Rmu_ssc0000213.1_g000057

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000213.1
Physical Location & Seq
Reverse (-)
226141 .. 226923
783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000213.1_g000057.1.cds

Sequence Viewer

Length: 783 bp
atggaaccacaaacccagcaaccaaccgaggatggaggaagcaacaaagcagccgggagtagtgctaacatgcttcgcaagaagagcagtactaggtggattcccacgacagatcatataagaatcctcaaggagcttttctacaacaagggagttaggtccctaactatagagcaggttcagaggatctgtctccagctgaaatggtacggcaagatcgagttcaagaatgtctattattggttcgtgaaccaaagggctcgggagaagcagaagaagaagtccacttcggatgttcatgtgcccatgcaaagatcagggcttgttggtgatgacaatgttaccaattggaaacatgaggatcagtatattaactttggatcttctgcccctgcttctgcttctgcttcttccgctagtgtgatgattgcttttaacgggcagatagggaactatggcggttatgaatccatgaacatggagaagagtgctagggattgttcaatctcagctggagggggaactagttcttctttctttgatatgaatgtagaacaaactttcatggaacaaagaggagaagatcaccaggagattgaaaccctttcactgttgcccgtgcatggtgaggacatctttggcaacatgaagactacttccgatggaggtggcgatcacggtggtggctctcacacttcccttgagctcagcctttcctgcgagggcaaagctggaaaaagtttccggagccgctggttcggcttagtagcttcgcgagtgtag

Protein Analysis

260

Amino Acids

28.77

Weight (kDa)

