Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Homeodomain | PF00046 | 31 - 91 | 2e-07 | Homeodomain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 366, 411, 666, 745 |
| AclWI | GGATC | 5 cut(s) | 194, 333, 346, 414, 427 |
| AfaI | GTAC | 1 cut(s) | 91 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 617 |
| AgsI | TTSAA | 3 cut(s) | 226, 498, 593 |
| AhlI | ACTAGT | 1 cut(s) | 518 |
| AleI | CACNNNNGTG | 1 cut(s) | 675 |
| AluBI | AGCT | 7 cut(s) | 136, 199, 350, 468, 506, 700, 725 |
| AluI | AGCT | 7 cut(s) | 136, 199, 350, 468, 506, 700, 725 |
| Alw21I | GWGCWC | 1 cut(s) | 702 |
| Alw26I | GTCTC | 1 cut(s) | 197 |
| AlwI | GGATC | 5 cut(s) | 194, 333, 346, 414, 427 |
| ApeKI | GCWGC | 3 cut(s) | 50, 347, 350 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 520 |
| AspS9I | GGNCC | 2 cut(s) | 159, 282 |
| AsuC2I | CCSGG | 1 cut(s) | 55 |
| AsuHPI | GGTGA | 2 cut(s) | 572, 632 |
| AvaII | GGWCC | 2 cut(s) | 159, 282 |
| BaeGI | GKGCMC | 2 cut(s) | 306, 324 |
| BamHI | GGATCC | 2 cut(s) | 338, 419 |
| BanII | GRGCYC | 3 cut(s) | 262, 450, 702 |
| BbsI | GAAGAC | 1 cut(s) | 650 |
| Bbv12I | GWGCWC | 1 cut(s) | 702 |
| BbvI | GCAGC | 3 cut(s) | 62, 337, 359 |
| BccI | CCATC | 3 cut(s) | 26, 391, 650 |
| BcnI | CCSGG | 1 cut(s) | 55 |
| BcoDI | GTCTC | 1 cut(s) | 197 |
| BcuI | ACTAGT | 1 cut(s) | 518 |
| BfaI | CTAG | 2 cut(s) | 93, 519 |
| BfmI | CTRYAG | 3 cut(s) | 108, 168, 345 |
| BisI | GCNGC | 4 cut(s) | 51, 348, 351, 745 |
| BlpI | GCTNAGC | 1 cut(s) | 701 |
| BlsI | GCNGC | 4 cut(s) | 52, 349, 352, 746 |
| BmcAI | AGTACT | 1 cut(s) | 91 |
| Bme1390I | CCNGG | 1 cut(s) | 55 |
| Bme18I | GGWCC | 2 cut(s) | 159, 282 |
| BmgT120I | GGNCC | 2 cut(s) | 159, 282 |
| BmiI | GGNNCC | 4 cut(s) | 6, 161, 340, 421 |
| BmrFI | CCNGG | 1 cut(s) | 55 |
| BmsI | GCATC | 1 cut(s) | 28 |
| BpiI | GAAGAC | 1 cut(s) | 650 |
| BpmI | CTGGAG | 2 cut(s) | 179, 284 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 701 |
| BpuEI | CTTGAG | 2 cut(s) | 113, 716 |
| BpuMI | CCSGG | 1 cut(s) | 55 |
| BsaJI | CCNNGG | 1 cut(s) | 27 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 617 |
| Bse118I | RCCGGY | 1 cut(s) | 15 |
| BseDI | CCNNGG | 1 cut(s) | 27 |
| BseGI | GGATG | 2 cut(s) | 19, 37 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 617 |
| BseMII | CTCAG | 2 cut(s) | 516, 715 |
| BseRI | GAGGAG | 1 cut(s) | 585 |
| BseSI | GKGCMC | 2 cut(s) | 306, 324 |
| BseXI | GCAGC | 3 cut(s) | 62, 337, 359 |
| BsgI | GTGCAG | 1 cut(s) | 413 |
