Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PALP | PF00291 | 78 - 355 | 7e-66 | Pyridoxal-phosphate dependent enzyme |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 431 |
| AccBSI | CCGCTC | 2 cut(s) | 548, 835 |
| AccI | GTMKAC | 1 cut(s) | 264 |
| AccIII | TCCGGA | 1 cut(s) | 848 |
| AciI | CCGC | 6 cut(s) | 148, 282, 305, 548, 835, 1052 |
| AclWI | GGATC | 3 cut(s) | 452, 560, 667 |
| AcoI | YGGCCR | 1 cut(s) | 939 |
| AcsI | RAATTY | 1 cut(s) | 628 |
| AfaI | GTAC | 2 cut(s) | 760, 1095 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 147, 431, 575, 1070 |
| AgsI | TTSAA | 7 cut(s) | 79, 422, 518, 583, 644, 935, 958 |
| AhlI | ACTAGT | 1 cut(s) | 428 |
| AjnI | CCWGG | 3 cut(s) | 400, 859, 941 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 398, 430 |
| AluBI | AGCT | 9 cut(s) | 82, 104, 205, 313, 602, 929, 992, 1001, 1068 |
| AluI | AGCT | 9 cut(s) | 82, 104, 205, 313, 602, 929, 992, 1001, 1068 |
| Alw21I | GWGCWC | 2 cut(s) | 106, 207 |
| AlwI | GGATC | 3 cut(s) | 452, 560, 667 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 773, 992, 1004 |
| Ama87I | CYCGRG | 1 cut(s) | 314 |
| Aor13HI | TCCGGA | 1 cut(s) | 848 |
| AoxI | GGCC | 2 cut(s) | 692, 939 |
| ApeKI | GCWGC | 7 cut(s) | 464, 740, 992, 995, 998, 1001, 1004 |
| ApoI | RAATTY | 1 cut(s) | 628 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 302, 334 |
| AseI | ATTAAT | 1 cut(s) | 392 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1119 |
| AspS9I | GGNCC | 2 cut(s) | 150, 692 |
| AsuC2I | CCSGG | 1 cut(s) | 691 |
| AsuHPI | GGTGA | 1 cut(s) | 1085 |
| AvaI | CYCGRG | 1 cut(s) | 314 |
| AvaII | GGWCC | 1 cut(s) | 150 |
| BalI | TGGCCA | 1 cut(s) | 941 |
| BanII | GRGCYC | 2 cut(s) | 106, 207 |
| BbsI | GAAGAC | 1 cut(s) | 1030 |
| Bbv12I | GWGCWC | 2 cut(s) | 106, 207 |
| BbvI | GCAGC | 7 cut(s) | 451, 727, 979, 982, 988, 991, 1010 |
| BceAI | ACGGC | 1 cut(s) | 74 |
| BciT130I | CCWGG | 3 cut(s) | 402, 861, 943 |
| BciVI | GTATCC | 1 cut(s) | 703 |
| BcnI | CCSGG | 1 cut(s) | 691 |
| BcuI | ACTAGT | 1 cut(s) | 428 |
| BfaI | CTAG | 2 cut(s) | 429, 1065 |
| BfmI | CTRYAG | 2 cut(s) | 358, 996 |
| BfuI | GTATCC | 1 cut(s) | 703 |
| BisI | GCNGC | 8 cut(s) | 306, 465, 741, 993, 996, 999, 1002, 1005 |
| BlsI | GCNGC | 8 cut(s) | 307, 466, 742, 994, 997, 1000, 1003, 1006 |
| Bme1390I | CCNGG | 4 cut(s) | 402, 691, 861, 943 |
