RchiOBHm_Chr7g0240241

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
66187910 .. 66188506
597 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21533

Sequence Viewer

Length: 597 bp
ATGCAAAGATCAGGGCTTGTTGGTAATGGTAATGGTACCAATTGGAAACCTGAGGATCAGTATATTAACTTCGGATCTTCTGCATCTGCTTCTGCTTCTTCAACTAGTGTGATTGCTTTTAACGGGCAGATGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGAAGAGTTTTAGGGATTGTTCAATCTCAGCTGGAGGGGGAACTAGTTCTACTGGTGTTGGTGGATCCATTAGTCACAATTTTGGGTCATGGGTCGGCTGCAGTGTTGACCCATATTCCTCCTCATCCTACACTACTAGTACTAGTACTACTTTCTTTGACATGAATGAAGAACAAACTTTCATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACCCTTCTACTGTTCCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGAGGGAGGTGGCGGCTACAACGGTAGCTCTCGCACTTCCCTTGAGCTCAGCCTCAACTCTTACGGCTTGACCCTATTTTCTCGCGAAGGTATTTTCTCTGCTAGAGAAGAGACAAAGCTCAAAAAAATTTCCGGAGCCGCTGACTCAGCTTAA

Protein Analysis

198

Amino Acids

20.97

Weight (kDa)

4.72

Isoelectric Point (pI)

