTC | 1 cut(s) | 182 |
| BcuI | ACTAGT | 1 cut(s) | 638 |
| BfaI | CTAG | 1 cut(s) | 639 |
| BfoI | RGCGCY | 1 cut(s) | 831 |
| BfuAI | ACCTGC | 1 cut(s) | 415 |
| BisI | GCNGC | 5 cut(s) | 36, 595, 778, 781, 784 |
| BlpI | GCTNAGC | 1 cut(s) | 848 |
| BlsI | GCNGC | 5 cut(s) | 37, 596, 779, 782, 785 |
| BmcAI | AGTACT | 2 cut(s) | 374, 643 |
| Bme1390I | CCNGG | 1 cut(s) | 701 |
| Bme18I | GGWCC | 1 cut(s) | 144 |
| BmeT110I | CYCGRG | 1 cut(s) | 246 |
| BmgT120I | GGNCC | 1 cut(s) | 144 |
| BmiI | GGNNCC | 4 cut(s) | 6, 146, 230, 562 |
| BmrFI | CCNGG | 1 cut(s) | 701 |
| BpmI | CTGGAG | 2 cut(s) | 164, 543 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 848 |
| BpuEI | CTTGAG | 2 cut(s) | 98, 863 |
| BsaBI | GATNNNNATC | 1 cut(s) | 107 |
| BsaJI | CCNNGG | 3 cut(s) | 54, 565, 771 |
| BsaWI | WCCGGW | 1 cut(s) | 800 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 359, 389 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 734, 807 |
| Bse1I | ACTGG | 2 cut(s) | 230, 538 |
| Bse8I | GATNNNNATC | 1 cut(s) | 107 |
| BseBI | CCWGG | 1 cut(s) | 701 |
| BseDI | CCNNGG | 3 cut(s) | 54, 565, 771 |
| BseGI | GGATG | 3 cut(s) | 28, 283, 620 |
| BseJI | GATNNNNATC | 1 cut(s) | 107 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 734, 807 |
| BseMII | CTCAG | 3 cut(s) | 9, 531, 862 |
| BseNI | ACTGG | 2 cut(s) | 230, 538 |
| BseXI | GCAGC | 2 cut(s) | 47, 792 |
| BseYI | CCCAGC | 2 cut(s) | 38, 807 |
| BsgI | GTGCAG | 2 cut(s) | 174, 387 |
| BsiHKAI | GWGCWC | 1 cut(s) | 849 |
| BsiHKCI | CYCGRG | 1 cut(s) | 246 |
| BsiSI | CCGG | 1 cut(s) | 801 |
| BslFI | GGGAC | 1 cut(s) | 130 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 734, 807 |
| BsmAI | GTCTC | 1 cut(s) | 182 |
| BsmFI | GGGAC | 1 cut(s) | 130 |
| BsmI | GAATGC | 1 cut(s) | 322 |
| BsoBI | CYCGRG | 1 cut(s) | 246 |
| Bsp1286I | GDGCHC | 1 cut(s) | 849 |
| Bsp143I | GATC | 7 cut(s) | 97, 171, 201, 299, 346, 476, 560 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 848 |
| Bsp19I | CCATGG | 1 cut(s) | 54 |
| BspACI | CCGC | 6 cut(s) | 275, 429, 594, 597, 777, 783 |
| BspCNI | CTCAG | 3 cut(s) | 10, 530, 861 |
| BspLI | GGNNCC | 4 cut(s) | 6, 146, 230, 562 |
| BspMI | ACCTGC | 1 cut(s) | 415 |
| BspPI | GGATC | 4 cut(s) | 179, 484, 555, 568 |
| BsrI | ACTGG | 2 cut(s) | 230, 538 |
| BssECI | CCNNGG | 3 cut(s) | 54, 565, 771 |
| BssMI | GATC | 7 cut(s) | 97, 171, 201, 299, 346, 476, 560 |
| BssT1I | CCWWGG | 2 cut(s) | 54, 565 |
| Bst2UI | CCWGG | 1 cut(s) | 701 |
