Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Forward (+)

61665383 .. 61666095

Gene Structure 713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00268610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAGAACTAGGTGGATTCCCACTACGGACCATATAAGAATCCTCAAGGATCTTTTCTACAACAAGGGAGTTAGGTCCCCAACAATGGAGCGATTCGGAGGATCCGTTTCCACTGAGTTTGTTTGGCCGGATCGAGGTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGACTCGGGAAAGGCGAAGAAGAGGTCCACTTCGGATGTTCGTGTGCCCATGGAAAGATCGGGGCTTGTTGGTGATGACAATGTTACCAATTGGGAACCCGAGGACCGAATATTAACTTCGGATCTTCTCGCATCCGCTTCTCGCTTCTTTAGCCGGTGGCGGCTACGCAACCATTCCGGTGGATGGGGCGGCAACAACGATGGCTCTCGCATTTCCCTTGAGCTCAGCCTCAACTCCTATGGCTCGACTACTTCCGAAGGAGGTGGCCGCTATAGCTATCGCTCCGTGGATGGGGCGGCTACCACGATAGCTCTCGCATTTCCCCGAGCTCGGCCTCAACTCCTACAGCTCGACTACTTCCGAAGGAGGTGGCCGCTACGCCTATCGCTCCGGTGGATGGGGCGGCTACCACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

195

Amino Acids

22.43

Weight (kDa)

10.92

Isoelectric Point (pI)