| Bme18I | GGWCC | 1 cut(s) | 150 |
| BmeT110I | CYCGRG | 1 cut(s) | 314 |
| BmgT120I | GGNCC | 2 cut(s) | 150, 692 |
| BmiI | GGNNCC | 2 cut(s) | 152, 327 |
| BmrFI | CCNGG | 4 cut(s) | 402, 691, 861, 943 |
| BmrI | ACTGGG | 2 cut(s) | 232, 783 |
| BmsI | GCATC | 3 cut(s) | 80, 512, 1119 |
| BmuI | ACTGGG | 2 cut(s) | 232, 783 |
| BpiI | GAAGAC | 1 cut(s) | 1030 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 93, 125 |
| BpuMI | CCSGG | 1 cut(s) | 691 |
| Bsa29I | ATCGAT | 1 cut(s) | 1106 |
| BsaAI | YACGTR | 1 cut(s) | 868 |
| BsaBI | GATNNNNATC | 1 cut(s) | 394 |
| BsaJI | CCNNGG | 5 cut(s) | 56, 225, 258, 401, 714 |
| BsaWI | WCCGGW | 1 cut(s) | 848 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 276, 306, 537, 567 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 147, 431, 575, 1070 |
| Bse1I | ACTGG | 3 cut(s) | 238, 757, 778 |
| Bse8I | GATNNNNATC | 1 cut(s) | 394 |
| BseAI | TCCGGA | 1 cut(s) | 848 |
| BseBI | CCWGG | 3 cut(s) | 402, 861, 943 |
| BseCI | ATCGAT | 1 cut(s) | 1106 |
| BseDI | CCNNGG | 5 cut(s) | 56, 225, 258, 401, 714 |
| BseGI | GGATG | 3 cut(s) | 71, 89, 503 |
| BseJI | GATNNNNATC | 1 cut(s) | 394 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 147, 431, 575, 1070 |
| BseMII | CTCAG | 2 cut(s) | 631, 1020 |
| BseNI | ACTGG | 3 cut(s) | 238, 757, 778 |
| BseRI | GAGGAG | 3 cut(s) | 122, 166, 169 |
| BseXI | GCAGC | 7 cut(s) | 451, 727, 979, 982, 988, 991, 1010 |
| BshFI | GGCC | 2 cut(s) | 694, 941 |
| BshVI | ATCGAT | 1 cut(s) | 1106 |
| BsiHKAI | GWGCWC | 2 cut(s) | 106, 207 |
| BsiHKCI | CYCGRG | 1 cut(s) | 314 |
| BsiSI | CCGG | 2 cut(s) | 690, 849 |
| BslFI | GGGAC | 1 cut(s) | 136 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 147, 431, 575, 1070 |
| BsmFI | GGGAC | 1 cut(s) | 136 |
| BsmI | GAATGC | 1 cut(s) | 1039 |
| BsnI | GGCC | 2 cut(s) | 694, 941 |
| BsoBI | CYCGRG | 1 cut(s) | 314 |
| Bsp1286I | GDGCHC | 2 cut(s) | 106, 207 |
| Bsp13I | TCCGGA | 1 cut(s) | 848 |
| Bsp143I | GATC | 4 cut(s) | 444, 565, 672, 843 |
| Bsp19I | CCATGG | 2 cut(s) | 258, 714 |
| BspACI | CCGC | 6 cut(s) | 148, 282, 305, 548, 835, 1052 |
| BspANI | GGCC | 2 cut(s) | 694, 941 |
| BspCNI | CTCAG | 2 cut(s) | 630, 1021 |
| BspDI | ATCGAT | 1 cut(s) | 1106 |
| BspEI | TCCGGA | 1 cut(s) | 848 |
| BspLI | GGNNCC | 2 cut(s) | 152, 327 |
| BspMAI | CTGCAG | 1 cut(s) | 1000 |
