Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Forward (+)

19711716 .. 19714871

Gene Structure 3156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0124400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGGCTGACGAAGAACAATCTGCTGGTCTTGAATCACCCTTGATTCCAGTTCTGCCCCAAGAACATGCATTACAATCAACAAAGGGACGATTCACGAAAGGCGAATTGTTCGGGGAACTGAAGAAGCAGTTATTGTTGGCAGGGCCGCTGGTATCATCAAATTTTTTGTTGTTCGGTATGCAGGTTATTTCAGTCATGTATGTTGGCCATCTTGGGGAGCTATCACTTGCAGGTGCTTCCATGGCCACTTCTTTTGCATCTGTGACTGGTTTGAGCTTGATAATAGGAATGGGTAGCGCATTAGACACATTTTGCGGGCAGTCATATGGAGCAAAACAGTATCATATGCTTGGTGTACACATGCAGAGGGCAATGCTTGTTCTTCTGCTGGCCTGCATTCCTCTTGCAACTATATGGTTCAATGCAGGCCACATTCTCAAATTCTTGGGTCAAGATCCAGAAATTGCCGCTGCCGCTGGAAACTATGCTCGTTTCCTGATACCTTGCATTTTTGCTTACGCAGTCCAACAATGTCATTCCAGATTCTTGCAAACCCAAAACAATGTGGTTCCTATGATAGCTACCACAGGTATTGCAACACTAGTGCACTTGCTTCTCTGTTGGCTTCTGATATACAAGACCAGCTTGGGATATAGAGGCGCTGCTGTCGCGATCTCTATCTCATATTGGATCAATGCATTACTCTTGGTTGTTTATATCAGAGTTTCTCCTTCTTGTATACACACATGGACTGGATTCTCAAAGGAGGCATTTCATGGAATTCCCAATTTCATAAGACTATCTATTCCTTCAGCTATAATGATCAGCCTAGAAATCTGGTCATTCGAAATGATGGTTCTCTTATCCGGTTTTCTTCCAAATCCACAGCTTGAAACCTCAGTGCTATCAATCAGCCTTAACACATGCTCCATGTTATACATGATTCCTCTTGCATTCGCCGGTGCAGCAAGCACAAGAGTCTCAAATCAATTGGGTGCCGGGCAACCACGACTAGCTCGTCTAGCAGTAGGTGTTGCACTATGCATTGTTGTTACTGAAGGTATTGTGGCTGCTGCAATACTGATACTGGGTCGAAAAGTTTGGGGCTACTGTTACAGCAGTGAAAAGGAAGTTGTCAGTTATGTTGGGCAAATGCTTATTTTGGTTGCGGTATCCCACTTTTTTGATGGACTTCAATCTGTGCTTTCAGGTATCATAAGAGGAAGTGGACAGCAGAAGATTGGAGCATATGTAAATGTGGGAGCTTATTATCTTATGGGAATCCCTACTGCATTATTATTAGCATTTGTATTTCACATTGGAGGAAAGGGTCTTTGGATGGGAATCATTGTTGCGCTATTTGTGCAAGCACTGTCTCTTGCAATCATAATCTTATTCACAGACTGGGAGAAAGAAGTGAAGAAAGCTTCTGATAGAGTATACAACACACCAACCGCGTCTGATGCATCATCGGTAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

493

Amino Acids

53.12

Weight (kDa)

8.49

Isoelectric Point (pI)