| BsiHKAI | GWGCWC | 1 cut(s) | 702 |
| BsiSI | CCGG | 2 cut(s) | 16, 54 |
| BslFI | GGGAC | 1 cut(s) | 145 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 617 |
| BsmAI | GTCTC | 1 cut(s) | 197 |
| BsmFI | GGGAC | 1 cut(s) | 145 |
| Bsp1286I | GDGCHC | 5 cut(s) | 262, 306, 324, 450, 702 |
| Bsp143I | GATC | 7 cut(s) | 112, 186, 216, 314, 338, 419, 577 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 701 |
| BspACI | CCGC | 4 cut(s) | 366, 411, 666, 745 |
| BspCNI | CTCAG | 2 cut(s) | 515, 714 |
| BspLI | GGNNCC | 4 cut(s) | 6, 161, 340, 421 |
| BspMAI | CTGCAG | 1 cut(s) | 349 |
| BspPI | GGATC | 5 cut(s) | 194, 333, 346, 414, 427 |
| BspQI | GCTCTTC | 1 cut(s) | 77 |
| BsrFI | RCCGGY | 1 cut(s) | 15 |
| BssAI | RCCGGY | 1 cut(s) | 15 |
| BssECI | CCNNGG | 1 cut(s) | 27 |
| BssMI | GATC | 7 cut(s) | 112, 186, 216, 314, 338, 419, 577 |
| Bst4CI | ACNGT | 1 cut(s) | 674 |
| Bst6I | CTCTTC | 3 cut(s) | 77, 272, 431 |
| BstDEI | CTNAG | 2 cut(s) | 502, 701 |
| BstF5I | GGATG | 2 cut(s) | 19, 37 |
| BstKTI | GATC | 7 cut(s) | 115, 189, 219, 317, 341, 422, 580 |
| BstMAI | GTCTC | 1 cut(s) | 197 |
| BstMBI | GATC | 7 cut(s) | 112, 186, 216, 314, 338, 419, 577 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 84, 356, 365, 711 |
| BstNSI | RCATGY | 1 cut(s) | 73 |
| BstSCI | CCNGG | 1 cut(s) | 53 |
| BstSFI | CTRYAG | 3 cut(s) | 108, 168, 345 |
| BstSLI | GKGCMC | 2 cut(s) | 306, 324 |
| BstV1I | GCAGC | 3 cut(s) | 62, 337, 359 |
| BstV2I | GAAGAC | 1 cut(s) | 650 |
| BstX2I | RGATCY | 3 cut(s) | 186, 338, 419 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 430 |
| BstYI | RGATCY | 3 cut(s) | 186, 338, 419 |
| BtsCI | GGATG | 2 cut(s) | 19, 37 |
| Cfr10I | RCCGGY | 1 cut(s) | 15 |
| Cfr13I | GGNCC | 2 cut(s) | 159, 282 |
| Csp6I | GTAC | 1 cut(s) | 90 |
| CviAII | CATG | 9 cut(s) | 70, 299, 307, 424, 430, 538, 559, 617, 640 |
| CviQI | GTAC | 1 cut(s) | 90 |
| DdeI | CTNAG | 2 cut(s) | 502, 701 |
| DpnI | GATC | 7 cut(s) | 114, 188, 218, 316, 340, 421, 579 |
| DpnII | GATC | 7 cut(s) | 112, 186, 216, 314, 338, 419, 577 |
| Eam1104I | CTCTTC | 3 cut(s) | 77, 272, 431 |
| EarI | CTCTTC | 3 cut(s) | 77, 272, 431 |
| Ecl136II | GAGCTC | 1 cut(s) | 700 |
| Eco24I | GRGCYC | 3 cut(s) | 262, 450, 702 |
| Eco47I | GGWCC | 2 cut(s) | 159, 282 |
| Eco53kI | GAGCTC | 1 cut(s) | 700 |
| EcoICRI | GAGCTC | 1 cut(s) | 700 |
| EcoO109I | RGGNCCY | 1 cut(s) | 159 |
| EcoT22I | ATGCAT | 1 cut(s) | 618 |