| BspPI | GGATC | 3 cut(s) | 452, 560, 667 |
| BspQI | GCTCTTC | 1 cut(s) | 111 |
| BsrBI | CCGCTC | 2 cut(s) | 548, 835 |
| BsrI | ACTGG | 3 cut(s) | 238, 757, 778 |
| BssECI | CCNNGG | 5 cut(s) | 56, 225, 258, 401, 714 |
| BssMI | GATC | 4 cut(s) | 444, 565, 672, 843 |
| BssNAI | GTATAC | 1 cut(s) | 265 |
| BssT1I | CCWWGG | 2 cut(s) | 258, 714 |
| Bst1107I | GTATAC | 1 cut(s) | 265 |
| Bst2UI | CCWGG | 3 cut(s) | 402, 861, 943 |
| Bst4CI | ACNGT | 4 cut(s) | 214, 648, 763, 1093 |
| Bst6I | CTCTTC | 3 cut(s) | 39, 111, 1103 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1004 |
| BstBAI | YACGTR | 1 cut(s) | 868 |
| BstC8I | GCNNGC | 2 cut(s) | 501, 623 |
| BstDEI | CTNAG | 3 cut(s) | 144, 617, 1029 |
| BstDSI | CCRYGG | 3 cut(s) | 56, 258, 714 |
| BstEII | GGTNACC | 1 cut(s) | 913 |
| BstF5I | GGATG | 3 cut(s) | 71, 89, 503 |
| BstKTI | GATC | 4 cut(s) | 447, 568, 675, 846 |
| BstMBI | GATC | 4 cut(s) | 444, 565, 672, 843 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 302, 461, 545, 998, 1001, 1004 |
| BstNI | CCWGG | 3 cut(s) | 402, 861, 943 |
| BstPI | GGTNACC | 1 cut(s) | 913 |
| BstSCI | CCNGG | 4 cut(s) | 400, 689, 859, 941 |
| BstSFI | CTRYAG | 2 cut(s) | 358, 996 |
| BstV1I | GCAGC | 7 cut(s) | 451, 727, 979, 982, 988, 991, 1010 |
| BstV2I | GAAGAC | 1 cut(s) | 1030 |
| BstX2I | RGATCY | 2 cut(s) | 565, 672 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 245, 702 |
| BstYI | RGATCY | 2 cut(s) | 565, 672 |
| BstZ17I | GTATAC | 1 cut(s) | 265 |
| Bsu15I | ATCGAT | 1 cut(s) | 1106 |
| BsuI | GTATCC | 1 cut(s) | 703 |
| BsuRI | GGCC | 2 cut(s) | 694, 941 |
| BsuTUI | ATCGAT | 1 cut(s) | 1106 |
| BtgI | CCRYGG | 3 cut(s) | 56, 258, 714 |
| BtgZI | GCGATG | 1 cut(s) | 806 |
| BtsCI | GGATG | 3 cut(s) | 71, 89, 503 |
| BtsIMutI | CAGTG | 2 cut(s) | 210, 771 |
| Cac8I | GCNNGC | 2 cut(s) | 501, 623 |
| CaiI | CAGNNNCTG | 3 cut(s) | 773, 992, 1004 |
| Cfr13I | GGNCC | 2 cut(s) | 150, 692 |
| ClaI | ATCGAT | 1 cut(s) | 1106 |
| Csp6I | GTAC | 2 cut(s) | 759, 1094 |
| CviAII | CATG | 6 cut(s) | 121, 259, 364, 496, 715, 1140 |
| CviQI | GTAC | 2 cut(s) | 759, 1094 |
| DdeI | CTNAG | 3 cut(s) | 144, 617, 1029 |
| DpnI | GATC | 4 cut(s) | 446, 567, 674, 845 |
| DpnII | GATC | 4 cut(s) | 444, 565, 672, 843 |
| EaeI | YGGCCR | 1 cut(s) | 939 |
| Eam1104I | CTCTTC | 3 cut(s) | 39, 111, 1103 |
| EarI | CTCTTC | 3 cut(s) | 39, 111, 1103 |
