Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 35 |
| AccB1I | GGYRCC | 1 cut(s) | 35 |
| AccII | CGCG | 1 cut(s) | 528 |
| AccIII | TCCGGA | 1 cut(s) | 575 |
| AciI | CCGC | 2 cut(s) | 456, 582 |
| AclWI | GGATC | 5 cut(s) | 63, 82, 160, 225, 238 |
| AcsI | RAATTY | 1 cut(s) | 570 |
| AfaI | GTAC | 3 cut(s) | 37, 307, 313 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 407 |
| AgsI | TTSAA | 3 cut(s) | 102, 189, 383 |
| AhlI | ACTAGT | 4 cut(s) | 104, 209, 302, 308 |
| AjnI | CCWGG | 1 cut(s) | 372 |
| AluBI | AGCT | 5 cut(s) | 197, 471, 490, 562, 593 |
| AluI | AGCT | 5 cut(s) | 197, 471, 490, 562, 593 |
| Alw21I | GWGCWC | 1 cut(s) | 492 |
| Alw26I | GTCTC | 1 cut(s) | 548 |
| AlwI | GGATC | 5 cut(s) | 63, 82, 160, 225, 238 |
| Aor13HI | TCCGGA | 1 cut(s) | 575 |
| ApeKI | GCWGC | 1 cut(s) | 264 |
| ApoI | RAATTY | 1 cut(s) | 570 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 211, 387 |
| Asp718I | GGTACC | 1 cut(s) | 35 |
| AsuHPI | GGTGA | 2 cut(s) | 362, 422 |
| AxyI | CCTNAGG | 1 cut(s) | 51 |
| BamHI | GGATCC | 1 cut(s) | 230 |
| BanI | GGYRCC | 1 cut(s) | 35 |
| BanII | GRGCYC | 1 cut(s) | 492 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 53, 85 |
| BbsI | GAAGAC | 1 cut(s) | 440 |
| Bbv12I | GWGCWC | 1 cut(s) | 492 |
| BbvI | GCAGC | 1 cut(s) | 251 |
| BccI | CCATC | 1 cut(s) | 124 |
| BceAI | ACGGC | 1 cut(s) | 523 |
| BciT130I | CCWGG | 1 cut(s) | 374 |
| BcoDI | GTCTC | 1 cut(s) | 548 |
| BcuI | ACTAGT | 4 cut(s) | 104, 209, 302, 308 |
| BfaI | CTAG | 5 cut(s) | 105, 210, 303, 309, 546 |
| BfmI | CTRYAG | 1 cut(s) | 265 |
| BisI | GCNGC | 3 cut(s) | 265, 457, 582 |
| BlpI | GCTNAGC | 1 cut(s) | 491 |
| BlsI | GCNGC | 3 cut(s) | 266, 458, 583 |
| BmcAI | AGTACT | 2 cut(s) | 307, 313 |
| Bme1390I | CCNGG | 1 cut(s) | 374 |
| BmiI | GGNNCC | 3 cut(s) | 37, 232, 580 |
| BmrFI | CCNGG | 1 cut(s) | 374 |
| BmsI | GCATC | 1 cut(s) | 92 |
| BpiI | GAAGAC | 1 cut(s) | 440 |
| BpmI | CTGGAG | 1 cut(s) | 219 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 491 |
| BpuEI | CTTGAG | 1 cut(s) | 506 |
| BsaJI | CCNNGG | 1 cut(s) | 444 |
| BsaWI | WCCGGW | 1 cut(s) | 575 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 407 |
| Bse1I | ACTGG | 1 cut(s) | 223 |
| Bse21I | CCTNAGG | 1 cut(s) | 51 |
| BseAI | TCCGGA | 1 cut(s) | 575 |
| BseBI | CCWGG | 1 cut(s) | 374 |
| BseDI | CCNNGG | 1 cut(s) | 444 |
| BseGI | GGATG | 1 cut(s) | 290 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 407 |