27.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000152)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17950
fragaria_vesca FvH4_1g11910 FvH4_3g04400
malus_domestica MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica Prupe.7G167700_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 35
AccII CGCG 1 cut(s) 528
AccIII TCCGGA 1 cut(s) 575
AciI CCGC 2 cut(s) 456, 582
AclWI GGATC 5 cut(s) 63, 82, 160, 225, 238
AcsI RAATTY 1 cut(s) 570
AfaI GTAC 3 cut(s) 37, 307, 313
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 3 cut(s) 102, 189, 383
AhlI ACTAGT 4 cut(s) 104, 209, 302, 308
AjnI CCWGG 1 cut(s) 372
AluBI AGCT 5 cut(s) 197, 471, 490, 562, 593
AluI AGCT 5 cut(s) 197, 471, 490, 562, 593
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 1 cut(s) 548
AlwI GGATC 5 cut(s) 63, 82, 160, 225, 238
Aor13HI TCCGGA 1 cut(s) 575
ApeKI GCWGC 1 cut(s) 264
ApoI RAATTY 1 cut(s) 570
Asp700I GAANNNNTTC 2 cut(s) 211, 387
Asp718I GGTACC 1 cut(s) 35
AsuHPI GGTGA 2 cut(s) 362, 422
AxyI CCTNAGG 1 cut(s) 51
BamHI GGATCC 1 cut(s) 230
BanI GGYRCC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 492
BarI GAAGNNNNNNTAC 2 cut(s) 53, 85
BbsI GAAGAC 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 492
BbvI GCAGC 1 cut(s) 251
BccI CCATC 1 cut(s) 124
BceAI ACGGC 1 cut(s) 523
BciT130I CCWGG 1 cut(s) 374
BcoDI GTCTC 1 cut(s) 548
BcuI ACTAGT 4 cut(s) 104, 209, 302, 308
BfaI CTAG 5 cut(s) 105, 210, 303, 309, 546
BfmI CTRYAG 1 cut(s) 265
BisI GCNGC 3 cut(s) 265, 457, 582
BlpI GCTNAGC 1 cut(s) 491
BlsI GCNGC 3 cut(s) 266, 458, 583
BmcAI AGTACT 2 cut(s) 307, 313
Bme1390I CCNGG 1 cut(s) 374
BmiI GGNNCC 3 cut(s) 37, 232, 580
BmrFI CCNGG 1 cut(s) 374
BmsI GCATC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 440
BpmI CTGGAG 1 cut(s) 219
Bpu1102I GCTNAGC 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 444
BsaWI WCCGGW 1 cut(s) 575
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse1I ACTGG 1 cut(s) 223
Bse21I CCTNAGG 1 cut(s) 51
BseAI TCCGGA 1 cut(s) 575
BseBI CCWGG 1 cut(s) 374
BseDI CCNNGG 1 cut(s) 444
BseGI GGATG 1 cut(s) 290
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 3 cut(s) 42, 207, 505
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 2 cut(s) 277, 375
BseXI GCAGC 1 cut(s) 251
Bsh1236I CGCG 1 cut(s) 528
BshNI GGYRCC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 492
BsiSI CCGG 1 cut(s) 576
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 492
Bsp13I TCCGGA 1 cut(s) 575
Bsp143I GATC 6 cut(s) 8, 55, 74, 152, 230, 367
Bsp1720I GCTNAGC 1 cut(s) 491
Bsp68I TCGCGA 1 cut(s) 528
BspACI CCGC 2 cut(s) 456, 582
BspCNI CTCAG 3 cut(s) 43, 206, 504
BspEI TCCGGA 1 cut(s) 575
BspFNI CGCG 1 cut(s) 528
BspLI GGNNCC 3 cut(s) 37, 232, 580
BspMAI CTGCAG 1 cut(s) 269
BspPI GGATC 5 cut(s) 63, 82, 160, 225, 238
BspT107I GGYRCC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 444
BssMI GATC 6 cut(s) 8, 55, 74, 152, 230, 367
Bst2UI CCWGG 1 cut(s) 374
Bst4CI ACNGT 2 cut(s) 396, 467
Bst6I CTCTTC 2 cut(s) 164, 546
BstDEI CTNAG 4 cut(s) 51, 193, 491, 589
BstF5I GGATG 1 cut(s) 290
BstFNI CGCG 1 cut(s) 528
BstKTI GATC 6 cut(s) 11, 58, 77, 155, 233, 370
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 6 cut(s) 8, 55, 74, 152, 230, 367
BstMWI GCNNNNNNNGC 1 cut(s) 590
BstNI CCWGG 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 372
BstSFI CTRYAG 1 cut(s) 265
BstUI CGCG 1 cut(s) 528
BstV1I GCAGC 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 3 cut(s) 74, 152, 230
BstYI RGATCY 3 cut(s) 74, 152, 230
Bsu36I CCTNAGG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 290
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 274
BtuMI TCGCGA 1 cut(s) 528
Csp6I GTAC 3 cut(s) 36, 306, 312
CviAII CATG 7 cut(s) 163, 255, 328, 349, 403, 407, 430
CviQI GTAC 3 cut(s) 36, 306, 312
DdeI CTNAG 4 cut(s) 51, 193, 491, 589
DpnI GATC 6 cut(s) 10, 57, 76, 154, 232, 369
DpnII GATC 6 cut(s) 8, 55, 74, 152, 230, 367
Eam1104I CTCTTC 2 cut(s) 164, 546
EarI CTCTTC 2 cut(s) 164, 546