| Ecl136II | GAGCTC | 2 cut(s) | 104, 205 |
| Eco130I | CCWWGG | 2 cut(s) | 258, 714 |
| Eco24I | GRGCYC | 2 cut(s) | 106, 207 |
| Eco32I | GATATC | 1 cut(s) | 369 |
| Eco47I | GGWCC | 1 cut(s) | 150 |
| Eco53kI | GAGCTC | 2 cut(s) | 104, 205 |
| Eco88I | CYCGRG | 1 cut(s) | 314 |
| Eco91I | GGTNACC | 1 cut(s) | 913 |
| EcoICRI | GAGCTC | 2 cut(s) | 104, 205 |
| EcoO65I | GGTNACC | 1 cut(s) | 913 |
| EcoRII | CCWGG | 3 cut(s) | 400, 859, 941 |
| EcoRV | GATATC | 1 cut(s) | 369 |
| EcoT14I | CCWWGG | 2 cut(s) | 258, 714 |
| EcoT38I | GRGCYC | 2 cut(s) | 106, 207 |
| ErhI | CCWWGG | 2 cut(s) | 258, 714 |
| FaeI | CATG | 6 cut(s) | 124, 262, 367, 499, 718, 1143 |
| FaqI | GGGAC | 1 cut(s) | 136 |
| FatI | CATG | 6 cut(s) | 120, 258, 363, 495, 714, 1139 |
| FblI | GTMKAC | 1 cut(s) | 264 |
| Fnu4HI | GCNGC | 8 cut(s) | 306, 465, 741, 993, 996, 999, 1002, 1005 |
| FokI | GGATG | 3 cut(s) | 58, 76, 490 |
| FriOI | GRGCYC | 2 cut(s) | 106, 207 |
| Fsp4HI | GCNGC | 8 cut(s) | 306, 465, 741, 993, 996, 999, 1002, 1005 |
| FspBI | CTAG | 2 cut(s) | 429, 1065 |
| GluI | GCNGC | 8 cut(s) | 306, 465, 741, 993, 996, 999, 1002, 1005 |
| HaeIII | GGCC | 2 cut(s) | 694, 941 |
| HapII | CCGG | 2 cut(s) | 690, 849 |
| Hin1II | CATG | 6 cut(s) | 124, 262, 367, 499, 718, 1143 |
| HincII | GTYRAC | 1 cut(s) | 727 |
| HindII | GTYRAC | 1 cut(s) | 727 |
| HindIII | AAGCTT | 1 cut(s) | 80 |
| HinfI | GANTC | 2 cut(s) | 317, 526 |
| HpaII | CCGG | 2 cut(s) | 690, 849 |
| HphI | GGTGA | 1 cut(s) | 1085 |
| Hpy166II | GTNNAC | 3 cut(s) | 187, 265, 727 |
| Hpy188I | TCNGA | 2 cut(s) | 449, 1125 |
| Hpy188III | TCNNGA | 4 cut(s) | 515, 569, 849, 987 |
| Hpy8I | GTNNAC | 3 cut(s) | 187, 265, 727 |
| HpyAV | CCTTC | 5 cut(s) | 85, 516, 568, 952, 956 |
| HpyCH4III | ACNGT | 4 cut(s) | 214, 648, 763, 1093 |
| HpyCH4IV | ACGT | 3 cut(s) | 231, 867, 885 |
| HpyCH4V | TGCA | 6 cut(s) | 377, 503, 662, 668, 998, 1007 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 302, 461, 545, 998, 1001, 1004 |
| HpyF3I | CTNAG | 3 cut(s) | 144, 617, 1029 |
| HpySE526I | ACGT | 3 cut(s) | 231, 867, 885 |
| Hsp92II | CATG | 6 cut(s) | 124, 262, 367, 499, 718, 1143 |
| Kpn2I | TCCGGA | 1 cut(s) | 848 |
| Kzo9I | GATC | 4 cut(s) | 444, 565, 672, 843 |
| LguI | GCTCTTC | 1 cut(s) | 111 |
| LmnI | GCTCC | 3 cut(s) | 101, 545, 989 |
