Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000152

Physical Location & Seq

Genomic Coordinates Forward (+)

42610394 .. 42611464

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0253200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGCCTGAGAAAAATGGCAAGTATACAGTGAAGTCGGCTTACTGGATTGCTAGAGAGACAGTGATGGGAAATCTTCTAGCTTCTACATCCTCGAGTGATCCTTATCGAGGTTTATGGAAAAAGATTTGGAACACAAAGGTCCCAGGTAAAGTCAAAATTTGTCTATGGAGGGCTGCTAACAATATTTTGCCTAGTCGAGAAAGTCTAAGTCATAAAGGATATTCAGGTCCTTTAAACTGTCTATTATGTAATGATGCTTGGGAAACAACAAGTCATGTGTTGCATCATTGCCCTGTTGCCAAAGAAGCCATAGTAGTTGCAAACATCCCGATCAGTGAATGCCTACCTTGCAGCTTCAAAGAATGGTTAATGCATCAGGGACATCACCTCAATCAGGACCACTGGGAAAGATTAATCATGATTCTATGGGCCTTGTGGAAGAACAGAAATAGTAAGTTTTGGCAAGACTTGAATCAGAGTGCACATGCAATTGTTGCTTCCACTATGACTTGGTACCAGCAATTTTTGCATGCACAGCAAATGACATCGCAAGGACATTCAGCCAAGCCAAGTAAATATTGGACTTCACCAGTAACACAACAGCTCAAAATCAACGTTGATGGAGCTTTTATGCCTTCCAAAGATAGTGGAGGCATTGGTGGAGTGATCAGAAGAAAAGATGGTTCTTTTGTAGCTGCTTTTTCCAAAACAGTTCAACATGTTTCCTCTCCAAAACATGTTGAGCTGCTAGCTATCAGAGAAGGAATTGATTTTCTTCGTCAAATTGGTGTGCAGGAAGTTTGTCTTGAAAGTGACTGCCAGATTGCTATACAACAGATTGGAGATGCAGATTTTGAGCTCAATGAACATGCCAATCTGTTACTAGATATACATCAGAGTAAGGAATTTGTACAGGAACTGGCTTTTGTTTTTGCTCCTAGAACAGCCAATATGGCAGCGCATAGGCTTGCTGCTTTAGCTTACGAATCCAATACCTCTCAAGTTTGGATCGATCAAGCTCCAGCTCATCTTCTGGATGCTTTGGCTTTTGATTGTACCCATCTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

356

Amino Acids

40.1

Weight (kDa)

7.68

Isoelectric Point (pI)

