Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| E_motif | PF20431 | 75 - 137 | 4.5e-18 | E motif |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 375 |
| AciI | CCGC | 2 cut(s) | 373, 375 |
| AclWI | GGATC | 1 cut(s) | 661 |
| AcuI | CTGAAG | 2 cut(s) | 237, 517 |
| AfaI | GTAC | 2 cut(s) | 47, 174 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 333 |
| AgsI | TTSAA | 2 cut(s) | 269, 660 |
| AjnI | CCWGG | 1 cut(s) | 82 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 221, 253 |
| AluBI | AGCT | 4 cut(s) | 8, 128, 402, 537 |
| AluI | AGCT | 4 cut(s) | 8, 128, 402, 537 |
| Alw21I | GWGCWC | 1 cut(s) | 404 |
| AlwI | GGATC | 1 cut(s) | 661 |
| Ama87I | CYCGRG | 1 cut(s) | 392 |
| ApeKI | GCWGC | 2 cut(s) | 5, 102 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 521, 553 |
| AsuC2I | CCSGG | 3 cut(s) | 328, 393, 394 |
| AsuHPI | GGTGA | 2 cut(s) | 50, 576 |
| AvaI | CYCGRG | 1 cut(s) | 392 |
| BaeGI | GKGCMC | 1 cut(s) | 202 |
| BanII | GRGCYC | 1 cut(s) | 404 |
| BbsI | GAAGAC | 1 cut(s) | 392 |
| Bbv12I | GWGCWC | 1 cut(s) | 404 |
| BbvI | GCAGC | 2 cut(s) | 17, 89 |
| BceAI | ACGGC | 1 cut(s) | 115 |
| BciT130I | CCWGG | 1 cut(s) | 84 |
| BcnI | CCSGG | 3 cut(s) | 328, 393, 394 |
| BfaI | CTAG | 1 cut(s) | 366 |
| BglII | AGATCT | 1 cut(s) | 356 |
| BisI | GCNGC | 2 cut(s) | 6, 103 |
| BlsI | GCNGC | 2 cut(s) | 7, 104 |
| Bme1390I | CCNGG | 4 cut(s) | 84, 328, 393, 394 |
| BmeT110I | CYCGRG | 1 cut(s) | 392 |
| BmiI | GGNNCC | 1 cut(s) | 446 |
| BmrFI | CCNGG | 4 cut(s) | 84, 328, 393, 394 |
| BmrI | ACTGGG | 1 cut(s) | 450 |
| BmsI | GCATC | 3 cut(s) | 48, 172, 463 |
| BmuI | ACTGGG | 1 cut(s) | 450 |
| BpiI | GAAGAC | 1 cut(s) | 392 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 373, 405 |
| BpuMI | CCSGG | 3 cut(s) | 328, 393, 394 |
| BsaJI | CCNNGG | 3 cut(s) | 373, 392, 514 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 333 |
| Bse1I | ACTGG | 2 cut(s) | 445, 587 |
| BseBI | CCWGG | 1 cut(s) | 84 |
| BseDI | CCNNGG | 3 cut(s) | 373, 392, 514 |
| BseGI | GGATG | 3 cut(s) | 454, 556, 565 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 333 |
| BseMII | CTCAG | 2 cut(s) | 371, 489 |
| BseNI | ACTGG | 2 cut(s) | 445, 587 |
| BseSI | GKGCMC | 1 cut(s) | 202 |
| BseXI | GCAGC | 2 cut(s) | 17, 89 |
| BseYI | CCCAGC | 1 cut(s) | 128 |