7.74

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17950
fragaria_vesca FvH4_1g11910 FvH4_3g04400
malus_domestica MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica Prupe.7G167700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 166
AccII CGCG 1 cut(s) 775
AccIII TCCGGA 1 cut(s) 744
AciI CCGC 3 cut(s) 414, 459, 751
AclWI GGATC 3 cut(s) 194, 369, 388
AfaI GTAC 2 cut(s) 91, 209
AfiI CCNNNNNNNGG 1 cut(s) 623
AgsI TTSAA 3 cut(s) 226, 504, 599
AhlI ACTAGT 1 cut(s) 524
AjnI CCWGG 1 cut(s) 588
AleI CACNNNNGTG 1 cut(s) 681
AluBI AGCT 6 cut(s) 136, 199, 512, 706, 731, 770
AluI AGCT 6 cut(s) 136, 199, 512, 706, 731, 770
Alw21I GWGCWC 1 cut(s) 708
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 3 cut(s) 194, 369, 388
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 744
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 526
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 3 cut(s) 341, 578, 638
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 306
BanII GRGCYC 2 cut(s) 262, 708
BbsI GAAGAC 1 cut(s) 656
Bbv12I GWGCWC 1 cut(s) 708
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 26, 656
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 590
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 1 cut(s) 524
BfaI CTAG 4 cut(s) 93, 417, 492, 525
BfmI CTRYAG 1 cut(s) 168
BfuAI ACCTGC 1 cut(s) 166
BisI GCNGC 2 cut(s) 51, 751
BlpI GCTNAGC 1 cut(s) 707
BlsI GCNGC 2 cut(s) 52, 752
BmcAI AGTACT 1 cut(s) 91
Bme1390I CCNGG 2 cut(s) 55, 590
Bme18I GGWCC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 3 cut(s) 6, 161, 749
BmrFI CCNGG 2 cut(s) 55, 590
BpiI GAAGAC 1 cut(s) 656
BpmI CTGGAG 2 cut(s) 179, 534
Bpu1102I GCTNAGC 1 cut(s) 707
BpuEI CTTGAG 2 cut(s) 113, 722
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 744
Bsc4I CCNNNNNNNGG 1 cut(s) 623
BseAI TCCGGA 1 cut(s) 744
BseBI CCWGG 1 cut(s) 590
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 298
BseLI CCNNNNNNNGG 1 cut(s) 623
BseMII CTCAG 2 cut(s) 522, 721
BseRI GAGGAG 1 cut(s) 591
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
Bsh1236I CGCG 1 cut(s) 775
BsiHKAI GWGCWC 1 cut(s) 708
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 2 cut(s) 54, 745
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 623
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 3 cut(s) 262, 306, 708
Bsp13I TCCGGA 1 cut(s) 744
Bsp143I GATC 8 cut(s) 112, 186, 216, 314, 361, 380, 583, 673
Bsp1720I GCTNAGC 1 cut(s) 707
Bsp68I TCGCGA 1 cut(s) 775
BspACI CCGC 3 cut(s) 414, 459, 751
BspCNI CTCAG 2 cut(s) 521, 720
BspEI TCCGGA 1 cut(s) 744
BspFNI CGCG 1 cut(s) 775
BspLI GGNNCC 3 cut(s) 6, 161, 749
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 3 cut(s) 194, 369, 388
BspQI GCTCTTC 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 8 cut(s) 112, 186, 216, 314, 361, 380, 583, 673
Bst2UI CCWGG 1 cut(s) 590
Bst4CI ACNGT 2 cut(s) 612, 680
Bst6I CTCTTC 2 cut(s) 77, 479
BstDEI CTNAG 3 cut(s) 508, 707, 763
BstF5I GGATG 2 cut(s) 37, 298
BstFNI CGCG 1 cut(s) 775
BstKTI GATC 8 cut(s) 115, 189, 219, 317, 364, 383, 586, 676
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 8 cut(s) 112, 186, 216, 314, 361, 380, 583, 673
BstMWI GCNNNNNNNGC 4 cut(s) 84, 413, 717, 759
BstNI CCWGG 1 cut(s) 590
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 53, 588
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 1 cut(s) 775
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 656
BstX2I RGATCY 2 cut(s) 186, 380
BstXI CCANNNNNNTGG 1 cut(s) 478
BstYI RGATCY 2 cut(s) 186, 380
BtsCI GGATG 2 cut(s) 37, 298
BtsIMutI CAGTG 1 cut(s) 608
BtuMI TCGCGA 1 cut(s) 775
BveI ACCTGC 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 159
Csp6I GTAC 2 cut(s) 90, 208
CviAII CATG 9 cut(s) 70, 299, 307, 356, 472, 478, 565, 623, 646
CviQI GTAC 2 cut(s) 90, 208
DdeI CTNAG 3 cut(s) 508, 707, 763
DpnI GATC 8 cut(s) 114, 188, 218, 316, 363, 382, 585, 675
DpnII GATC 8 cut(s) 112, 186, 216, 314, 361, 380, 583, 673
Eam1104I CTCTTC 2 cut(s) 77, 479
EarI CTCTTC 2 cut(s) 77, 479
Ecl136II GAGCTC 1 cut(s) 706
Eco24I GRGCYC 2 cut(s) 262, 708