26.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	49 - 209	1.1e-39	MatE
MatE	PF01554	270 - 431	3.6e-25	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	221
AasI	GACNNNNNNGTC	1 cut(s)	1017
Acc36I	ACCTGC	2 cut(s)	172, 221
AccB1I	GGYRCC	1 cut(s)	995
AccI	GTMKAC	2 cut(s)	739, 1440
AccII	CGCG	2 cut(s)	671, 1457
AciI	CCGC	6 cut(s)	146, 315, 468, 474, 1169, 1455
AclWI	GGATC	2 cut(s)	449, 698
AcoI	YGGCCR	2 cut(s)	205, 243
AcsI	RAATTY	3 cut(s)	160, 440, 780
AcuI	CTGAAG	3 cut(s)	140, 795, 1077
AfaI	GTAC	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	4 cut(s)	32, 421, 893, 1196
AhlI	ACTAGT	1 cut(s)	601
AjuI	GAANNNNNNNTTGG	2 cut(s)	1318, 1350
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	2 cut(s)	985, 1380
Alw44I	GTGCAC	1 cut(s)	605
AlwI	GGATC	2 cut(s)	449, 698
AoxI	GGCC	5 cut(s)	143, 205, 243, 390, 427
ApaLI	GTGCAC	1 cut(s)	605
ApeKI	GCWGC	5 cut(s)	470, 662, 965, 1070, 1073
ApoI	RAATTY	3 cut(s)	160, 440, 780
AspLEI	GCGC	3 cut(s)	299, 662, 1357
AspS9I	GGNCC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	1000
AsuHPI	GGTGA	1 cut(s)	27
AsuII	TTCGAA	1 cut(s)	846
BaeGI	GKGCMC	1 cut(s)	609
BalI	TGGCCA	2 cut(s)	207, 245
BanI	GGYRCC	1 cut(s)	995
Bbv12I	GWGCWC	1 cut(s)	609
BbvI	GCAGC	5 cut(s)	457, 649, 977, 1057, 1060
BccI	CCATC	4 cut(s)	216, 847, 1181, 1333
BciVI	GTATCC	1 cut(s)	1183
BclI	TGATCA	1 cut(s)	822
BcnI	CCSGG	1 cut(s)	1000
BcoDI	GTCTC	2 cut(s)	985, 1380
BcuI	ACTAGT	1 cut(s)	601
BfaI	CTAG	4 cut(s)	602, 830, 1013, 1022
BfoI	RGCGCY	1 cut(s)	663
BfuAI	ACCTGC	2 cut(s)	172, 221
BfuI	GTATCC	1 cut(s)	1183
BisI	GCNGC	8 cut(s)	146, 468, 471, 474, 663, 966, 1071, 1074
BlsI	GCNGC	8 cut(s)	147, 469, 472, 475, 664, 967, 1072, 1075
Bme1390I	CCNGG	1 cut(s)	1000
BmgT120I	GGNCC	1 cut(s)	143
BmiI	GGNNCC	2 cut(s)	570, 997
BmrFI	CCNGG	1 cut(s)	1000
BmrI	ACTGGG	2 cut(s)	1097, 1414
BmsI	GCATC	3 cut(s)	266, 1453, 1475
BmuI	ACTGGG	2 cut(s)	1097, 1414
Bpu14I	TTCGAA	1 cut(s)	846
BpuMI	CCSGG	1 cut(s)	1000
BsaBI	GATNNNNATC	2 cut(s)	677, 1343
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	866
BsaXI	ACNNNNNCTCC	4 cut(s)	911, 941, 1236, 1266
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse118I	RCCGGY	1 cut(s)	959
Bse1I	ACTGG	5 cut(s)	47, 271, 757, 1092, 1409
Bse3DI	GCAATG	1 cut(s)	378
Bse8I	GATNNNNATC	2 cut(s)	677, 1343
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	1344
BseJI	GATNNNNATC	2 cut(s)	677, 1343
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	1 cut(s)	912
BseNI	ACTGG	5 cut(s)	47, 271, 757, 1092, 1409
BseSI	GKGCMC	1 cut(s)	609
BseXI	GCAGC	5 cut(s)	457, 649, 977, 1057, 1060
BsgI	GTGCAG	1 cut(s)	984
Bsh1236I	CGCG	2 cut(s)	671, 1457