| Lsp1109I | GCAGC | 7 cut(s) | 451, 727, 979, 982, 988, 991, 1010 |
| LweI | GCATC | 3 cut(s) | 80, 512, 1119 |
| MaeI | CTAG | 2 cut(s) | 429, 1065 |
| MaeII | ACGT | 3 cut(s) | 231, 867, 885 |
| MaeIII | GTNAC | 7 cut(s) | 232, 490, 531, 763, 779, 863, 913 |
| MalI | GATC | 4 cut(s) | 446, 567, 674, 845 |
| MbiI | CCGCTC | 2 cut(s) | 548, 835 |
| MboI | GATC | 4 cut(s) | 444, 565, 672, 843 |
| MboII | GAAGA | 8 cut(s) | 26, 41, 98, 418, 1035, 1090, 1127, 1138 |
| MflI | RGATCY | 2 cut(s) | 565, 672 |
| MhlI | GDGCHC | 2 cut(s) | 106, 207 |
| MlsI | TGGCCA | 1 cut(s) | 941 |
| MluCI | AATT | 4 cut(s) | 351, 450, 609, 628 |
| MluNI | TGGCCA | 1 cut(s) | 941 |
| MlyI | GAGTC | 1 cut(s) | 326 |
| MmeI | TCCRAC | 1 cut(s) | 1112 |
| Mox20I | TGGCCA | 1 cut(s) | 941 |
| MroI | TCCGGA | 1 cut(s) | 848 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1119 |
| MscI | TGGCCA | 1 cut(s) | 941 |
| MseI | TTAA | 2 cut(s) | 392, 888 |
| Msp20I | TGGCCA | 1 cut(s) | 941 |
| MspA1I | CMGCKG | 1 cut(s) | 1001 |
| MspI | CCGG | 2 cut(s) | 690, 849 |
| MspR9I | CCNGG | 4 cut(s) | 402, 691, 861, 943 |
| Mva1269I | GAATGC | 1 cut(s) | 1039 |
| MvaI | CCWGG | 3 cut(s) | 402, 861, 943 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 302, 461, 545, 998, 1001, 1004 |
| NciI | CCSGG | 1 cut(s) | 691 |
| NcoI | CCATGG | 2 cut(s) | 258, 714 |
| NdeII | GATC | 4 cut(s) | 444, 565, 672, 843 |
| NlaIII | CATG | 6 cut(s) | 124, 262, 367, 499, 718, 1143 |
| NlaIV | GGNNCC | 2 cut(s) | 152, 327 |
| NmeAIII | GCCGAG | 1 cut(s) | 250 |
| NmuCI | GTSAC | 1 cut(s) | 490 |
| PaeR7I | CTCGAG | 1 cut(s) | 314 |
| PciSI | GCTCTTC | 1 cut(s) | 111 |
| PctI | GAATGC | 1 cut(s) | 1039 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1119 |
| PfeI | GAWTC | 1 cut(s) | 526 |
| PflFI | GACNNNGTC | 1 cut(s) | 212 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 431 |
| PkrI | GCNGC | 8 cut(s) | 307, 466, 742, 994, 997, 1000, 1003, 1006 |
| PleI | GAGTC | 1 cut(s) | 325 |
| PpsI | GAGTC | 1 cut(s) | 325 |
| Ppu21I | YACGTR | 1 cut(s) | 868 |
| PshBI | ATTAAT | 1 cut(s) | 392 |
| Psp124BI | GAGCTC | 2 cut(s) | 106, 207 |
| Psp6I | CCWGG | 3 cut(s) | 400, 859, 941 |
| PspEI | GGTNACC | 1 cut(s) | 913 |
| PspGI | CCWGG | 3 cut(s) | 400, 859, 941 |
| PspN4I | GGNNCC | 2 cut(s) | 152, 327 |
| PspPI | GGNCC | 2 cut(s) | 150, 692 |
| PspXI | VCTCGAGB | 1 cut(s) | 314 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 742, 774 |