Ecl136II GAGCTC 1 cut(s) 490
Eco24I GRGCYC 1 cut(s) 492
Eco53kI GAGCTC 1 cut(s) 490
Eco81I CCTNAGG 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 372
EcoT22I ATGCAT 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 492
FaeI CATG 7 cut(s) 166, 258, 331, 352, 406, 410, 433
FatI CATG 7 cut(s) 162, 254, 327, 348, 402, 406, 429
Fnu4HI GCNGC 3 cut(s) 265, 457, 582
FokI GGATG 1 cut(s) 277
FriOI GRGCYC 1 cut(s) 492
Fsp4HI GCNGC 3 cut(s) 265, 457, 582
FspBI CTAG 5 cut(s) 105, 210, 303, 309, 546
GluI GCNGC 3 cut(s) 265, 457, 582
GsuI CTGGAG 1 cut(s) 219
HapII CCGG 1 cut(s) 576
Hin1II CATG 7 cut(s) 166, 258, 331, 352, 406, 410, 433
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 1 cut(s) 587
HpaII CCGG 1 cut(s) 576
HphI GGTGA 2 cut(s) 362, 422
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 2 cut(s) 74, 445
Hpy188III TCNNGA 2 cut(s) 527, 576
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 2 cut(s) 398, 524
HpyCH4III ACNGT 2 cut(s) 396, 467
HpyCH4V TGCA 4 cut(s) 4, 83, 267, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 590
HpyF3I CTNAG 4 cut(s) 51, 193, 491, 589
Hsp92II CATG 7 cut(s) 166, 258, 331, 352, 406, 410, 433
Kpn2I TCCGGA 1 cut(s) 575
KpnI GGTACC 1 cut(s) 39
Kzo9I GATC 6 cut(s) 8, 55, 74, 152, 230, 367
LmnI GCTCC 1 cut(s) 578
LpnPI CCDG 6 cut(s) 63, 183, 204, 359, 386, 589
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 1 cut(s) 92
MaeI CTAG 5 cut(s) 105, 210, 303, 309, 546
MaeIII GTNAC 1 cut(s) 239
MalI GATC 6 cut(s) 10, 57, 76, 154, 232, 369
MboI GATC 6 cut(s) 8, 55, 74, 152, 230, 367
MboII GAAGA 7 cut(s) 69, 90, 181, 347, 377, 445, 563
MfeI CAATTG 1 cut(s) 40
MflI RGATCY 3 cut(s) 74, 152, 230
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 3 cut(s) 40, 244, 570
MlyI GAGTC 1 cut(s) 581
MnlI CCTC 9 cut(s) 46, 194, 295, 298, 353, 406, 439, 443, 506
Mph1103I ATGCAT 1 cut(s) 408
MroI TCCGGA 1 cut(s) 575
MroXI GAANNNNTTC 2 cut(s) 211, 387
MseI TTAA 3 cut(s) 66, 120, 595
MspA1I CMGCKG 2 cut(s) 197, 584
MspI CCGG 1 cut(s) 576
MspR9I CCNGG 1 cut(s) 374
MunI CAATTG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 374
MvnI CGCG 1 cut(s) 528
MwoI GCNNNNNNNGC 1 cut(s) 590
NdeII GATC 6 cut(s) 8, 55, 74, 152, 230, 367
NlaIII CATG 7 cut(s) 166, 258, 331, 352, 406, 410, 433
NlaIV GGNNCC 3 cut(s) 37, 232, 580
NmuCI GTSAC 1 cut(s) 239
NruI TCGCGA 1 cut(s) 528
NsiI ATGCAT 1 cut(s) 408
PdmI GAANNNNTTC 2 cut(s) 211, 387
PkrI GCNGC 3 cut(s) 266, 458, 583
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
Psp124BI GAGCTC 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 372
PspGI CCWGG 1 cut(s) 372
PspN4I GGNNCC 3 cut(s) 37, 232, 580
PsrI GAACNNNNNNTAC 2 cut(s) 199, 231
PstI CTGCAG 1 cut(s) 269
PsuI RGATCY 3 cut(s) 74, 152, 230
PvuII CAGCTG 1 cut(s) 197
RruI TCGCGA 1 cut(s) 528
RsaI GTAC 3 cut(s) 37, 307, 313
RsaNI GTAC 3 cut(s) 36, 306, 312
SacI GAGCTC 1 cut(s) 492
SaqAI TTAA 3 cut(s) 66, 120, 595
SatI GCNGC 3 cut(s) 265, 457, 582
Sau3AI GATC 6 cut(s) 8, 55, 74, 152, 230, 367
ScaI AGTACT 2 cut(s) 307, 313
SchI GAGTC 1 cut(s) 581
ScrFI CCNGG 1 cut(s) 374
SduI GDGCHC 1 cut(s) 492
SetI ASST 8 cut(s) 52, 199, 454, 473, 492, 535, 564, 595
SfaNI GCATC 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
SpeI ACTAGT 4 cut(s) 104, 209, 302, 308
Sse9I AATT 3 cut(s) 40, 244, 570
SsiI CCGC 2 cut(s) 456, 582
SspMI CTAG 5 cut(s) 105, 210, 303, 309, 546
SstI GAGCTC 1 cut(s) 492
StyD4I CCNGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 396, 467
TasI AATT 3 cut(s) 40, 244, 570
TatI WGTACW 2 cut(s) 305, 311
TauI GCSGC 2 cut(s) 459, 584
Tru1I TTAA 3 cut(s) 66, 120, 595
Tru9I TTAA 3 cut(s) 66, 120, 595
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 1 cut(s) 264
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 5 cut(s) 173, 337, 344, 348, 446
TspRI CASTG 1 cut(s) 274
XapI RAATTY 1 cut(s) 570
XmnI GAANNNNTTC 2 cut(s) 211, 387
XspI CTAG 5 cut(s) 105, 210, 303, 309, 546
ZrmI AGTACT 2 cut(s) 307, 313
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.