BshFI	GGCC	5 cut(s)	145, 207, 245, 392, 429
BshNI	GGYRCC	1 cut(s)	995
BsiHKAI	GWGCWC	1 cut(s)	609
BsiSI	CCGG	3 cut(s)	867, 960, 999
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmAI	GTCTC	2 cut(s)	985, 1380
BsmFI	GGGAC	1 cut(s)	99
BsmI	GAATGC	2 cut(s)	396, 953
BsnI	GGCC	5 cut(s)	145, 207, 245, 392, 429
Bsp119I	TTCGAA	1 cut(s)	846
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp1407I	TGTACA	1 cut(s)	355
Bsp143I	GATC	4 cut(s)	454, 672, 690, 822
Bsp19I	CCATGG	1 cut(s)	240
Bsp68I	TCGCGA	1 cut(s)	671
BspACI	CCGC	6 cut(s)	146, 315, 468, 474, 1169, 1455
BspANI	GGCC	5 cut(s)	145, 207, 245, 392, 429
BspCNI	CTCAG	1 cut(s)	911
BspFNI	CGCG	2 cut(s)	671, 1457
BspLI	GGNNCC	2 cut(s)	570, 997
BspMI	ACCTGC	2 cut(s)	172, 221
BspPI	GGATC	2 cut(s)	449, 698
BspT104I	TTCGAA	1 cut(s)	846
BspT107I	GGYRCC	1 cut(s)	995
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	959
BsrGI	TGTACA	1 cut(s)	355
BsrI	ACTGG	5 cut(s)	47, 271, 757, 1092, 1409
BssAI	RCCGGY	1 cut(s)	959
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	4 cut(s)	454, 672, 690, 822
BssNAI	GTATAC	2 cut(s)	740, 1441
BssT1I	CCWWGG	1 cut(s)	240
Bst1107I	GTATAC	2 cut(s)	740, 1441
Bst4CI	ACNGT	3 cut(s)	339, 1112, 1374
BstAUI	TGTACA	1 cut(s)	355
BstBI	TTCGAA	1 cut(s)	846
BstC8I	GCNNGC	6 cut(s)	317, 390, 394, 427, 970, 1368
BstDEI	CTNAG	1 cut(s)	898
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	1344
BstFNI	CGCG	2 cut(s)	671, 1457
BstH2I	RGCGCY	1 cut(s)	663
BstHHI	GCGC	3 cut(s)	299, 662, 1357
BstKTI	GATC	4 cut(s)	457, 675, 693, 825
BstMAI	GTCTC	2 cut(s)	985, 1380
BstMBI	GATC	4 cut(s)	454, 672, 690, 822
BstMWI	GCNNNNNNNGC	7 cut(s)	242, 473, 668, 965, 1022, 1363, 1463
BstNSI	RCATGY	3 cut(s)	68, 364, 927
BstSCI	CCNGG	1 cut(s)	998
BstSLI	GKGCMC	1 cut(s)	609
BstUI	CGCG	2 cut(s)	671, 1457
BstV1I	GCAGC	5 cut(s)	457, 649, 977, 1057, 1060
BstX2I	RGATCY	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	454
BstZ17I	GTATAC	2 cut(s)	740, 1441
BsuI	GTATCC	1 cut(s)	1183
BsuRI	GGCC	5 cut(s)	145, 207, 245, 392, 429
BtgI	CCRYGG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	1344
BtsI	GCAGTG	1 cut(s)	1126
BtsIMutI	CAGTG	3 cut(s)	906, 1126, 1370
BtuMI	TCGCGA	1 cut(s)	671
BveI	ACCTGC	2 cut(s)	172, 221
Cac8I	GCNNGC	6 cut(s)	317, 390, 394, 427, 970, 1368
CfoI	GCGC	3 cut(s)	299, 662, 1357
Cfr10I	RCCGGY	1 cut(s)	959
Cfr13I	GGNCC	1 cut(s)	143
CseI	GACGC	1 cut(s)	1446
Csp6I	GTAC	1 cut(s)	356
CspCI	CAANNNNNGTGG	4 cut(s)	235, 270, 574, 609
CviAII	CATG	9 cut(s)	65, 196, 241, 361, 747, 776, 924, 931, 940
CviQI	GTAC	1 cut(s)	356
DdeI	CTNAG	1 cut(s)	898
DpnI	GATC	4 cut(s)	456, 674, 692, 824
