Rw3G024430

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
31442906 .. 31446380
3475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G024430.1

Sequence Viewer

Length: 750 bp
ATGGAACCACAAAACCGGCATCCAACCGAGGATGGAGGAAGTAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTCGCAGGAAGAGCAGTACTAGGTGGATTCCCACTACAGATCATATAAGAATCCTCAAGGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTATGGCAAGATCGAGTTCAAGAACGTCTATTATTGGTTTGTGAACCAAAGGGCTCTGGAGAAGCAGAAGAAGAGGTCCACTTCGGATATTCATGTGCCCATGCAAAGATCAGGGCACTATATTAACTTTGGATCCTCTGCAGCTGCTTCTGCTTCTTCCGCTGGTGTGATGATTGCTTTTAACGTGCAGATGGGGAACTATGGCGGTTATGGATCCATGAACATGGAGAAGAGTTGTGAGCCCCTGAAAAGTTTATCGAGCTTAAATGAAATAAGTGTTAGGGATTGTTCAATCTCAGCTGGAAGGGGAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGATCACCAAGAGATTGAAACCCTTTCACTATTTCCTATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACACTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCCAGAGCCGCTGA

Protein Analysis

249

Amino Acids

27.61

Weight (kDa)

8.83

Isoelectric Point (pI)