| PstI | CTGCAG | 1 cut(s) | 1000 |
| PstNI | CAGNNNCTG | 3 cut(s) | 773, 992, 1004 |
| PsuI | RGATCY | 2 cut(s) | 565, 672 |
| PsyI | GACNNNGTC | 1 cut(s) | 212 |
| PvuII | CAGCTG | 1 cut(s) | 1001 |
| RsaI | GTAC | 2 cut(s) | 760, 1095 |
| RsaNI | GTAC | 2 cut(s) | 759, 1094 |
| SacI | GAGCTC | 2 cut(s) | 106, 207 |
| SapI | GCTCTTC | 1 cut(s) | 111 |
| SaqAI | TTAA | 2 cut(s) | 392, 888 |
| SatI | GCNGC | 8 cut(s) | 306, 465, 741, 993, 996, 999, 1002, 1005 |
| Sau3AI | GATC | 4 cut(s) | 444, 565, 672, 843 |
| Sau96I | GGNCC | 2 cut(s) | 150, 692 |
| SchI | GAGTC | 1 cut(s) | 326 |
| ScrFI | CCNGG | 4 cut(s) | 402, 691, 861, 943 |
| SduI | GDGCHC | 2 cut(s) | 106, 207 |
| SfaNI | GCATC | 3 cut(s) | 80, 512, 1119 |
| SfcI | CTRYAG | 2 cut(s) | 358, 996 |
| Sfr274I | CTCGAG | 1 cut(s) | 314 |
| SinI | GGWCC | 1 cut(s) | 150 |
| SlaI | CTCGAG | 1 cut(s) | 314 |
| SmlI | CTYRAG | 1 cut(s) | 314 |
| SmoI | CTYRAG | 1 cut(s) | 314 |
| SpeI | ACTAGT | 1 cut(s) | 428 |
| Sse9I | AATT | 4 cut(s) | 351, 450, 609, 628 |
| SsiI | CCGC | 6 cut(s) | 148, 282, 305, 548, 835, 1052 |
| SspI | AATATT | 2 cut(s) | 220, 301 |
| SspMI | CTAG | 2 cut(s) | 429, 1065 |
| SstI | GAGCTC | 2 cut(s) | 106, 207 |
| StyD4I | CCNGG | 4 cut(s) | 400, 689, 859, 941 |
| StyI | CCWWGG | 2 cut(s) | 258, 714 |
| TaaI | ACNGT | 4 cut(s) | 214, 648, 763, 1093 |
| TaiI | ACGT | 3 cut(s) | 234, 870, 888 |
| TaqI | TCGA | 3 cut(s) | 207, 315, 1106 |
| TasI | AATT | 4 cut(s) | 351, 450, 609, 628 |
| TatI | WGTACW | 1 cut(s) | 1093 |
| TauI | GCSGC | 1 cut(s) | 308 |
| TfiI | GAWTC | 1 cut(s) | 526 |
| Tru1I | TTAA | 2 cut(s) | 392, 888 |
| Tru9I | TTAA | 2 cut(s) | 392, 888 |
| TscAI | CASTG | 2 cut(s) | 217, 778 |
| TseFI | GTSAC | 1 cut(s) | 490 |
| TseI | GCWGC | 7 cut(s) | 464, 740, 992, 995, 998, 1001, 1004 |
| Tsp45I | GTSAC | 1 cut(s) | 490 |
| TspDTI | ATGAA | 6 cut(s) | 621, 809, 915, 939, 972, 1128 |
| TspRI | CASTG | 2 cut(s) | 217, 778 |
| Tth111I | GACNNNGTC | 1 cut(s) | 212 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 431 |
| VpaK11BI | GGWCC | 1 cut(s) | 150 |
| VspI | ATTAAT | 1 cut(s) | 392 |
| XapI | RAATTY | 1 cut(s) | 628 |
| XhoI | CTCGAG | 1 cut(s) | 314 |
| XmiI | GTMKAC | 1 cut(s) | 264 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1119 |
| XspI | CTAG | 2 cut(s) | 429, 1065 |