62.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	306, 331, 360, 439, 467, 545, 574
AclWI	GGATC	5 cut(s)	57, 96, 109, 138, 300
AcoI	YGGCCR	3 cut(s)	125, 436, 542
AfiI	CCNNNNNNNGG	6 cut(s)	85, 134, 354, 462, 501, 568
AluBI	AGCT	5 cut(s)	394, 447, 482, 500, 520
AluI	AGCT	5 cut(s)	394, 447, 482, 500, 520
Alw21I	GWGCWC	2 cut(s)	396, 502
AlwI	GGATC	5 cut(s)	57, 96, 109, 138, 300
Ama87I	CYCGRG	3 cut(s)	175, 269, 495
AoxI	GGCC	4 cut(s)	125, 436, 503, 542
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
AspS9I	GGNCC	4 cut(s)	28, 75, 195, 274
AsuHPI	GGTGA	1 cut(s)	254
AvaI	CYCGRG	3 cut(s)	175, 269, 495
AvaII	GGWCC	4 cut(s)	28, 75, 195, 274
BaeGI	GKGCMC	1 cut(s)	219
BamHI	GGATCC	1 cut(s)	101
BanII	GRGCYC	2 cut(s)	396, 502
Bbv12I	GWGCWC	2 cut(s)	396, 502
BccI	CCATC	4 cut(s)	348, 365, 455, 562
BfaI	CTAG	1 cut(s)	9
BfmI	CTRYAG	2 cut(s)	442, 515
BisI	GCNGC	6 cut(s)	332, 361, 439, 468, 545, 575
BlpI	GCTNAGC	1 cut(s)	395
BlsI	GCNGC	6 cut(s)	333, 362, 440, 469, 546, 576
Bme18I	GGWCC	4 cut(s)	28, 75, 195, 274
BmeT110I	CYCGRG	3 cut(s)	175, 269, 495
BmgT120I	GGNCC	4 cut(s)	28, 75, 195, 274
BmiI	GGNNCC	3 cut(s)	77, 103, 267
BmsI	GCATC	1 cut(s)	311
Bpu1102I	GCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	2 cut(s)	29, 410
BsaJI	CCNNGG	3 cut(s)	219, 270, 456
BsaWI	WCCGGW	2 cut(s)	347, 561
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	6 cut(s)	85, 134, 354, 462, 501, 568
Bse118I	RCCGGY	1 cut(s)	324
BseDI	CCNNGG	3 cut(s)	219, 270, 456
BseGI	GGATG	5 cut(s)	211, 302, 359, 466, 573
BseLI	CCNNNNNNNGG	6 cut(s)	85, 134, 354, 462, 501, 568
BseMII	CTCAG	2 cut(s)	105, 409
BseSI	GKGCMC	1 cut(s)	219
BshFI	GGCC	4 cut(s)	127, 438, 505, 544
BsiHKAI	GWGCWC	2 cut(s)	396, 502
BsiHKCI	CYCGRG	3 cut(s)	175, 269, 495
BsiSI	CCGG	4 cut(s)	128, 325, 348, 562
BslFI	GGGAC	1 cut(s)	61
BslI	CCNNNNNNNGG	6 cut(s)	85, 134, 354, 462, 501, 568
BsmFI	GGGAC	1 cut(s)	61
BsnI	GGCC	4 cut(s)	127, 438, 505, 544
BsoBI	CYCGRG	3 cut(s)	175, 269, 495
Bsp1286I	GDGCHC	3 cut(s)	219, 396, 502
Bsp143I	GATC	5 cut(s)	49, 101, 130, 227, 292
Bsp1720I	GCTNAGC	1 cut(s)	395
Bsp19I	CCATGG	1 cut(s)	219
BspACI	CCGC	7 cut(s)	306, 331, 360, 439, 467, 545, 574
BspANI	GGCC	4 cut(s)	127, 438, 505, 544
BspCNI	CTCAG	2 cut(s)	106, 408
BspLI	GGNNCC	3 cut(s)	77, 103, 267
BspPI	GGATC	5 cut(s)	57, 96, 109, 138, 300
BsrFI	RCCGGY	1 cut(s)	324
BssAI	RCCGGY	1 cut(s)	324
BssECI	CCNNGG	3 cut(s)	219, 270, 456
BssMI	GATC	5 cut(s)	49, 101, 130, 227, 292
BssT1I	CCWWGG	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	185
BstDEI	CTNAG	2 cut(s)	114, 395
BstDSI	CCRYGG	2 cut(s)	219, 456
BstF5I	GGATG	5 cut(s)	211, 302, 359, 466, 573
BstKTI	GATC	5 cut(s)	52, 104, 133, 230, 295
BstMBI	GATC	5 cut(s)	49, 101, 130, 227, 292
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 444
BstSFI	CTRYAG	2 cut(s)	442, 515
BstSLI	GKGCMC	1 cut(s)	219
BstX2I	RGATCY	3 cut(s)	49, 101, 292
BstXI	CCANNNNNNTGG	1 cut(s)	350
BstYI	RGATCY	3 cut(s)	49, 101, 292
BsuRI	GGCC	4 cut(s)	127, 438, 505, 544
BtgI	CCRYGG	2 cut(s)	219, 456
BtsCI	GGATG	5 cut(s)	211, 302, 359, 466, 573
BtsIMutI	CAGTG	1 cut(s)	111
Cfr10I	RCCGGY	1 cut(s)	324
Cfr13I	GGNCC	4 cut(s)	28, 75, 195, 274
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	114, 395
DpnI	GATC	5 cut(s)	51, 103, 132, 229, 294
DpnII	GATC	5 cut(s)	49, 101, 130, 227, 292
EaeI	YGGCCR	3 cut(s)	125, 436, 542
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Ecl136II	GAGCTC	2 cut(s)	394, 500
Eco130I	CCWWGG	1 cut(s)	219
Eco24I	GRGCYC	2 cut(s)	396, 502
Eco47I	GGWCC	4 cut(s)	28, 75, 195, 274
Eco53kI	GAGCTC	2 cut(s)	394, 500