59.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 31 - 91 2e-07 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17950
fragaria_vesca FvH4_1g11910 FvH4_3g04400
malus_domestica MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica Prupe.7G167700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 366, 411, 666, 745
AclWI GGATC 5 cut(s) 194, 333, 346, 414, 427
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 617
AgsI TTSAA 3 cut(s) 226, 498, 593
AhlI ACTAGT 1 cut(s) 518
AleI CACNNNNGTG 1 cut(s) 675
AluBI AGCT 7 cut(s) 136, 199, 350, 468, 506, 700, 725
AluI AGCT 7 cut(s) 136, 199, 350, 468, 506, 700, 725
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 5 cut(s) 194, 333, 346, 414, 427
ApeKI GCWGC 3 cut(s) 50, 347, 350
Asp700I GAANNNNTTC 1 cut(s) 520
AspS9I GGNCC 2 cut(s) 159, 282
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 572, 632
AvaII GGWCC 2 cut(s) 159, 282
BaeGI GKGCMC 2 cut(s) 306, 324
BamHI GGATCC 2 cut(s) 338, 419
BanII GRGCYC 3 cut(s) 262, 450, 702
BbsI GAAGAC 1 cut(s) 650
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 3 cut(s) 62, 337, 359
BccI CCATC 3 cut(s) 26, 391, 650
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 518
BfaI CTAG 2 cut(s) 93, 519
BfmI CTRYAG 3 cut(s) 108, 168, 345
BisI GCNGC 4 cut(s) 51, 348, 351, 745
BlpI GCTNAGC 1 cut(s) 701
BlsI GCNGC 4 cut(s) 52, 349, 352, 746
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 2 cut(s) 159, 282
BmgT120I GGNCC 2 cut(s) 159, 282
BmiI GGNNCC 4 cut(s) 6, 161, 340, 421
BmrFI CCNGG 1 cut(s) 55
BmsI GCATC 1 cut(s) 28
BpiI GAAGAC 1 cut(s) 650
BpmI CTGGAG 2 cut(s) 179, 284
Bpu1102I GCTNAGC 1 cut(s) 701
BpuEI CTTGAG 2 cut(s) 113, 716
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 617
Bse118I RCCGGY 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 19, 37
BseLI CCNNNNNNNGG 1 cut(s) 617
BseMII CTCAG 2 cut(s) 516, 715
BseRI GAGGAG 1 cut(s) 585
BseSI GKGCMC 2 cut(s) 306, 324
BseXI GCAGC 3 cut(s) 62, 337, 359
BsgI GTGCAG 1 cut(s) 413
BsiHKAI GWGCWC 1 cut(s) 702
BsiSI CCGG 2 cut(s) 16, 54
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 617
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 145
Bsp1286I GDGCHC 5 cut(s) 262, 306, 324, 450, 702
Bsp143I GATC 7 cut(s) 112, 186, 216, 314, 338, 419, 577
Bsp1720I GCTNAGC 1 cut(s) 701
BspACI CCGC 4 cut(s) 366, 411, 666, 745
BspCNI CTCAG 2 cut(s) 515, 714
BspLI GGNNCC 4 cut(s) 6, 161, 340, 421
BspMAI CTGCAG 1 cut(s) 349
BspPI GGATC 5 cut(s) 194, 333, 346, 414, 427
BspQI GCTCTTC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 7 cut(s) 112, 186, 216, 314, 338, 419, 577
Bst4CI ACNGT 1 cut(s) 674
Bst6I CTCTTC 3 cut(s) 77, 272, 431
BstDEI CTNAG 2 cut(s) 502, 701
BstF5I GGATG 2 cut(s) 19, 37
BstKTI GATC 7 cut(s) 115, 189, 219, 317, 341, 422, 580
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 7 cut(s) 112, 186, 216, 314, 338, 419, 577
BstMWI GCNNNNNNNGC 4 cut(s) 84, 356, 365, 711
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 3 cut(s) 108, 168, 345
BstSLI GKGCMC 2 cut(s) 306, 324
BstV1I GCAGC 3 cut(s) 62, 337, 359
BstV2I GAAGAC 1 cut(s) 650
BstX2I RGATCY 3 cut(s) 186, 338, 419
BstXI CCANNNNNNTGG 1 cut(s) 430
BstYI RGATCY 3 cut(s) 186, 338, 419
BtsCI GGATG 2 cut(s) 19, 37
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 159, 282
Csp6I GTAC 1 cut(s) 90
CviAII CATG 9 cut(s) 70, 299, 307, 424, 430, 538, 559, 617, 640
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 2 cut(s) 502, 701
DpnI GATC 7 cut(s) 114, 188, 218, 316, 340, 421, 579
DpnII GATC 7 cut(s) 112, 186, 216, 314, 338, 419, 577
Eam1104I CTCTTC 3 cut(s) 77, 272, 431
EarI CTCTTC 3 cut(s) 77, 272, 431
Ecl136II GAGCTC 1 cut(s) 700
Eco24I GRGCYC 3 cut(s) 262, 450, 702
Eco47I GGWCC 2 cut(s) 159, 282
Eco53kI GAGCTC 1 cut(s) 700
EcoICRI GAGCTC 1 cut(s) 700
EcoO109I RGGNCCY 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 618
EcoT38I GRGCYC 3 cut(s) 262, 450, 702