| BseMII | CTCAG | 3 cut(s) | 42, 207, 505 |
| BseNI | ACTGG | 1 cut(s) | 223 |
| BseRI | GAGGAG | 2 cut(s) | 277, 375 |
| BseXI | GCAGC | 1 cut(s) | 251 |
| Bsh1236I | CGCG | 1 cut(s) | 528 |
| BshNI | GGYRCC | 1 cut(s) | 35 |
| BsiHKAI | GWGCWC | 1 cut(s) | 492 |
| BsiSI | CCGG | 1 cut(s) | 576 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 407 |
| BsmAI | GTCTC | 1 cut(s) | 548 |
| Bsp1286I | GDGCHC | 1 cut(s) | 492 |
| Bsp13I | TCCGGA | 1 cut(s) | 575 |
| Bsp143I | GATC | 6 cut(s) | 8, 55, 74, 152, 230, 367 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 491 |
| Bsp68I | TCGCGA | 1 cut(s) | 528 |
| BspACI | CCGC | 2 cut(s) | 456, 582 |
| BspCNI | CTCAG | 3 cut(s) | 43, 206, 504 |
| BspEI | TCCGGA | 1 cut(s) | 575 |
| BspFNI | CGCG | 1 cut(s) | 528 |
| BspLI | GGNNCC | 3 cut(s) | 37, 232, 580 |
| BspMAI | CTGCAG | 1 cut(s) | 269 |
| BspPI | GGATC | 5 cut(s) | 63, 82, 160, 225, 238 |
| BspT107I | GGYRCC | 1 cut(s) | 35 |
| BsrI | ACTGG | 1 cut(s) | 223 |
| BssECI | CCNNGG | 1 cut(s) | 444 |
| BssMI | GATC | 6 cut(s) | 8, 55, 74, 152, 230, 367 |
| Bst2UI | CCWGG | 1 cut(s) | 374 |
| Bst4CI | ACNGT | 2 cut(s) | 396, 467 |
| Bst6I | CTCTTC | 2 cut(s) | 164, 546 |
| BstDEI | CTNAG | 4 cut(s) | 51, 193, 491, 589 |
| BstF5I | GGATG | 1 cut(s) | 290 |
| BstFNI | CGCG | 1 cut(s) | 528 |
| BstKTI | GATC | 6 cut(s) | 11, 58, 77, 155, 233, 370 |
| BstMAI | GTCTC | 1 cut(s) | 548 |
| BstMBI | GATC | 6 cut(s) | 8, 55, 74, 152, 230, 367 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 590 |
| BstNI | CCWGG | 1 cut(s) | 374 |
| BstSCI | CCNGG | 1 cut(s) | 372 |
| BstSFI | CTRYAG | 1 cut(s) | 265 |
| BstUI | CGCG | 1 cut(s) | 528 |
| BstV1I | GCAGC | 1 cut(s) | 251 |
| BstV2I | GAAGAC | 1 cut(s) | 440 |
| BstX2I | RGATCY | 3 cut(s) | 74, 152, 230 |
| BstYI | RGATCY | 3 cut(s) | 74, 152, 230 |
| Bsu36I | CCTNAGG | 1 cut(s) | 51 |
| BtsCI | GGATG | 1 cut(s) | 290 |
| BtsI | GCAGTG | 1 cut(s) | 274 |
| BtsIMutI | CAGTG | 1 cut(s) | 274 |
| BtuMI | TCGCGA | 1 cut(s) | 528 |
| Csp6I | GTAC | 3 cut(s) | 36, 306, 312 |
| CviAII | CATG | 7 cut(s) | 163, 255, 328, 349, 403, 407, 430 |
| CviQI | GTAC | 3 cut(s) | 36, 306, 312 |
| DdeI | CTNAG | 4 cut(s) | 51, 193, 491, 589 |
| DpnI | GATC | 6 cut(s) | 10, 57, 76, 154, 232, 369 |
| DpnII | GATC | 6 cut(s) | 8, 55, 74, 152, 230, 367 |
| Eam1104I | CTCTTC | 2 cut(s) | 164, 546 |
| EarI | CTCTTC | 2 cut(s) | 164, 546 |
| Ecl136II | GAGCTC | 1 cut(s) | 490 |
| Eco24I | GRGCYC | 1 cut(s) | 492 |
| Eco53kI | GAGCTC | 1 cut(s) | 490 |