Eco88I	CYCGRG	3 cut(s)	175, 269, 495
EcoICRI	GAGCTC	2 cut(s)	394, 500
EcoO109I	RGGNCCY	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	219
EcoT38I	GRGCYC	2 cut(s)	396, 502
ErhI	CCWWGG	1 cut(s)	219
FaeI	CATG	1 cut(s)	223
FaiI	YATR	5 cut(s)	33, 35, 221, 411, 444
FaqI	GGGAC	1 cut(s)	61
FatI	CATG	1 cut(s)	219
Fnu4HI	GCNGC	6 cut(s)	332, 361, 439, 468, 545, 575
FokI	GGATG	5 cut(s)	218, 289, 366, 473, 580
FriOI	GRGCYC	2 cut(s)	396, 502
Fsp4HI	GCNGC	6 cut(s)	332, 361, 439, 468, 545, 575
FspBI	CTAG	1 cut(s)	9
GluI	GCNGC	6 cut(s)	332, 361, 439, 468, 545, 575
HaeIII	GGCC	4 cut(s)	127, 438, 505, 544
HapII	CCGG	4 cut(s)	128, 325, 348, 562
Hin1II	CATG	1 cut(s)	223
HinfI	GANTC	4 cut(s)	16, 39, 93, 173
HpaII	CCGG	4 cut(s)	128, 325, 348, 562
HphI	GGTGA	1 cut(s)	254
Hpy166II	GTNNAC	2 cut(s)	164, 198
Hpy188I	TCNGA	5 cut(s)	98, 205, 292, 427, 533
Hpy188III	TCNNGA	3 cut(s)	140, 161, 177
Hpy8I	GTNNAC	2 cut(s)	164, 198
HpyAV	CCTTC	2 cut(s)	422, 528
HpyCH4IV	ACGT	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 444
HpyF3I	CTNAG	2 cut(s)	114, 395
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	223
Kzo9I	GATC	5 cut(s)	49, 101, 130, 227, 292
LmnI	GCTCC	3 cut(s)	88, 458, 564
LpnPI	CCDG	4 cut(s)	141, 338, 361, 575
LweI	GCATC	1 cut(s)	311
MaeI	CTAG	1 cut(s)	9
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	5 cut(s)	51, 103, 132, 229, 294
MboI	GATC	5 cut(s)	49, 101, 130, 227, 292
MboII	GAAGA	3 cut(s)	199, 202, 287
MfeI	CAATTG	1 cut(s)	259
MflI	RGATCY	3 cut(s)	49, 101, 292
MhlI	GDGCHC	3 cut(s)	219, 396, 502
MluCI	AATT	1 cut(s)	259
MlyI	GAGTC	1 cut(s)	167
MnlI	CCTC	9 cut(s)	53, 92, 128, 186, 265, 410, 425, 516, 531
MseI	TTAA	1 cut(s)	284
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	4 cut(s)	128, 325, 348, 562
MunI	CAATTG	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	321, 444
NcoI	CCATGG	1 cut(s)	219
NdeII	GATC	5 cut(s)	49, 101, 130, 227, 292
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	3 cut(s)	77, 103, 267
NmeAIII	GCCGAG	1 cut(s)	481
PcsI	WCGNNNNNNNCGW	2 cut(s)	102, 182
PfeI	GAWTC	3 cut(s)	16, 39, 93
PkrI	GCNGC	6 cut(s)	333, 362, 440, 469, 546, 576
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	75
Psp124BI	GAGCTC	2 cut(s)	396, 502
Psp5II	RGGWCCY	1 cut(s)	75
PspN4I	GGNNCC	3 cut(s)	77, 103, 267
PspPI	GGNCC	4 cut(s)	28, 75, 195, 274
PspPPI	RGGWCCY	1 cut(s)	75
PsuI	RGATCY	3 cut(s)	49, 101, 292
RseI	CAYNNNNRTG	1 cut(s)	348
SacI	GAGCTC	2 cut(s)	396, 502
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	6 cut(s)	332, 361, 439, 468, 545, 575
Sau3AI	GATC	5 cut(s)	49, 101, 130, 227, 292
Sau96I	GGNCC	4 cut(s)	28, 75, 195, 274
SchI	GAGTC	1 cut(s)	167
SduI	GDGCHC	3 cut(s)	219, 396, 502
SfaNI	GCATC	1 cut(s)	311
SfcI	CTRYAG	2 cut(s)	442, 515
SinI	GGWCC	4 cut(s)	28, 75, 195, 274
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	2 cut(s)	44, 389
SmoI	CTYRAG	2 cut(s)	44, 389
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	7 cut(s)	306, 331, 360, 439, 467, 545, 574
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	1 cut(s)	9
SstI	GAGCTC	2 cut(s)	396, 502
StyI	CCWWGG	1 cut(s)	219
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	3 cut(s)	133, 416, 522
TaqII	GACCGA	1 cut(s)	291
TasI	AATT	1 cut(s)	259
TauI	GCSGC	6 cut(s)	334, 363, 441, 470, 547, 577
TfiI	GAWTC	3 cut(s)	16, 39, 93
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	1 cut(s)	118
TspGWI	ACGGA	3 cut(s)	41, 94, 445
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	4 cut(s)	28, 75, 195, 274
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.