| Bst4CI | ACNGT | 5 cut(s) | 192, 464, 723, 737, 824 |
| Bst6I | CTCTTC | 2 cut(s) | 257, 488 |
| BstC8I | GCNNGC | 3 cut(s) | 65, 427, 832 |
| BstDEI | CTNAG | 3 cut(s) | 18, 517, 848 |
| BstDSI | CCRYGG | 1 cut(s) | 54 |
| BstF5I | GGATG | 3 cut(s) | 28, 283, 620 |
| BstH2I | RGCGCY | 1 cut(s) | 831 |
| BstHHI | GCGC | 1 cut(s) | 830 |
| BstKTI | GATC | 7 cut(s) | 100, 174, 204, 302, 349, 479, 563 |
| BstMAI | GTCTC | 1 cut(s) | 182 |
| BstMBI | GATC | 7 cut(s) | 97, 171, 201, 299, 346, 476, 560 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 69, 422, 783, 789 |
| BstNI | CCWGG | 1 cut(s) | 701 |
| BstSCI | CCNGG | 1 cut(s) | 699 |
| BstV1I | GCAGC | 2 cut(s) | 47, 792 |
| BstX2I | RGATCY | 3 cut(s) | 171, 476, 560 |
| BstYI | RGATCY | 3 cut(s) | 171, 476, 560 |
| BtgI | CCRYGG | 1 cut(s) | 54 |
| BtsCI | GGATG | 3 cut(s) | 28, 283, 620 |
| BtsI | GCAGTG | 1 cut(s) | 270 |
| BtsIMutI | CAGTG | 3 cut(s) | 270, 719, 886 |
| BveI | ACCTGC | 1 cut(s) | 415 |
| Cac8I | GCNNGC | 3 cut(s) | 65, 427, 832 |
| CfoI | GCGC | 1 cut(s) | 830 |
| Cfr13I | GGNCC | 1 cut(s) | 144 |
| Csp6I | GTAC | 8 cut(s) | 75, 193, 327, 352, 373, 537, 636, 642 |
| CviQI | GTAC | 8 cut(s) | 75, 193, 327, 352, 373, 537, 636, 642 |
| DdeI | CTNAG | 3 cut(s) | 18, 517, 848 |
| DpnI | GATC | 7 cut(s) | 99, 173, 203, 301, 348, 478, 562 |
| DpnII | GATC | 7 cut(s) | 97, 171, 201, 299, 346, 476, 560 |
| Eam1104I | CTCTTC | 2 cut(s) | 257, 488 |
| EarI | CTCTTC | 2 cut(s) | 257, 488 |
| Ecl136II | GAGCTC | 1 cut(s) | 847 |
| Eco130I | CCWWGG | 2 cut(s) | 54, 565 |
| Eco24I | GRGCYC | 1 cut(s) | 849 |
| Eco47I | GGWCC | 1 cut(s) | 144 |
| Eco53kI | GAGCTC | 1 cut(s) | 847 |
| Eco57I | CTGAAG | 1 cut(s) | 405 |
| Eco88I | CYCGRG | 1 cut(s) | 246 |
| EcoICRI | GAGCTC | 1 cut(s) | 847 |
| EcoO109I | RGGNCCY | 1 cut(s) | 144 |
| EcoRI | GAATTC | 1 cut(s) | 743 |
| EcoRII | CCWGG | 1 cut(s) | 699 |
| EcoT14I | CCWWGG | 2 cut(s) | 54, 565 |
| EcoT38I | GRGCYC | 1 cut(s) | 849 |
| ErhI | CCWWGG | 2 cut(s) | 54, 565 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 203, 235 |
| FaqI | GGGAC | 1 cut(s) | 130 |
| FbaI | TGATCA | 2 cut(s) | 97, 346 |
| Fnu4HI | GCNGC | 5 cut(s) | 36, 595, 778, 781, 784 |
| FokI | GGATG | 3 cut(s) | 35, 290, 607 |
| FriOI | GRGCYC | 1 cut(s) | 849 |
| Fsp4HI | GCNGC | 5 cut(s) | 36, 595, 778, 781, 784 |
| FspBI | CTAG | 1 cut(s) | 639 |
| GlaI | GCGC | 1 cut(s) | 829 |
| GluI | GCNGC | 5 cut(s) | 36, 595, 778, 781, 784 |