| Bsh1236I | CGCG | 1 cut(s) | 375 |
| BsiHKAI | GWGCWC | 1 cut(s) | 404 |
| BsiHKCI | CYCGRG | 1 cut(s) | 392 |
| BsiSI | CCGG | 2 cut(s) | 327, 393 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 333 |
| BsmI | GAATGC | 1 cut(s) | 235 |
| BsoBI | CYCGRG | 1 cut(s) | 392 |
| Bsp1286I | GDGCHC | 2 cut(s) | 202, 404 |
| Bsp1407I | TGTACA | 1 cut(s) | 172 |
| Bsp143I | GATC | 2 cut(s) | 356, 653 |
| BspACI | CCGC | 2 cut(s) | 373, 375 |
| BspCNI | CTCAG | 2 cut(s) | 372, 490 |
| BspFNI | CGCG | 1 cut(s) | 375 |
| BspLI | GGNNCC | 1 cut(s) | 446 |
| BspPI | GGATC | 1 cut(s) | 661 |
| BspQI | GCTCTTC | 1 cut(s) | 503 |
| BsrGI | TGTACA | 1 cut(s) | 172 |
| BsrI | ACTGG | 2 cut(s) | 445, 587 |
| BssECI | CCNNGG | 3 cut(s) | 373, 392, 514 |
| BssMI | GATC | 2 cut(s) | 356, 653 |
| BssT1I | CCWWGG | 1 cut(s) | 514 |
| Bst2UI | CCWGG | 1 cut(s) | 84 |
| Bst6I | CTCTTC | 1 cut(s) | 503 |
| BstAUI | TGTACA | 1 cut(s) | 172 |
| BstC8I | GCNNGC | 1 cut(s) | 631 |
| BstDEI | CTNAG | 2 cut(s) | 380, 498 |
| BstDSI | CCRYGG | 1 cut(s) | 373 |
| BstF5I | GGATG | 3 cut(s) | 454, 556, 565 |
| BstFNI | CGCG | 1 cut(s) | 375 |
| BstKTI | GATC | 2 cut(s) | 359, 656 |
| BstMBI | GATC | 2 cut(s) | 356, 653 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 175 |
| BstNI | CCWGG | 1 cut(s) | 84 |
| BstNSI | RCATGY | 1 cut(s) | 173 |
| BstSCI | CCNGG | 4 cut(s) | 82, 326, 391, 392 |
| BstSLI | GKGCMC | 1 cut(s) | 202 |
| BstUI | CGCG | 1 cut(s) | 375 |
| BstV1I | GCAGC | 2 cut(s) | 17, 89 |
| BstV2I | GAAGAC | 1 cut(s) | 392 |
| BstX2I | RGATCY | 2 cut(s) | 356, 653 |
| BstYI | RGATCY | 2 cut(s) | 356, 653 |
| BtgI | CCRYGG | 1 cut(s) | 373 |
| BtsCI | GGATG | 3 cut(s) | 454, 556, 565 |
| Cac8I | GCNNGC | 1 cut(s) | 631 |
| Cfr42I | CCGCGG | 1 cut(s) | 376 |
| Cfr9I | CCCGGG | 1 cut(s) | 392 |
| Csp6I | GTAC | 2 cut(s) | 46, 173 |
| CviAII | CATG | 3 cut(s) | 106, 170, 224 |
| CviQI | GTAC | 2 cut(s) | 46, 173 |
| DdeI | CTNAG | 2 cut(s) | 380, 498 |
| DpnI | GATC | 2 cut(s) | 358, 655 |
| DpnII | GATC | 2 cut(s) | 356, 653 |
| DraI | TTTAAA | 1 cut(s) | 90 |
| Eam1104I | CTCTTC | 1 cut(s) | 503 |
| EarI | CTCTTC | 1 cut(s) | 503 |
| Ecl136II | GAGCTC | 1 cut(s) | 402 |
| Eco130I | CCWWGG | 1 cut(s) | 514 |
| Eco24I | GRGCYC | 1 cut(s) | 404 |
| Eco53kI | GAGCTC | 1 cut(s) | 402 |
| Eco57I | CTGAAG | 2 cut(s) | 237, 517 |
