Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003443.1

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Forward (+)

76529 .. 77268

Gene Structure 740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003443.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atggaaccacaaaaccggcatccaaccgaggatggaggaagcaacacagcagccaagagtagtcctaacatgcattgcaagcagagtaataccaggtggcttcctactagagatcagataagaatcctcaaggagctttacgatgacaagggagttaagtcccccactgtagagcaggttcagaggatcactctccagctaaaatggtacggagagatcgagaacaagaacgtcttttattggttccagaatcaaagggctcgggagaaactgaagaacaataagctcacttcggatgttcaagtgcccaagcaaagatcagggcttgttggtggatccaataatctcaactttgggtcaactagttctgctggtgttggtggatccataatggaacaacgaggggacgatcaccaggagattaaaacccttccactgtttcccatgcaaagtgaggacatctttggcaacatgaagactacttccgatggaggtggtggtcacggccttcatgaatgggctttgcaagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

177

Amino Acids

19.91

Weight (kDa)

7.87

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	166
AclWI	GGATC	5 cut(s)	194, 330, 343, 378, 391
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	302
AhlI	ACTAGT	1 cut(s)	362
AjnI	CCWGG	2 cut(s)	92, 414
AluBI	AGCT	3 cut(s)	136, 199, 286
AluI	AGCT	3 cut(s)	136, 199, 286
AlwI	GGATC	5 cut(s)	194, 330, 343, 378, 391
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	1 cut(s)	505
ApeKI	GCWGC	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	404
AvaI	CYCGRG	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	309
BamHI	GGATCC	2 cut(s)	335, 383
BanII	GRGCYC	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	482
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	2 cut(s)	26, 482
BceAI	ACGGC	1 cut(s)	520
BciT130I	CCWGG	2 cut(s)	94, 416
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	2 cut(s)	108, 363
BfmI	CTRYAG	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	166
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	94, 416
BmeT110I	CYCGRG	1 cut(s)	261
BmiI	GGNNCC	4 cut(s)	6, 245, 337, 385
BmrFI	CCNGG	2 cut(s)	94, 416
BmsI	GCATC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	482
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpmI	CTGGAG	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	27
Bse118I	RCCGGY	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	2 cut(s)	94, 416
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	3 cut(s)	19, 37, 301
BseJI	GATNNNNATC	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	62
BshFI	GGCC	1 cut(s)	507
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	16
BslFI	GGGAC	2 cut(s)	145, 419
BsmFI	GGGAC	2 cut(s)	145, 419
BsnI	GGCC	1 cut(s)	507
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	2 cut(s)	262, 309
Bsp143I	GATC	7 cut(s)	112, 186, 216, 317, 335, 383, 409
BspANI	GGCC	1 cut(s)	507
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	4 cut(s)	6, 245, 337, 385
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	5 cut(s)	194, 330, 343, 378, 391
BsrDI	GCAATG	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	15
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	7 cut(s)	112, 186, 216, 317, 335, 383, 409
Bst2UI	CCWGG	2 cut(s)	94, 416
Bst4CI	ACNGT	2 cut(s)	169, 438
BstC8I	GCNNGC	1 cut(s)	80
BstF5I	GGATG	3 cut(s)	19, 37, 301
BstKTI	GATC	7 cut(s)	115, 189, 219, 320, 338, 386, 412
BstMBI	GATC	7 cut(s)	112, 186, 216, 317, 335, 383, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	2 cut(s)	94, 416
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	92, 414
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	2 cut(s)	335, 383
BstYI	RGATCY	2 cut(s)	335, 383
BsuRI	GGCC	1 cut(s)	507
BtsCI	GGATG	3 cut(s)	19, 37, 301
BtsIMutI	CAGTG	2 cut(s)	165, 434
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	80