| Eco81I | CCTNAGG | 1 cut(s) | 51 |
| EcoICRI | GAGCTC | 1 cut(s) | 490 |
| EcoRII | CCWGG | 1 cut(s) | 372 |
| EcoT22I | ATGCAT | 1 cut(s) | 408 |
| EcoT38I | GRGCYC | 1 cut(s) | 492 |
| FaeI | CATG | 7 cut(s) | 166, 258, 331, 352, 406, 410, 433 |
| FatI | CATG | 7 cut(s) | 162, 254, 327, 348, 402, 406, 429 |
| Fnu4HI | GCNGC | 3 cut(s) | 265, 457, 582 |
| FokI | GGATG | 1 cut(s) | 277 |
| FriOI | GRGCYC | 1 cut(s) | 492 |
| Fsp4HI | GCNGC | 3 cut(s) | 265, 457, 582 |
| FspBI | CTAG | 5 cut(s) | 105, 210, 303, 309, 546 |
| GluI | GCNGC | 3 cut(s) | 265, 457, 582 |
| GsuI | CTGGAG | 1 cut(s) | 219 |
| HapII | CCGG | 1 cut(s) | 576 |
| Hin1II | CATG | 7 cut(s) | 166, 258, 331, 352, 406, 410, 433 |
| HincII | GTYRAC | 1 cut(s) | 274 |
| HindII | GTYRAC | 1 cut(s) | 274 |
| HinfI | GANTC | 1 cut(s) | 587 |
| HpaII | CCGG | 1 cut(s) | 576 |
| HphI | GGTGA | 2 cut(s) | 362, 422 |
| Hpy166II | GTNNAC | 1 cut(s) | 274 |
| Hpy188I | TCNGA | 2 cut(s) | 74, 445 |
| Hpy188III | TCNNGA | 2 cut(s) | 527, 576 |
| Hpy8I | GTNNAC | 1 cut(s) | 274 |
| HpyAV | CCTTC | 2 cut(s) | 398, 524 |
| HpyCH4III | ACNGT | 2 cut(s) | 396, 467 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 83, 267, 406 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 590 |
| HpyF3I | CTNAG | 4 cut(s) | 51, 193, 491, 589 |
| Hsp92II | CATG | 7 cut(s) | 166, 258, 331, 352, 406, 410, 433 |
| Kpn2I | TCCGGA | 1 cut(s) | 575 |
| KpnI | GGTACC | 1 cut(s) | 39 |
| Kzo9I | GATC | 6 cut(s) | 8, 55, 74, 152, 230, 367 |
| LmnI | GCTCC | 1 cut(s) | 578 |
| LpnPI | CCDG | 6 cut(s) | 63, 183, 204, 359, 386, 589 |
| Lsp1109I | GCAGC | 1 cut(s) | 251 |
| LweI | GCATC | 1 cut(s) | 92 |
| MaeI | CTAG | 5 cut(s) | 105, 210, 303, 309, 546 |
| MaeIII | GTNAC | 1 cut(s) | 239 |
| MalI | GATC | 6 cut(s) | 10, 57, 76, 154, 232, 369 |
| MboI | GATC | 6 cut(s) | 8, 55, 74, 152, 230, 367 |
| MboII | GAAGA | 7 cut(s) | 69, 90, 181, 347, 377, 445, 563 |
| MfeI | CAATTG | 1 cut(s) | 40 |
| MflI | RGATCY | 3 cut(s) | 74, 152, 230 |
| MhlI | GDGCHC | 1 cut(s) | 492 |
| MluCI | AATT | 3 cut(s) | 40, 244, 570 |
| MlyI | GAGTC | 1 cut(s) | 581 |
| MnlI | CCTC | 9 cut(s) | 46, 194, 295, 298, 353, 406, 439, 443, 506 |
| Mph1103I | ATGCAT | 1 cut(s) | 408 |
| MroI | TCCGGA | 1 cut(s) | 575 |
| MroXI | GAANNNNTTC | 2 cut(s) | 211, 387 |
| MseI | TTAA | 3 cut(s) | 66, 120, 595 |
| MspA1I | CMGCKG | 2 cut(s) | 197, 584 |
| MspI | CCGG | 1 cut(s) | 576 |
| MspR9I | CCNGG | 1 cut(s) | 374 |
| MunI | CAATTG | 1 cut(s) | 40 |