39.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	8 - 102	3.1e-16	zinc-binding in reverse transcriptase
RVT_3	PF13456	205 - 326	2.6e-20	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000152)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17950
fragaria_vesca	FvH4_1g11910 FvH4_3g04400
malus_domestica	MD02G1133000.v1.1 MD15G1245600.v1.1
prunus_persica	Prupe.7G167700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0314921 RchiOBHm_Chr1g0319941 RchiOBHm_Chr1g0321251 RchiOBHm_Chr1g0323021 RchiOBHm_Chr1g0324491 RchiOBHm_Chr1g0325171 RchiOBHm_Chr1g0360601 RchiOBHm_Chr1g0365451 RchiOBHm_Chr1g0381201 RchiOBHm_Chr2g0085401 RchiOBHm_Chr2g0099501 RchiOBHm_Chr2g0106981 RchiOBHm_Chr2g0130271 RchiOBHm_Chr2g0155121 RchiOBHm_Chr3g0455971 RchiOBHm_Chr3g0459501 RchiOBHm_Chr3g0478111 RchiOBHm_Chr3g0480661 RchiOBHm_Chr4g0388561 RchiOBHm_Chr4g0394421 RchiOBHm_Chr4g0424371 RchiOBHm_Chr5g0028631 RchiOBHm_Chr5g0069751 RchiOBHm_Chr5g0076691 RchiOBHm_Chr5g0076711 RchiOBHm_Chr5g0076721 RchiOBHm_Chr5g0079671 RchiOBHm_Chr5g0079731 RchiOBHm_Chr5g0079911 RchiOBHm_Chr5g0081741 RchiOBHm_Chr6g0255231 RchiOBHm_Chr6g0283251 RchiOBHm_Chr6g0300091 RchiOBHm_Chr7g0190751 RchiOBHm_Chr7g0240241
rosa_multiflora	Rmu_co8441375.1_g000001 Rmu_sc0000110.1_g000027 Rmu_sc0000187.1_g000008 Rmu_sc0000240.1_g000065 Rmu_sc0000251.1_g000004 Rmu_sc0000272.1_g000025 Rmu_sc0000276.1_g000074 Rmu_sc0000284.1_g000010 Rmu_sc0000285.1_g000021 Rmu_sc0000360.1_g000034 Rmu_sc0000365.1_g000038 Rmu_sc0000368.1_g000013 Rmu_sc0000368.1_g000025 Rmu_sc0000770.1_g000044 Rmu_sc0000770.1_g000052 Rmu_sc0000795.1_g000098 Rmu_sc0000945.1_g000037 Rmu_sc0000949.1_g000023 Rmu_sc0000982.1_g000002 Rmu_sc0001424.1_g000004 Rmu_sc0001775.1_g000004 Rmu_sc0001952.1_g000010 Rmu_sc0002080.1_g000046 Rmu_sc0002141.1_g000016 Rmu_sc0002183.1_g000004 Rmu_sc0002187.1_g000040 Rmu_sc0002263.1_g000057 Rmu_sc0002351.1_g000061 Rmu_sc0002542.1_g000017 Rmu_sc0002751.1_g000003 Rmu_sc0002792.1_g000029 Rmu_sc0002798.1_g000020 Rmu_sc0002985.1_g000010 Rmu_sc0003124.1_g000019 Rmu_sc0003207.1_g000019 Rmu_sc0003237.1_g000003 Rmu_sc0003363.1_g000050 Rmu_sc0003443.1_g000025 Rmu_sc0003465.1_g000032 Rmu_sc0003500.1_g000012 Rmu_sc0003809.1_g000026 Rmu_sc0003859.1_g000032 Rmu_sc0004085.1_g000003 Rmu_sc0004085.1_g000008 Rmu_sc0004571.1_g000019 Rmu_sc0004753.1_g000006 Rmu_sc0004865.1_g000017 Rmu_sc0004881.1_g000007 Rmu_sc0005697.1_g000023 Rmu_sc0005812.1_g000020 Rmu_sc0007076.1_g000001 Rmu_sc0007801.1_g000003 Rmu_sc0008355.1_g000007 Rmu_sc0009380.1_g000006 Rmu_sc0010191.1_g000004 Rmu_sc0010252.1_g000006 Rmu_sc0011026.1_g000001 Rmu_sc0011824.1_g000003 Rmu_sc0012533.1_g000006 Rmu_sc0012640.1_g000006 Rmu_sc0014032.1_g000001 Rmu_sc0014545.1_g000001 Rmu_sc0014840.1_g000008 Rmu_sc0015060.1_g000013 Rmu_sc0018122.1_g000003 Rmu_sc0026563.1_g000004 Rmu_ssc0000213.1_g000057 Rmu_ssc0000213.1_g000091 Rmu_ssc0000262.1_g000021 Rmu_ssc0000282.1_g000021 Rmu_ssc0000295.1_g000041 Rmu_ssc0000438.1_g000002 Rmu_ssc0000472.1_g000015
rosa_roxburghii	Rroxscaffold_1G00020080 Rroxscaffold_2G00084980 Rroxscaffold_2G00143020 Rroxscaffold_3G00261750 Rroxscaffold_3G00268610 Rroxscaffold_4G00312950 Rroxscaffold_7G00156650 Rroxscaffold_7G00215160
rosa_rugosa	Rorug01G0077100 Rorug01G0201100 Rorug01G0246900 Rorug01G0256600 Rorug02G0080200 Rorug02G0089300 Rorug02G0090700 Rorug02G0177200 Rorug02G0187000 Rorug02G0192600 Rorug02G0232700 Rorug02G0262100 Rorug02G0328300 Rorug02G0408300 Rorug02G0641200 Rorug03G0155000 Rorug03G0185500 Rorug03G0256500 Rorug03G0291000 Rorug03G0299400 Rorug03G0317000 Rorug03G0326700 Rorug03G0330800 Rorug03G0339700 Rorug03G0352900 Rorug04G0029800 Rorug04G0029900 Rorug04G0048100 Rorug04G0075800 Rorug04G0124400 Rorug04G0212100 Rorug04G0212400 Rorug04G0253200 Rorug05G0116700 Rorug05G0146500 Rorug05G0211900 Rorug05G0215700 Rorug05G0216100 Rorug05G0220500 Rorug05G0339400 Rorug05G0352000 Rorug05G0356500.1 Rorug05G0398900 Rorug05G0474700 Rorug05G0511400 Rorug05G0540200 Rorug05G0541000 Rorug05G0572900.1 Rorug05G0584000 Rorug06G0000900 Rorug06G0014600 Rorug06G0018800 Rorug06G0026100 Rorug06G0042900 Rorug06G0082600 Rorug06G0133900 Rorug06G0229100 Rorug07G0321400 Rorug07G0326400 Rorug07G0326600.1
rosa_wichuraiana	Rw0G017710 Rw1G012170 Rw1G039350 Rw2G010030 Rw3G024430 Rw5G045720 Rw7G025340 Rw7G040870