| GsaI | CCCAGC | 2 cut(s) | 42, 811 |
| GsuI | CTGGAG | 2 cut(s) | 164, 543 |
| HaeII | RGCGCY | 1 cut(s) | 831 |
| HapII | CCGG | 1 cut(s) | 801 |
| HhaI | GCGC | 1 cut(s) | 830 |
| Hin6I | GCGC | 1 cut(s) | 828 |
| HinP1I | GCGC | 1 cut(s) | 828 |
| HincII | GTYRAC | 1 cut(s) | 604 |
| HindII | GTYRAC | 1 cut(s) | 604 |
| HinfI | GANTC | 3 cut(s) | 85, 108, 163 |
| HpaII | CCGG | 1 cut(s) | 801 |
| HphI | GGTGA | 2 cut(s) | 689, 749 |
| Hpy166II | GTNNAC | 2 cut(s) | 270, 604 |
| Hpy188I | TCNGA | 3 cut(s) | 102, 168, 772 |
| Hpy188III | TCNNGA | 3 cut(s) | 232, 248, 760 |
| Hpy8I | GTNNAC | 2 cut(s) | 270, 604 |
| HpyAV | CCTTC | 2 cut(s) | 521, 682 |
| HpyCH4III | ACNGT | 5 cut(s) | 192, 464, 723, 737, 824 |
| HpyCH4IV | ACGT | 1 cut(s) | 216 |
| HpyCH4V | TGCA | 5 cut(s) | 63, 155, 295, 404, 733 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 69, 422, 783, 789 |
| HpyF3I | CTNAG | 3 cut(s) | 18, 517, 848 |
| HpySE526I | ACGT | 1 cut(s) | 216 |
| HspAI | GCGC | 1 cut(s) | 828 |
| Ksp22I | TGATCA | 2 cut(s) | 97, 346 |
| Kzo9I | GATC | 7 cut(s) | 97, 171, 201, 299, 346, 476, 560 |
| LmnI | GCTCC | 2 cut(s) | 4, 118 |
| Lsp1109I | GCAGC | 2 cut(s) | 47, 792 |
| MaeI | CTAG | 1 cut(s) | 639 |
| MaeII | ACGT | 1 cut(s) | 216 |
| MaeIII | GTNAC | 2 cut(s) | 569, 815 |
| MalI | GATC | 7 cut(s) | 99, 173, 203, 301, 348, 478, 562 |
| MboI | GATC | 7 cut(s) | 97, 171, 201, 299, 346, 476, 560 |
| MboII | GAAGA | 9 cut(s) | 211, 271, 274, 390, 411, 505, 698, 701, 759 |
| MflI | RGATCY | 3 cut(s) | 171, 476, 560 |
| MhlI | GDGCHC | 1 cut(s) | 849 |
| MluCI | AATT | 5 cut(s) | 322, 331, 574, 743, 880 |
| MlyI | GAGTC | 1 cut(s) | 79 |
| MmeI | TCCRAC | 1 cut(s) | 402 |
| MroXI | GAANNNNTTC | 1 cut(s) | 266 |
| MseI | TTAA | 1 cut(s) | 444 |
| MslI | CAYNNNNRTG | 1 cut(s) | 359 |
| MspA1I | CMGCKG | 5 cut(s) | 38, 184, 425, 521, 783 |
| MspI | CCGG | 1 cut(s) | 801 |
| MspR9I | CCNGG | 1 cut(s) | 701 |
| Mva1269I | GAATGC | 1 cut(s) | 322 |
| MvaI | CCWGG | 1 cut(s) | 701 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 69, 422, 783, 789 |
| NcoI | CCATGG | 1 cut(s) | 54 |
| NdeII | GATC | 7 cut(s) | 97, 171, 201, 299, 346, 476, 560 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 146, 230, 562 |
| NmuCI | GTSAC | 1 cut(s) | 569 |
| PaqCI | CACCTGC | 1 cut(s) | 415 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 201 |
| PctI | GAATGC | 1 cut(s) | 322 |
| PdmI | GAANNNNTTC | 1 cut(s) | 266 |
| PfeI | GAWTC | 2 cut(s) | 108, 163 |