| MvaI | CCWGG | 1 cut(s) | 374 |
| MvnI | CGCG | 1 cut(s) | 528 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 590 |
| NdeII | GATC | 6 cut(s) | 8, 55, 74, 152, 230, 367 |
| NlaIII | CATG | 7 cut(s) | 166, 258, 331, 352, 406, 410, 433 |
| NlaIV | GGNNCC | 3 cut(s) | 37, 232, 580 |
| NmuCI | GTSAC | 1 cut(s) | 239 |
| NruI | TCGCGA | 1 cut(s) | 528 |
| NsiI | ATGCAT | 1 cut(s) | 408 |
| PdmI | GAANNNNTTC | 2 cut(s) | 211, 387 |
| PkrI | GCNGC | 3 cut(s) | 266, 458, 583 |
| PleI | GAGTC | 1 cut(s) | 581 |
| PpsI | GAGTC | 1 cut(s) | 581 |
| Psp124BI | GAGCTC | 1 cut(s) | 492 |
| Psp6I | CCWGG | 1 cut(s) | 372 |
| PspGI | CCWGG | 1 cut(s) | 372 |
| PspN4I | GGNNCC | 3 cut(s) | 37, 232, 580 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 199, 231 |
| PstI | CTGCAG | 1 cut(s) | 269 |
| PsuI | RGATCY | 3 cut(s) | 74, 152, 230 |
| PvuII | CAGCTG | 1 cut(s) | 197 |
| RruI | TCGCGA | 1 cut(s) | 528 |
| RsaI | GTAC | 3 cut(s) | 37, 307, 313 |
| RsaNI | GTAC | 3 cut(s) | 36, 306, 312 |
| SacI | GAGCTC | 1 cut(s) | 492 |
| SaqAI | TTAA | 3 cut(s) | 66, 120, 595 |
| SatI | GCNGC | 3 cut(s) | 265, 457, 582 |
| Sau3AI | GATC | 6 cut(s) | 8, 55, 74, 152, 230, 367 |
| ScaI | AGTACT | 2 cut(s) | 307, 313 |
| SchI | GAGTC | 1 cut(s) | 581 |
| ScrFI | CCNGG | 1 cut(s) | 374 |
| SduI | GDGCHC | 1 cut(s) | 492 |
| SetI | ASST | 8 cut(s) | 52, 199, 454, 473, 492, 535, 564, 595 |
| SfaNI | GCATC | 1 cut(s) | 92 |
| SfcI | CTRYAG | 1 cut(s) | 265 |
| SmlI | CTYRAG | 1 cut(s) | 485 |
| SmoI | CTYRAG | 1 cut(s) | 485 |
| SpeI | ACTAGT | 4 cut(s) | 104, 209, 302, 308 |
| Sse9I | AATT | 3 cut(s) | 40, 244, 570 |
| SsiI | CCGC | 2 cut(s) | 456, 582 |
| SspMI | CTAG | 5 cut(s) | 105, 210, 303, 309, 546 |
| SstI | GAGCTC | 1 cut(s) | 492 |
| StyD4I | CCNGG | 1 cut(s) | 372 |
| TaaI | ACNGT | 2 cut(s) | 396, 467 |
| TasI | AATT | 3 cut(s) | 40, 244, 570 |
| TatI | WGTACW | 2 cut(s) | 305, 311 |
| TauI | GCSGC | 2 cut(s) | 459, 584 |
| Tru1I | TTAA | 3 cut(s) | 66, 120, 595 |
| Tru9I | TTAA | 3 cut(s) | 66, 120, 595 |
| TscAI | CASTG | 1 cut(s) | 274 |
| TseFI | GTSAC | 1 cut(s) | 239 |
| TseI | GCWGC | 1 cut(s) | 264 |
| Tsp45I | GTSAC | 1 cut(s) | 239 |
| TspDTI | ATGAA | 5 cut(s) | 173, 337, 344, 348, 446 |
| TspRI | CASTG | 1 cut(s) | 274 |
| XapI | RAATTY | 1 cut(s) | 570 |
| XmnI | GAANNNNTTC | 2 cut(s) | 211, 387 |
| XspI | CTAG | 5 cut(s) | 105, 210, 303, 309, 546 |
| ZrmI | AGTACT | 2 cut(s) | 307, 313 |
| Zsp2I | ATGCAT | 1 cut(s) | 408 |