CciI	TCATGA	1 cut(s)	511
Cfr10I	RCCGGY	1 cut(s)	15
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	4 cut(s)	70, 445, 472, 512
CviJI	RGCY	9 cut(s)	53, 100, 136, 199, 260, 286, 325, 507, 521
CviKI_1	RGCY	9 cut(s)	53, 100, 136, 199, 260, 286, 325, 507, 521
CviQI	GTAC	1 cut(s)	208
DpnI	GATC	7 cut(s)	114, 188, 218, 319, 337, 385, 411
DpnII	GATC	7 cut(s)	112, 186, 216, 317, 335, 383, 409
Eco24I	GRGCYC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	261
EcoRII	CCWGG	2 cut(s)	92, 414
EcoT22I	ATGCAT	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	262
FaeI	CATG	4 cut(s)	73, 448, 475, 515
FaiI	YATR	5 cut(s)	71, 389, 446, 473, 513
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	2 cut(s)	145, 419
FatI	CATG	4 cut(s)	69, 444, 471, 511
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	3 cut(s)	6, 44, 308
FriOI	GRGCYC	1 cut(s)	262
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	2 cut(s)	108, 363
GluI	GCNGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	179
HaeIII	GGCC	1 cut(s)	507
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	4 cut(s)	73, 448, 475, 515
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	2 cut(s)	123, 250
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188I	TCNGA	4 cut(s)	117, 183, 295, 487
Hpy188III	TCNNGA	4 cut(s)	220, 247, 263, 512
Hpy8I	GTNNAC	1 cut(s)	360
HpyAV	CCTTC	2 cut(s)	440, 518
HpyCH4III	ACNGT	2 cut(s)	169, 438
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	4 cut(s)	73, 78, 448, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	73, 448, 475, 515
Kzo9I	GATC	7 cut(s)	112, 186, 216, 317, 335, 383, 409
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	28
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	2 cut(s)	108, 363
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	500
MalI	GATC	7 cut(s)	114, 188, 218, 319, 337, 385, 411
MboI	GATC	7 cut(s)	112, 186, 216, 317, 335, 383, 409
MboII	GAAGA	2 cut(s)	286, 487
MflI	RGATCY	2 cut(s)	335, 383
MhlI	GDGCHC	2 cut(s)	262, 309
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	7 cut(s)	22, 29, 137, 177, 395, 448, 485
Mph1103I	ATGCAT	1 cut(s)	75
MseI	TTAA	2 cut(s)	156, 423
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	2 cut(s)	94, 416
MvaI	CCWGG	2 cut(s)	94, 416
MwoI	GCNNNNNNNGC	1 cut(s)	79
NdeII	GATC	7 cut(s)	112, 186, 216, 317, 335, 383, 409
NlaIII	CATG	4 cut(s)	73, 448, 475, 515
NlaIV	GGNNCC	4 cut(s)	6, 245, 337, 385
NmuCI	GTSAC	1 cut(s)	500
NsiI	ATGCAT	1 cut(s)	75
NspI	RCATGY	1 cut(s)	73
PagI	TCATGA	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	123, 250
PkrI	GCNGC	1 cut(s)	52
Psp6I	CCWGG	2 cut(s)	92, 414
PspGI	CCWGG	2 cut(s)	92, 414
PspN4I	GGNNCC	4 cut(s)	6, 245, 337, 385
PsrI	GAACNNNNNNTAC	2 cut(s)	162, 194
PsuI	RGATCY	2 cut(s)	335, 383
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SaqAI	TTAA	2 cut(s)	156, 423
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	7 cut(s)	112, 186, 216, 317, 335, 383, 409
ScrFI	CCNGG	2 cut(s)	94, 416
SduI	GDGCHC	2 cut(s)	262, 309
SetI	ASST	7 cut(s)	98, 138, 180, 201, 234, 288, 496
SexAI	ACCWGGT	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SpeI	ACTAGT	1 cut(s)	362
SspMI	CTAG	2 cut(s)	108, 363
StyD4I	CCNGG	2 cut(s)	92, 414
TaaI	ACNGT	2 cut(s)	169, 438
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	123, 250
Tru1I	TTAA	2 cut(s)	156, 423
Tru9I	TTAA	2 cut(s)	156, 423
TscAI	CASTG	2 cut(s)	172, 441
TseFI	GTSAC	1 cut(s)	500
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	500
TspDTI	ATGAA	3 cut(s)	488, 500, 528
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	2 cut(s)	172, 441
XceI	RCATGY	1 cut(s)	73
XspI	CTAG	2 cut(s)	108, 363
Zsp2I	ATGCAT	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.