| Eco88I | CYCGRG | 1 cut(s) | 392 |
| EcoICRI | GAGCTC | 1 cut(s) | 402 |
| EcoRII | CCWGG | 1 cut(s) | 82 |
| EcoT14I | CCWWGG | 1 cut(s) | 514 |
| EcoT22I | ATGCAT | 1 cut(s) | 171 |
| EcoT38I | GRGCYC | 1 cut(s) | 404 |
| ErhI | CCWWGG | 1 cut(s) | 514 |
| FaeI | CATG | 3 cut(s) | 109, 173, 227 |
| FatI | CATG | 3 cut(s) | 105, 169, 223 |
| FauNDI | CATATG | 1 cut(s) | 54 |
| Fnu4HI | GCNGC | 2 cut(s) | 6, 103 |
| FokI | GGATG | 3 cut(s) | 441, 563, 572 |
| FriOI | GRGCYC | 1 cut(s) | 404 |
| Fsp4HI | GCNGC | 2 cut(s) | 6, 103 |
| FspBI | CTAG | 1 cut(s) | 366 |
| GluI | GCNGC | 2 cut(s) | 6, 103 |
| GsaI | CCCAGC | 1 cut(s) | 132 |
| HapII | CCGG | 2 cut(s) | 327, 393 |
| Hin1II | CATG | 3 cut(s) | 109, 173, 227 |
| HincII | GTYRAC | 1 cut(s) | 415 |
| HindII | GTYRAC | 1 cut(s) | 415 |
| HinfI | GANTC | 4 cut(s) | 75, 275, 388, 620 |
| HpaI | GTTAAC | 1 cut(s) | 415 |
| HpaII | CCGG | 2 cut(s) | 327, 393 |
| HphI | GGTGA | 2 cut(s) | 50, 576 |
| Hpy166II | GTNNAC | 1 cut(s) | 415 |
| Hpy188I | TCNGA | 3 cut(s) | 256, 280, 653 |
| Hpy188III | TCNNGA | 2 cut(s) | 527, 660 |
| Hpy8I | GTNNAC | 1 cut(s) | 415 |
| HpyAV | CCTTC | 2 cut(s) | 251, 332 |
| HpyCH4V | TGCA | 4 cut(s) | 61, 105, 169, 547 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 175 |
| HpyF3I | CTNAG | 2 cut(s) | 380, 498 |
| Hsp92II | CATG | 3 cut(s) | 109, 173, 227 |
| KspAI | GTTAAC | 1 cut(s) | 415 |
| KspI | CCGCGG | 1 cut(s) | 376 |
| Kzo9I | GATC | 2 cut(s) | 356, 653 |
| LguI | GCTCTTC | 1 cut(s) | 503 |
| LmnI | GCTCC | 2 cut(s) | 399, 407 |
| Lsp1109I | GCAGC | 2 cut(s) | 17, 89 |
| LweI | GCATC | 3 cut(s) | 48, 172, 463 |
| MaeI | CTAG | 1 cut(s) | 366 |
| MalI | GATC | 2 cut(s) | 358, 655 |
| MboI | GATC | 2 cut(s) | 356, 653 |
| MboII | GAAGA | 3 cut(s) | 397, 520, 648 |
| MflI | RGATCY | 2 cut(s) | 356, 653 |
| MhlI | GDGCHC | 2 cut(s) | 202, 404 |
| MluCI | AATT | 3 cut(s) | 41, 236, 246 |
| MlyI | GAGTC | 1 cut(s) | 382 |
| MnlI | CCTC | 6 cut(s) | 28, 375, 480, 550, 592, 644 |
| Mph1103I | ATGCAT | 1 cut(s) | 171 |
| MseI | TTAA | 3 cut(s) | 89, 159, 414 |
| MslI | CAYNNNNRTG | 1 cut(s) | 228 |
| MspA1I | CMGCKG | 1 cut(s) | 375 |
| MspI | CCGG | 2 cut(s) | 327, 393 |
| MspR9I | CCNGG | 4 cut(s) | 84, 328, 393, 394 |
| Mva1269I | GAATGC | 1 cut(s) | 235 |
| MvaI | CCWGG | 1 cut(s) | 84 |