FaeI CATG 9 cut(s) 73, 302, 310, 427, 433, 541, 562, 620, 643
FaqI GGGAC 1 cut(s) 145
FatI CATG 9 cut(s) 69, 298, 306, 423, 429, 537, 558, 616, 639
Fnu4HI GCNGC 4 cut(s) 51, 348, 351, 745
FokI GGATG 2 cut(s) 6, 44
FriOI GRGCYC 3 cut(s) 262, 450, 702
Fsp4HI GCNGC 4 cut(s) 51, 348, 351, 745
FspBI CTAG 2 cut(s) 93, 519
GluI GCNGC 4 cut(s) 51, 348, 351, 745
GsuI CTGGAG 2 cut(s) 179, 284
HapII CCGG 2 cut(s) 16, 54
Hin1II CATG 9 cut(s) 73, 302, 310, 427, 433, 541, 562, 620, 643
HinfI GANTC 3 cut(s) 100, 123, 178
HpaII CCGG 2 cut(s) 16, 54
HphI GGTGA 2 cut(s) 572, 632
Hpy166II GTNNAC 2 cut(s) 250, 285
Hpy188I TCNGA 3 cut(s) 183, 292, 655
Hpy188III TCNNGA 3 cut(s) 226, 263, 739
Hpy8I GTNNAC 2 cut(s) 250, 285
HpyAV CCTTC 1 cut(s) 504
HpyCH4III ACNGT 1 cut(s) 674
HpyCH4IV ACGT 2 cut(s) 231, 390
HpyCH4V TGCA 4 cut(s) 310, 347, 394, 616
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 356, 365, 711
HpyF3I CTNAG 2 cut(s) 502, 701
HpySE526I ACGT 2 cut(s) 231, 390
Hsp92II CATG 9 cut(s) 73, 302, 310, 427, 433, 541, 562, 620, 643
Kzo9I GATC 7 cut(s) 112, 186, 216, 314, 338, 419, 577
LguI GCTCTTC 1 cut(s) 77
LmnI GCTCC 1 cut(s) 133
Lsp1109I GCAGC 3 cut(s) 62, 337, 359
LweI GCATC 1 cut(s) 28
MaeI CTAG 2 cut(s) 93, 519
MaeII ACGT 2 cut(s) 231, 390
MaeIII GTNAC 2 cut(s) 41, 668
MalI GATC 7 cut(s) 114, 188, 218, 316, 340, 421, 579
MboI GATC 7 cut(s) 112, 186, 216, 314, 338, 419, 577
MboII GAAGA 7 cut(s) 94, 286, 289, 354, 448, 587, 655
MflI RGATCY 3 cut(s) 186, 338, 419
MhlI GDGCHC 5 cut(s) 262, 306, 324, 450, 702
MmeI TCCRAC 1 cut(s) 47
Mph1103I ATGCAT 1 cut(s) 618
MroXI GAANNNNTTC 1 cut(s) 520
MseI TTAA 3 cut(s) 330, 387, 470
MslI CAYNNNNRTG 2 cut(s) 428, 675
MspA1I CMGCKG 5 cut(s) 199, 350, 368, 506, 747
MspI CCGG 2 cut(s) 16, 54
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 4 cut(s) 84, 356, 365, 711
NciI CCSGG 1 cut(s) 55
NdeII GATC 7 cut(s) 112, 186, 216, 314, 338, 419, 577
NlaIII CATG 9 cut(s) 73, 302, 310, 427, 433, 541, 562, 620, 643
NlaIV GGNNCC 4 cut(s) 6, 161, 340, 421
NmuCI GTSAC 1 cut(s) 668
NsiI ATGCAT 1 cut(s) 618
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 675
PciSI GCTCTTC 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 520
PfeI GAWTC 3 cut(s) 100, 123, 178
PkrI GCNGC 4 cut(s) 52, 349, 352, 746
PpuMI RGGWCCY 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 702
Psp5II RGGWCCY 1 cut(s) 159
PspN4I GGNNCC 4 cut(s) 6, 161, 340, 421
PspPI GGNCC 2 cut(s) 159, 282
PspPPI RGGWCCY 1 cut(s) 159
PsrI GAACNNNNNNTAC 2 cut(s) 508, 540
PstI CTGCAG 1 cut(s) 349
PsuI RGATCY 3 cut(s) 186, 338, 419
PvuII CAGCTG 3 cut(s) 199, 350, 506
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
RseI CAYNNNNRTG 2 cut(s) 428, 675
SacI GAGCTC 1 cut(s) 702
SapI GCTCTTC 1 cut(s) 77
SaqAI TTAA 3 cut(s) 330, 387, 470
SatI GCNGC 4 cut(s) 51, 348, 351, 745
Sau3AI GATC 7 cut(s) 112, 186, 216, 314, 338, 419, 577
Sau96I GGNCC 2 cut(s) 159, 282
ScaI AGTACT 1 cut(s) 91
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 5 cut(s) 262, 306, 324, 450, 702
SfaNI GCATC 1 cut(s) 28
SfcI CTRYAG 3 cut(s) 108, 168, 345
SinI GGWCC 2 cut(s) 159, 282
SmiMI CAYNNNNRTG 2 cut(s) 428, 675
SmlI CTYRAG 2 cut(s) 128, 695
SmoI CTYRAG 2 cut(s) 128, 695
SpeI ACTAGT 1 cut(s) 518
SsiI CCGC 4 cut(s) 366, 411, 666, 745
SspMI CTAG 2 cut(s) 93, 519
SstI GAGCTC 1 cut(s) 702
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 674
TaiI ACGT 2 cut(s) 234, 393
TaqI TCGA 2 cut(s) 219, 464
TatI WGTACW 1 cut(s) 89
TauI GCSGC 1 cut(s) 747
TfiI GAWTC 3 cut(s) 100, 123, 178
Tru1I TTAA 3 cut(s) 330, 387, 470
Tru9I TTAA 3 cut(s) 330, 387, 470
TseFI GTSAC 1 cut(s) 668
TseI GCWGC 3 cut(s) 50, 347, 350
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 6 cut(s) 287, 440, 489, 547, 554, 656
VpaK11BI GGWCC 2 cut(s) 159, 282
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 520
XspI CTAG 2 cut(s) 93, 519
ZrmI AGTACT 1 cut(s) 91
Zsp2I ATGCAT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.