Rorug03G0326700

Flavin containing amine oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
36108780 .. 36109876
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0326700.1

Sequence Viewer

Length: 438 bp
ATGGGTGCTCTTAATTATCTTTCCAACTTTTGCACTGTCACTAGAACAAGGACCAGGAGGAAAACAATGCAGAAAGTTGAGATCAAAGTCAAAATGGATTGTGATGGCTGTGAAAGAAAAGTTAAGAAGGCTGTTTCGACCATGAAAGGTGTAGAAAGTGTGGAGGTGAACCGAAAACAAAGTCGGGTAATTGTAAACGGGTATGTGGAAGCAAACAGGGTTTTGAAGAGAGTTAAGAGTACGGGCAAAAGAGCTGAAATTTGGCCATACATCCCTCAACATCTTGTCCATTATCCACACGCCTCCGGAGCCTACGACAAAAGGGCACCACCAGGTCACGTTAAGAATACATTTGCTTTTCCGGCCTCTGATGCATCTGACAACAACATTGTCTCATTTTTCAGTGATGACAATGTTAATGCTTGTTCTATAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

145

Amino Acids

16.34

Weight (kDa)

9.81

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 29 - 83 9.4e-14 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17950
fragaria_vesca FvH4_1g11910 FvH4_3g04400
malus_domestica MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica Prupe.7G167700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 325
AccIII TCCGGA 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 263
AcsI RAATTY 1 cut(s) 258
AfaI GTAC 1 cut(s) 241
AgsI TTSAA 1 cut(s) 226
AjnI CCWGG 2 cut(s) 53, 331
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 397
Aor13HI TCCGGA 1 cut(s) 305
AoxI GGCC 2 cut(s) 263, 363
ApoI RAATTY 1 cut(s) 258
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 178
AvaII GGWCC 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 328
BalI TGGCCA 1 cut(s) 265
BanI GGYRCC 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 10
BccI CCATC 1 cut(s) 98
BciT130I CCWGG 2 cut(s) 55, 333
BcoDI GTCTC 1 cut(s) 397
BfaI CTAG 1 cut(s) 42
Bme1390I CCNGG 2 cut(s) 55, 333
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 2 cut(s) 310, 327
BmrFI CCNGG 2 cut(s) 55, 333
BmsI GCATC 2 cut(s) 361, 383
BsaWI WCCGGW 1 cut(s) 305
BseAI TCCGGA 1 cut(s) 305
BseBI CCWGG 2 cut(s) 55, 333
BseGI GGATG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 328
BshFI GGCC 2 cut(s) 265, 365
BshNI GGYRCC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 10
BsiSI CCGG 2 cut(s) 306, 362
BsmAI GTCTC 1 cut(s) 397
BsnI GGCC 2 cut(s) 265, 365
Bsp1286I GDGCHC 2 cut(s) 10, 328
Bsp13I TCCGGA 1 cut(s) 305
Bsp143I GATC 1 cut(s) 81
BspANI GGCC 2 cut(s) 265, 365
BspEI TCCGGA 1 cut(s) 305
BspLI GGNNCC 2 cut(s) 310, 327
BspT107I GGYRCC 1 cut(s) 325
BssMI GATC 1 cut(s) 81
Bst2UI CCWGG 2 cut(s) 55, 333
Bst4CI ACNGT 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 221
BstF5I GGATG 1 cut(s) 270
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 3 cut(s) 308, 362, 371
BstNI CCWGG 2 cut(s) 55, 333
BstSCI CCNGG 2 cut(s) 53, 331
BstSLI GKGCMC 1 cut(s) 328
BsuRI GGCC 2 cut(s) 265, 365
BtsCI GGATG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 33, 409
Cfr13I GGNCC 1 cut(s) 51
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 1 cut(s) 240
CviAII CATG 1 cut(s) 142
CviJI RGCY 6 cut(s) 108, 131, 254, 265, 311, 365
CviKI_1 RGCY 6 cut(s) 108, 131, 254, 265, 311, 365
CviQI GTAC 1 cut(s) 240
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 263
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 53, 331
EcoT22I ATGCAT 1 cut(s) 376
FaeI CATG 1 cut(s) 145
FaiI YATR 4 cut(s) 143, 204, 268, 431
FatI CATG 1 cut(s) 141
FokI GGATG 1 cut(s) 257
FspBI CTAG 1 cut(s) 42
HaeIII GGCC 2 cut(s) 265, 365
HapII CCGG 2 cut(s) 306, 362
Hin1II CATG 1 cut(s) 145
HpaII CCGG 2 cut(s) 306, 362
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 2 cut(s) 169, 196
Hpy188I TCNGA 2 cut(s) 370, 379
Hpy188III TCNNGA 1 cut(s) 306
Hpy8I GTNNAC 2 cut(s) 169, 196
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 3 cut(s) 33, 70, 374
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 362, 371
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 1 cut(s) 145
Kpn2I TCCGGA 1 cut(s) 305
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 7 cut(s) 40, 67, 202, 318, 319, 345, 375
LweI GCATC 2 cut(s) 361, 383
MabI ACCWGGT 1 cut(s) 331
MaeI CTAG 1 cut(s) 42
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 2 cut(s) 37, 335
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 238
MhlI GDGCHC 2 cut(s) 10, 328
MlsI TGGCCA 1 cut(s) 265
MluCI AATT 3 cut(s) 13, 189, 258
MluNI TGGCCA 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 5 cut(s) 51, 157, 285, 313, 376
Mox20I TGGCCA 1 cut(s) 265
Mph1103I ATGCAT 1 cut(s) 376
MroI TCCGGA 1 cut(s) 305
MscI TGGCCA 1 cut(s) 265
MseI TTAA 5 cut(s) 12, 123, 234, 342, 417
Msp20I TGGCCA 1 cut(s) 265
MspI CCGG 2 cut(s) 306, 362
MspR9I CCNGG 2 cut(s) 55, 333
MvaI CCWGG 2 cut(s) 55, 333
MwoI GCNNNNNNNGC 3 cut(s) 308, 362, 371
NdeII GATC 1 cut(s) 81
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 2 cut(s) 310, 327
NmuCI GTSAC 2 cut(s) 37, 335
NsiI ATGCAT 1 cut(s) 376
Psp6I CCWGG 2 cut(s) 53, 331
PspGI CCWGG 2 cut(s) 53, 331
PspN4I GGNNCC 2 cut(s) 310, 327
PspPI GGNCC 1 cut(s) 51
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 5 cut(s) 12, 123, 234, 342, 417
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 1 cut(s) 51
ScrFI CCNGG 2 cut(s) 55, 333
SduI GDGCHC 2 cut(s) 10, 328
SetI ASST 5 cut(s) 151, 168, 256, 337, 342
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 2 cut(s) 361, 383
SinI GGWCC 1 cut(s) 51
Sse9I AATT 3 cut(s) 13, 189, 258
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 2 cut(s) 53, 331
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 1 cut(s) 342
TaqI TCGA 1 cut(s) 137
TasI AATT 3 cut(s) 13, 189, 258
Tru1I TTAA 5 cut(s) 12, 123, 234, 342, 417
Tru9I TTAA 5 cut(s) 12, 123, 234, 342, 417
TscAI CASTG 2 cut(s) 40, 409
TseFI GTSAC 2 cut(s) 37, 335
Tsp45I GTSAC 2 cut(s) 37, 335
TspDTI ATGAA 1 cut(s) 158
TspRI CASTG 2 cut(s) 40, 409
VpaK11BI GGWCC 1 cut(s) 51
XapI RAATTY 1 cut(s) 258
XspI CTAG 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.