Eco47I GGWCC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 706
Eco88I CYCGRG 1 cut(s) 261
EcoICRI GAGCTC 1 cut(s) 706
EcoO109I RGGNCCY 1 cut(s) 159
EcoRII CCWGG 1 cut(s) 588
EcoT38I GRGCYC 2 cut(s) 262, 708
FaeI CATG 9 cut(s) 73, 302, 310, 359, 475, 481, 568, 626, 649
FaqI GGGAC 1 cut(s) 145
FatI CATG 9 cut(s) 69, 298, 306, 355, 471, 477, 564, 622, 645
Fnu4HI GCNGC 2 cut(s) 51, 751
FokI GGATG 2 cut(s) 44, 305
FriOI GRGCYC 2 cut(s) 262, 708
Fsp4HI GCNGC 2 cut(s) 51, 751
FspBI CTAG 4 cut(s) 93, 417, 492, 525
GluI GCNGC 2 cut(s) 51, 751
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 2 cut(s) 179, 534
HapII CCGG 2 cut(s) 54, 745
Hin1II CATG 9 cut(s) 73, 302, 310, 359, 475, 481, 568, 626, 649
HinfI GANTC 3 cut(s) 100, 123, 467
HpaII CCGG 2 cut(s) 54, 745
HphI GGTGA 3 cut(s) 341, 578, 638
Hpy166II GTNNAC 2 cut(s) 250, 285
Hpy188I TCNGA 3 cut(s) 183, 292, 661
Hpy188III TCNNGA 5 cut(s) 226, 247, 263, 745, 774
Hpy8I GTNNAC 2 cut(s) 250, 285
HpyCH4III ACNGT 2 cut(s) 612, 680
HpyCH4V TGCA 2 cut(s) 310, 622
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 413, 717, 759
HpyF3I CTNAG 3 cut(s) 508, 707, 763
Hsp92II CATG 9 cut(s) 73, 302, 310, 359, 475, 481, 568, 626, 649
Kpn2I TCCGGA 1 cut(s) 744
Kzo9I GATC 8 cut(s) 112, 186, 216, 314, 361, 380, 583, 673
LguI GCTCTTC 1 cut(s) 77
LmnI GCTCC 2 cut(s) 133, 747
Lsp1109I GCAGC 1 cut(s) 62
MaeI CTAG 4 cut(s) 93, 417, 492, 525
MaeIII GTNAC 1 cut(s) 340
MalI GATC 8 cut(s) 114, 188, 218, 316, 363, 382, 585, 675
MboI GATC 8 cut(s) 112, 186, 216, 314, 361, 380, 583, 673
MboII GAAGA 9 cut(s) 94, 286, 289, 375, 402, 496, 522, 593, 661
MfeI CAATTG 1 cut(s) 346
MflI RGATCY 2 cut(s) 186, 380
MhlI GDGCHC 3 cut(s) 262, 306, 708
MluCI AATT 1 cut(s) 346
MroI TCCGGA 1 cut(s) 744
MroXI GAANNNNTTC 1 cut(s) 526
MseI TTAA 2 cut(s) 372, 435
MslI CAYNNNNRTG 2 cut(s) 476, 681
MspA1I CMGCKG 3 cut(s) 199, 512, 753
MspI CCGG 2 cut(s) 54, 745
MspR9I CCNGG 2 cut(s) 55, 590
MunI CAATTG 1 cut(s) 346
MvaI CCWGG 1 cut(s) 590
MvnI CGCG 1 cut(s) 775
MwoI GCNNNNNNNGC 4 cut(s) 84, 413, 717, 759
NciI CCSGG 1 cut(s) 55
NdeII GATC 8 cut(s) 112, 186, 216, 314, 361, 380, 583, 673
NlaIII CATG 9 cut(s) 73, 302, 310, 359, 475, 481, 568, 626, 649
NlaIV GGNNCC 3 cut(s) 6, 161, 749
NruI TCGCGA 1 cut(s) 775
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 681
PciSI GCTCTTC 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 526
PfeI GAWTC 3 cut(s) 100, 123, 467
PkrI GCNGC 2 cut(s) 52, 752
PpuMI RGGWCCY 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 708
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 588
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 588
PspN4I GGNNCC 3 cut(s) 6, 161, 749
PspPI GGNCC 1 cut(s) 159
PspPPI RGGWCCY 1 cut(s) 159
PsuI RGATCY 2 cut(s) 186, 380
PvuII CAGCTG 2 cut(s) 199, 512
RruI TCGCGA 1 cut(s) 775
RsaI GTAC 2 cut(s) 91, 209
RsaNI GTAC 2 cut(s) 90, 208
RseI CAYNNNNRTG 2 cut(s) 476, 681
SacI GAGCTC 1 cut(s) 708
SapI GCTCTTC 1 cut(s) 77
SaqAI TTAA 2 cut(s) 372, 435
SatI GCNGC 2 cut(s) 51, 751
Sau3AI GATC 8 cut(s) 112, 186, 216, 314, 361, 380, 583, 673
Sau96I GGNCC 1 cut(s) 159
ScaI AGTACT 1 cut(s) 91
ScrFI CCNGG 2 cut(s) 55, 590
SduI GDGCHC 3 cut(s) 262, 306, 708
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 1 cut(s) 159
SmiMI CAYNNNNRTG 2 cut(s) 476, 681
SmlI CTYRAG 2 cut(s) 128, 701
SmoI CTYRAG 2 cut(s) 128, 701
SpeI ACTAGT 1 cut(s) 524
Sse9I AATT 1 cut(s) 346
SsiI CCGC 3 cut(s) 414, 459, 751
SspMI CTAG 4 cut(s) 93, 417, 492, 525
SstI GAGCTC 1 cut(s) 708
StyD4I CCNGG 2 cut(s) 53, 588
TaaI ACNGT 2 cut(s) 612, 680
TaqI TCGA 1 cut(s) 219
TasI AATT 1 cut(s) 346
TatI WGTACW 1 cut(s) 89
TauI GCSGC 1 cut(s) 753
TfiI GAWTC 3 cut(s) 100, 123, 467
Tru1I TTAA 2 cut(s) 372, 435
Tru9I TTAA 2 cut(s) 372, 435
TscAI CASTG 1 cut(s) 615
TseI GCWGC 1 cut(s) 50
TspDTI ATGAA 6 cut(s) 287, 480, 488, 553, 560, 662
TspRI CASTG 1 cut(s) 615
VpaK11BI GGWCC 1 cut(s) 159
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 526
XspI CTAG 4 cut(s) 93, 417, 492, 525
ZrmI AGTACT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.