DpnII	GATC	4 cut(s)	454, 672, 690, 822
DrdI	GACNNNNNNGTC	1 cut(s)	1017
DseDI	GACNNNNNNGTC	1 cut(s)	1017
EaeI	YGGCCR	2 cut(s)	205, 243
Eco130I	CCWWGG	1 cut(s)	240
Eco57I	CTGAAG	3 cut(s)	140, 795, 1077
EcoRI	GAATTC	1 cut(s)	780
EcoT14I	CCWWGG	1 cut(s)	240
EcoT22I	ATGCAT	4 cut(s)	70, 700, 1046, 1468
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	9 cut(s)	68, 199, 244, 364, 750, 779, 927, 934, 943
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	9 cut(s)	64, 195, 240, 360, 746, 775, 923, 930, 939
FauI	CCCGC	1 cut(s)	308
FauNDI	CATATG	3 cut(s)	325, 345, 1249
FbaI	TGATCA	1 cut(s)	822
FblI	GTMKAC	2 cut(s)	739, 1440
Fnu4HI	GCNGC	8 cut(s)	146, 468, 471, 474, 663, 966, 1071, 1074
FokI	GGATG	1 cut(s)	1351
Fsp4HI	GCNGC	8 cut(s)	146, 468, 471, 474, 663, 966, 1071, 1074
FspBI	CTAG	4 cut(s)	602, 830, 1013, 1022
GlaI	GCGC	3 cut(s)	298, 661, 1356
GluI	GCNGC	8 cut(s)	146, 468, 471, 474, 663, 966, 1071, 1074
HaeII	RGCGCY	1 cut(s)	663
HaeIII	GGCC	5 cut(s)	145, 207, 245, 392, 429
HapII	CCGG	3 cut(s)	867, 960, 999
HgaI	GACGC	1 cut(s)	1446
HhaI	GCGC	3 cut(s)	299, 662, 1357
Hin1II	CATG	9 cut(s)	68, 199, 244, 364, 750, 779, 927, 934, 943
Hin6I	GCGC	3 cut(s)	297, 660, 1355
HinP1I	GCGC	3 cut(s)	297, 660, 1355
HindIII	AAGCTT	1 cut(s)	1425
HinfI	GANTC	9 cut(s)	32, 43, 90, 543, 756, 943, 978, 1281, 1344
HpaII	CCGG	3 cut(s)	867, 960, 999
HphI	GGTGA	1 cut(s)	27
Hpy166II	GTNNAC	6 cut(s)	356, 358, 607, 740, 1229, 1441
Hpy188I	TCNGA	4 cut(s)	630, 722, 1432, 1462
Hpy188III	TCNNGA	7 cut(s)	29, 94, 452, 458, 496, 540, 670
Hpy8I	GTNNAC	6 cut(s)	356, 358, 607, 740, 1229, 1441
HpyAV	CCTTC	3 cut(s)	741, 819, 1052
HpyCH4III	ACNGT	3 cut(s)	339, 1112, 1374
HpyF10VI	GCNNNNNNNGC	7 cut(s)	242, 473, 668, 965, 1022, 1363, 1463
HpyF3I	CTNAG	1 cut(s)	898
Hsp92II	CATG	9 cut(s)	68, 199, 244, 364, 750, 779, 927, 934, 943
HspAI	GCGC	3 cut(s)	297, 660, 1355
Ksp22I	TGATCA	1 cut(s)	822
Kzo9I	GATC	4 cut(s)	454, 672, 690, 822
LmnI	GCTCC	5 cut(s)	217, 329, 932, 1244, 1262
Lsp1109I	GCAGC	5 cut(s)	457, 649, 977, 1057, 1060
LweI	GCATC	3 cut(s)	266, 1453, 1475
MaeI	CTAG	4 cut(s)	602, 830, 1013, 1022
MaeIII	GTNAC	3 cut(s)	262, 1051, 1112
MalI	GATC	4 cut(s)	456, 674, 692, 824
MboI	GATC	4 cut(s)	454, 672, 690, 822
MboII	GAAGA	6 cut(s)	23, 133, 374, 866, 1249, 1432
MfeI	CAATTG	1 cut(s)	989
MflI	RGATCY	1 cut(s)	454
MhlI	GDGCHC	1 cut(s)	609
MlsI	TGGCCA	2 cut(s)	207, 245
MluCI	AATT	7 cut(s)	104, 160, 440, 462, 780, 787, 989
MluNI	TGGCCA	2 cut(s)	207, 245
MlyI	GAGTC	1 cut(s)	987
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	8 cut(s)	360, 411, 650, 760, 907, 957, 1214, 1316
Mox20I	TGGCCA	2 cut(s)	207, 245