| EcoT38I | GRGCYC | 3 cut(s) | 262, 450, 702 |
| FaeI | CATG | 9 cut(s) | 73, 302, 310, 427, 433, 541, 562, 620, 643 |
| FaqI | GGGAC | 1 cut(s) | 145 |
| FatI | CATG | 9 cut(s) | 69, 298, 306, 423, 429, 537, 558, 616, 639 |
| Fnu4HI | GCNGC | 4 cut(s) | 51, 348, 351, 745 |
| FokI | GGATG | 2 cut(s) | 6, 44 |
| FriOI | GRGCYC | 3 cut(s) | 262, 450, 702 |
| Fsp4HI | GCNGC | 4 cut(s) | 51, 348, 351, 745 |
| FspBI | CTAG | 2 cut(s) | 93, 519 |
| GluI | GCNGC | 4 cut(s) | 51, 348, 351, 745 |
| GsuI | CTGGAG | 2 cut(s) | 179, 284 |
| HapII | CCGG | 2 cut(s) | 16, 54 |
| Hin1II | CATG | 9 cut(s) | 73, 302, 310, 427, 433, 541, 562, 620, 643 |
| HinfI | GANTC | 3 cut(s) | 100, 123, 178 |
| HpaII | CCGG | 2 cut(s) | 16, 54 |
| HphI | GGTGA | 2 cut(s) | 572, 632 |
| Hpy166II | GTNNAC | 2 cut(s) | 250, 285 |
| Hpy188I | TCNGA | 3 cut(s) | 183, 292, 655 |
| Hpy188III | TCNNGA | 3 cut(s) | 226, 263, 739 |
| Hpy8I | GTNNAC | 2 cut(s) | 250, 285 |
| HpyAV | CCTTC | 1 cut(s) | 504 |
| HpyCH4III | ACNGT | 1 cut(s) | 674 |
| HpyCH4IV | ACGT | 2 cut(s) | 231, 390 |
| HpyCH4V | TGCA | 4 cut(s) | 310, 347, 394, 616 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 84, 356, 365, 711 |
| HpyF3I | CTNAG | 2 cut(s) | 502, 701 |
| HpySE526I | ACGT | 2 cut(s) | 231, 390 |
| Hsp92II | CATG | 9 cut(s) | 73, 302, 310, 427, 433, 541, 562, 620, 643 |
| Kzo9I | GATC | 7 cut(s) | 112, 186, 216, 314, 338, 419, 577 |
| LguI | GCTCTTC | 1 cut(s) | 77 |
| LmnI | GCTCC | 1 cut(s) | 133 |
| Lsp1109I | GCAGC | 3 cut(s) | 62, 337, 359 |
| LweI | GCATC | 1 cut(s) | 28 |
| MaeI | CTAG | 2 cut(s) | 93, 519 |
| MaeII | ACGT | 2 cut(s) | 231, 390 |
| MaeIII | GTNAC | 2 cut(s) | 41, 668 |
| MalI | GATC | 7 cut(s) | 114, 188, 218, 316, 340, 421, 579 |
| MboI | GATC | 7 cut(s) | 112, 186, 216, 314, 338, 419, 577 |
| MboII | GAAGA | 7 cut(s) | 94, 286, 289, 354, 448, 587, 655 |
| MflI | RGATCY | 3 cut(s) | 186, 338, 419 |
| MhlI | GDGCHC | 5 cut(s) | 262, 306, 324, 450, 702 |
| MmeI | TCCRAC | 1 cut(s) | 47 |
| Mph1103I | ATGCAT | 1 cut(s) | 618 |
| MroXI | GAANNNNTTC | 1 cut(s) | 520 |
| MseI | TTAA | 3 cut(s) | 330, 387, 470 |
| MslI | CAYNNNNRTG | 2 cut(s) | 428, 675 |
| MspA1I | CMGCKG | 5 cut(s) | 199, 350, 368, 506, 747 |
| MspI | CCGG | 2 cut(s) | 16, 54 |
| MspR9I | CCNGG | 1 cut(s) | 55 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 84, 356, 365, 711 |
| NciI | CCSGG | 1 cut(s) | 55 |
| NdeII | GATC | 7 cut(s) | 112, 186, 216, 314, 338, 419, 577 |
| NlaIII | CATG | 9 cut(s) | 73, 302, 310, 427, 433, 541, 562, 620, 643 |