| MvnI | CGCG | 1 cut(s) | 375 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 175 |
| NciI | CCSGG | 3 cut(s) | 328, 393, 394 |
| NdeI | CATATG | 1 cut(s) | 54 |
| NdeII | GATC | 2 cut(s) | 356, 653 |
| NlaIII | CATG | 3 cut(s) | 109, 173, 227 |
| NlaIV | GGNNCC | 1 cut(s) | 446 |
| NsiI | ATGCAT | 1 cut(s) | 171 |
| NspI | RCATGY | 1 cut(s) | 173 |
| PciSI | GCTCTTC | 1 cut(s) | 503 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 561 |
| PctI | GAATGC | 1 cut(s) | 235 |
| PfeI | GAWTC | 3 cut(s) | 75, 275, 620 |
| PkrI | GCNGC | 2 cut(s) | 7, 104 |
| PleI | GAGTC | 1 cut(s) | 382 |
| PpsI | GAGTC | 1 cut(s) | 382 |
| Psp124BI | GAGCTC | 1 cut(s) | 404 |
| Psp6I | CCWGG | 1 cut(s) | 82 |
| PspFI | CCCAGC | 1 cut(s) | 128 |
| PspGI | CCWGG | 1 cut(s) | 82 |
| PspN4I | GGNNCC | 1 cut(s) | 446 |
| PsuI | RGATCY | 2 cut(s) | 356, 653 |
| RsaI | GTAC | 2 cut(s) | 47, 174 |
| RsaNI | GTAC | 2 cut(s) | 46, 173 |
| RseI | CAYNNNNRTG | 1 cut(s) | 228 |
| SacI | GAGCTC | 1 cut(s) | 404 |
| SacII | CCGCGG | 1 cut(s) | 376 |
| SapI | GCTCTTC | 1 cut(s) | 503 |
| SaqAI | TTAA | 3 cut(s) | 89, 159, 414 |
| SatI | GCNGC | 2 cut(s) | 6, 103 |
| Sau3AI | GATC | 2 cut(s) | 356, 653 |
| SchI | GAGTC | 1 cut(s) | 382 |
| ScrFI | CCNGG | 4 cut(s) | 84, 328, 393, 394 |
| SduI | GDGCHC | 2 cut(s) | 202, 404 |
| SetI | ASST | 7 cut(s) | 10, 25, 130, 343, 404, 539, 668 |
| SfaNI | GCATC | 3 cut(s) | 48, 172, 463 |
| Sfr303I | CCGCGG | 1 cut(s) | 376 |
| SgrBI | CCGCGG | 1 cut(s) | 376 |
| SmaI | CCCGGG | 1 cut(s) | 394 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 228 |
| Sse9I | AATT | 3 cut(s) | 41, 236, 246 |
| SsiI | CCGC | 2 cut(s) | 373, 375 |
| SspMI | CTAG | 1 cut(s) | 366 |
| SstI | GAGCTC | 1 cut(s) | 404 |
| StyD4I | CCNGG | 4 cut(s) | 82, 326, 391, 392 |
| StyI | CCWWGG | 1 cut(s) | 514 |
| TaqI | TCGA | 1 cut(s) | 555 |
| TasI | AATT | 3 cut(s) | 41, 236, 246 |
| TatI | WGTACW | 2 cut(s) | 45, 172 |
| TfiI | GAWTC | 3 cut(s) | 75, 275, 620 |
| Tru1I | TTAA | 3 cut(s) | 89, 159, 414 |
| Tru9I | TTAA | 3 cut(s) | 89, 159, 414 |
| TseI | GCWGC | 2 cut(s) | 5, 102 |
| TspDTI | ATGAA | 2 cut(s) | 41, 521 |
| TspMI | CCCGGG | 1 cut(s) | 392 |
| XceI | RCATGY | 1 cut(s) | 173 |
| XmaI | CCCGGG | 1 cut(s) | 392 |
| XspI | CTAG | 1 cut(s) | 366 |
| Zsp2I | ATGCAT | 1 cut(s) | 171 |