Mph1103I	ATGCAT	4 cut(s)	70, 700, 1046, 1468
MscI	TGGCCA	2 cut(s)	207, 245
MseI	TTAA	1 cut(s)	918
Msp20I	TGGCCA	2 cut(s)	207, 245
MspA1I	CMGCKG	3 cut(s)	148, 470, 476
MspI	CCGG	3 cut(s)	867, 960, 999
MspR9I	CCNGG	1 cut(s)	1000
MunI	CAATTG	1 cut(s)	989
Mva1269I	GAATGC	2 cut(s)	396, 953
MvnI	CGCG	2 cut(s)	671, 1457
MwoI	GCNNNNNNNGC	7 cut(s)	242, 473, 668, 965, 1022, 1363, 1463
NciI	CCSGG	1 cut(s)	1000
NcoI	CCATGG	1 cut(s)	240
NdeI	CATATG	3 cut(s)	325, 345, 1249
NdeII	GATC	4 cut(s)	454, 672, 690, 822
NlaIII	CATG	9 cut(s)	68, 199, 244, 364, 750, 779, 927, 934, 943
NlaIV	GGNNCC	2 cut(s)	570, 997
NmuCI	GTSAC	1 cut(s)	262
NruI	TCGCGA	1 cut(s)	671
NsiI	ATGCAT	4 cut(s)	70, 700, 1046, 1468
NspI	RCATGY	3 cut(s)	68, 364, 927
NspV	TTCGAA	1 cut(s)	846
PaqCI	CACCTGC	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	1015
PctI	GAATGC	2 cut(s)	396, 953
PfeI	GAWTC	8 cut(s)	32, 43, 90, 543, 756, 943, 1281, 1344
PkrI	GCNGC	8 cut(s)	147, 469, 472, 475, 664, 967, 1072, 1075
PleI	GAGTC	1 cut(s)	986
PpsI	GAGTC	1 cut(s)	986
PspN4I	GGNNCC	2 cut(s)	570, 997
PspPI	GGNCC	1 cut(s)	143
PsrI	GAACNNNNNNTAC	2 cut(s)	54, 86
PsuI	RGATCY	1 cut(s)	454
RruI	TCGCGA	1 cut(s)	671
RsaI	GTAC	1 cut(s)	357
RsaNI	GTAC	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	918
SatI	GCNGC	8 cut(s)	146, 468, 471, 474, 663, 966, 1071, 1074
Sau3AI	GATC	4 cut(s)	454, 672, 690, 822
Sau96I	GGNCC	1 cut(s)	143
SchI	GAGTC	1 cut(s)	987
ScrFI	CCNGG	1 cut(s)	1000
SduI	GDGCHC	1 cut(s)	609
SfaNI	GCATC	3 cut(s)	266, 1453, 1475
SfuI	TTCGAA	1 cut(s)	846
SgrAI	CRCCGGYG	1 cut(s)	959
SpeI	ACTAGT	1 cut(s)	601
Sse9I	AATT	7 cut(s)	104, 160, 440, 462, 780, 787, 989
SsiI	CCGC	6 cut(s)	146, 315, 468, 474, 1169, 1455
SspMI	CTAG	4 cut(s)	602, 830, 1013, 1022
StyD4I	CCNGG	1 cut(s)	998
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	339, 1112, 1374
TaqI	TCGA	2 cut(s)	846, 1093
TasI	AATT	7 cut(s)	104, 160, 440, 462, 780, 787, 989
TatI	WGTACW	1 cut(s)	355
TauI	GCSGC	3 cut(s)	148, 470, 476
TfiI	GAWTC	8 cut(s)	32, 43, 90, 543, 756, 943, 1281, 1344
Tru1I	TTAA	1 cut(s)	918
Tru9I	TTAA	1 cut(s)	918
TscAI	CASTG	3 cut(s)	906, 1126, 1377
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	5 cut(s)	470, 662, 965, 1070, 1073
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	764, 781
TspRI	CASTG	3 cut(s)	906, 1126, 1377
VneI	GTGCAC	1 cut(s)	605
XapI	RAATTY	3 cut(s)	160, 440, 780
XceI	RCATGY	3 cut(s)	68, 364, 927
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1184
XmiI	GTMKAC	2 cut(s)	739, 1440
XspI	CTAG	4 cut(s)	602, 830, 1013, 1022
Zsp2I	ATGCAT	4 cut(s)	70, 700, 1046, 1468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.