| NlaIV | GGNNCC | 4 cut(s) | 6, 161, 340, 421 |
| NmuCI | GTSAC | 1 cut(s) | 668 |
| NsiI | ATGCAT | 1 cut(s) | 618 |
| NspI | RCATGY | 1 cut(s) | 73 |
| OliI | CACNNNNGTG | 1 cut(s) | 675 |
| PciSI | GCTCTTC | 1 cut(s) | 77 |
| PdmI | GAANNNNTTC | 1 cut(s) | 520 |
| PfeI | GAWTC | 3 cut(s) | 100, 123, 178 |
| PkrI | GCNGC | 4 cut(s) | 52, 349, 352, 746 |
| PpuMI | RGGWCCY | 1 cut(s) | 159 |
| Psp124BI | GAGCTC | 1 cut(s) | 702 |
| Psp5II | RGGWCCY | 1 cut(s) | 159 |
| PspN4I | GGNNCC | 4 cut(s) | 6, 161, 340, 421 |
| PspPI | GGNCC | 2 cut(s) | 159, 282 |
| PspPPI | RGGWCCY | 1 cut(s) | 159 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 508, 540 |
| PstI | CTGCAG | 1 cut(s) | 349 |
| PsuI | RGATCY | 3 cut(s) | 186, 338, 419 |
| PvuII | CAGCTG | 3 cut(s) | 199, 350, 506 |
| RsaI | GTAC | 1 cut(s) | 91 |
| RsaNI | GTAC | 1 cut(s) | 90 |
| RseI | CAYNNNNRTG | 2 cut(s) | 428, 675 |
| SacI | GAGCTC | 1 cut(s) | 702 |
| SapI | GCTCTTC | 1 cut(s) | 77 |
| SaqAI | TTAA | 3 cut(s) | 330, 387, 470 |
| SatI | GCNGC | 4 cut(s) | 51, 348, 351, 745 |
| Sau3AI | GATC | 7 cut(s) | 112, 186, 216, 314, 338, 419, 577 |
| Sau96I | GGNCC | 2 cut(s) | 159, 282 |
| ScaI | AGTACT | 1 cut(s) | 91 |
| ScrFI | CCNGG | 1 cut(s) | 55 |
| SduI | GDGCHC | 5 cut(s) | 262, 306, 324, 450, 702 |
| SfaNI | GCATC | 1 cut(s) | 28 |
| SfcI | CTRYAG | 3 cut(s) | 108, 168, 345 |
| SinI | GGWCC | 2 cut(s) | 159, 282 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 428, 675 |
| SmlI | CTYRAG | 2 cut(s) | 128, 695 |
| SmoI | CTYRAG | 2 cut(s) | 128, 695 |
| SpeI | ACTAGT | 1 cut(s) | 518 |
| SsiI | CCGC | 4 cut(s) | 366, 411, 666, 745 |
| SspMI | CTAG | 2 cut(s) | 93, 519 |
| SstI | GAGCTC | 1 cut(s) | 702 |
| StyD4I | CCNGG | 1 cut(s) | 53 |
| TaaI | ACNGT | 1 cut(s) | 674 |
| TaiI | ACGT | 2 cut(s) | 234, 393 |
| TaqI | TCGA | 2 cut(s) | 219, 464 |
| TatI | WGTACW | 1 cut(s) | 89 |
| TauI | GCSGC | 1 cut(s) | 747 |
| TfiI | GAWTC | 3 cut(s) | 100, 123, 178 |
| Tru1I | TTAA | 3 cut(s) | 330, 387, 470 |
| Tru9I | TTAA | 3 cut(s) | 330, 387, 470 |
| TseFI | GTSAC | 1 cut(s) | 668 |
| TseI | GCWGC | 3 cut(s) | 50, 347, 350 |
| Tsp45I | GTSAC | 1 cut(s) | 668 |
| TspDTI | ATGAA | 6 cut(s) | 287, 440, 489, 547, 554, 656 |
| VpaK11BI | GGWCC | 2 cut(s) | 159, 282 |
| XceI | RCATGY | 1 cut(s) | 73 |
| XmnI | GAANNNNTTC | 1 cut(s) | 520 |
| XspI | CTAG | 2 cut(s) | 93, 519 |
| ZrmI | AGTACT | 1 cut(s) | 91 |
| Zsp2I | ATGCAT | 1 cut(s) | 618 |