| PkrI | GCNGC | 5 cut(s) | 37, 596, 779, 782, 785 |
| PleI | GAGTC | 1 cut(s) | 79 |
| PpsI | GAGTC | 1 cut(s) | 79 |
| PpuMI | RGGWCCY | 1 cut(s) | 144 |
| Psp124BI | GAGCTC | 1 cut(s) | 849 |
| Psp5II | RGGWCCY | 1 cut(s) | 144 |
| Psp6I | CCWGG | 1 cut(s) | 699 |
| PspFI | CCCAGC | 2 cut(s) | 38, 807 |
| PspGI | CCWGG | 1 cut(s) | 699 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 146, 230, 562 |
| PspPI | GGNCC | 1 cut(s) | 144 |
| PspPPI | RGGWCCY | 1 cut(s) | 144 |
| PsrI | GAACNNNNNNTAC | 6 cut(s) | 206, 238, 356, 388, 523, 555 |
| PsuI | RGATCY | 3 cut(s) | 171, 476, 560 |
| PvuII | CAGCTG | 4 cut(s) | 38, 184, 425, 521 |
| RsaI | GTAC | 8 cut(s) | 76, 194, 328, 353, 374, 538, 637, 643 |
| RsaNI | GTAC | 8 cut(s) | 75, 193, 327, 352, 373, 537, 636, 642 |
| RseI | CAYNNNNRTG | 1 cut(s) | 359 |
| SacI | GAGCTC | 1 cut(s) | 849 |
| SaqAI | TTAA | 1 cut(s) | 444 |
| SatI | GCNGC | 5 cut(s) | 36, 595, 778, 781, 784 |
| Sau3AI | GATC | 7 cut(s) | 97, 171, 201, 299, 346, 476, 560 |
| Sau96I | GGNCC | 1 cut(s) | 144 |
| ScaI | AGTACT | 2 cut(s) | 374, 643 |
| SchI | GAGTC | 1 cut(s) | 79 |
| ScrFI | CCNGG | 1 cut(s) | 701 |
| SduI | GDGCHC | 1 cut(s) | 849 |
| SinI | GGWCC | 1 cut(s) | 144 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 359 |
| SmlI | CTYRAG | 2 cut(s) | 113, 842 |
| SmoI | CTYRAG | 2 cut(s) | 113, 842 |
| SpeI | ACTAGT | 1 cut(s) | 638 |
| Sse9I | AATT | 5 cut(s) | 322, 331, 574, 743, 880 |
| SsiI | CCGC | 6 cut(s) | 275, 429, 594, 597, 777, 783 |
| SspMI | CTAG | 1 cut(s) | 639 |
| SstI | GAGCTC | 1 cut(s) | 849 |
| StyD4I | CCNGG | 1 cut(s) | 699 |
| StyI | CCWWGG | 2 cut(s) | 54, 565 |
| TaaI | ACNGT | 5 cut(s) | 192, 464, 723, 737, 824 |
| TaiI | ACGT | 1 cut(s) | 219 |
| TaqI | TCGA | 1 cut(s) | 204 |
| TasI | AATT | 5 cut(s) | 322, 331, 574, 743, 880 |
| TatI | WGTACW | 4 cut(s) | 326, 351, 372, 641 |
| TauI | GCSGC | 3 cut(s) | 597, 780, 786 |
| TfiI | GAWTC | 2 cut(s) | 108, 163 |
| Tru1I | TTAA | 1 cut(s) | 444 |
| Tru9I | TTAA | 1 cut(s) | 444 |
| TscAI | CASTG | 2 cut(s) | 277, 726 |
| TseFI | GTSAC | 1 cut(s) | 569 |
| TseI | GCWGC | 2 cut(s) | 35, 780 |
| Tsp45I | GTSAC | 1 cut(s) | 569 |
| TspDTI | ATGAA | 6 cut(s) | 272, 371, 377, 497, 664, 674 |
| TspRI | CASTG | 2 cut(s) | 277, 726 |
| VpaK11BI | GGWCC | 1 cut(s) | 144 |
| XapI | RAATTY | 1 cut(s) | 743 |
| XmnI | GAANNNNTTC | 1 cut(s) | 266 |
| XspI | CTAG | 1 cut(s) | 639 |
| ZrmI | AGTACT | 2 cut(s) | 374, 643 |