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	513
AccB1I	GGYRCC	1 cut(s)	513
AccI	GTMKAC	1 cut(s)	23
AclI	AACGTT	1 cut(s)	615
AclWI	GGATC	2 cut(s)	92, 1016
AcsI	RAATTY	2 cut(s)	156, 905
AfaI	GTAC	3 cut(s)	515, 912, 1057
AfiI	CCNNNNNNNGG	2 cut(s)	107, 394
AflIII	ACRYGT	2 cut(s)	718, 736
AgsI	TTSAA	4 cut(s)	358, 472, 716, 809
AjnI	CCWGG	1 cut(s)	142
Alw21I	GWGCWC	2 cut(s)	484, 861
Alw26I	GTCTC	1 cut(s)	50
Alw44I	GTGCAC	1 cut(s)	480
AlwI	GGATC	2 cut(s)	92, 1016
AlwNI	CAGNNNCTG	1 cut(s)	919
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	1 cut(s)	429
ApaLI	GTGCAC	1 cut(s)	480
ApeKI	GCWGC	6 cut(s)	173, 351, 695, 745, 956, 971
ApoI	RAATTY	2 cut(s)	156, 905
AseI	ATTAAT	1 cut(s)	413
Asp718I	GGTACC	1 cut(s)	513
AspLEI	GCGC	1 cut(s)	961
AspS9I	GGNCC	4 cut(s)	139, 227, 397, 429
AsuHPI	GGTGA	2 cut(s)	377, 579
AsuNHI	GCTAGC	1 cut(s)	748
AvaI	CYCGRG	1 cut(s)	91
AvaII	GGWCC	3 cut(s)	139, 227, 397
BaeGI	GKGCMC	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	513
BanII	GRGCYC	1 cut(s)	861
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
Bbv12I	GWGCWC	2 cut(s)	484, 861
BbvI	GCAGC	6 cut(s)	160, 363, 682, 732, 958, 968
BccI	CCATC	4 cut(s)	58, 614, 674, 1068
BciT130I	CCWGG	1 cut(s)	144
BclI	TGATCA	1 cut(s)	666
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	6 cut(s)	51, 77, 192, 749, 884, 939
BglI	GCCNNNNNGGC	1 cut(s)	953
BisI	GCNGC	6 cut(s)	174, 352, 696, 746, 957, 972
BlsI	GCNGC	6 cut(s)	175, 353, 697, 747, 958, 973
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	3 cut(s)	139, 227, 397
BmeT110I	CYCGRG	1 cut(s)	91
BmgT120I	GGNCC	4 cut(s)	139, 227, 397, 429
BmiI	GGNNCC	2 cut(s)	141, 515
BmrFI	CCNGG	1 cut(s)	144
BmrI	ACTGGG	1 cut(s)	412
BmsI	GCATC	5 cut(s)	244, 292, 382, 835, 1027
BmtI	GCTAGC	1 cut(s)	752
BmuI	ACTGGG	1 cut(s)	412
BpmI	CTGGAG	1 cut(s)	1005
BpuEI	CTTGAG	1 cut(s)	984
Bsa29I	ATCGAT	1 cut(s)	1011
BsaBI	GATNNNNATC	2 cut(s)	102, 891
BsaJI	CCNNGG	1 cut(s)	142
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 394
Bse1I	ACTGG	4 cut(s)	47, 407, 590, 924
Bse3DI	GCAATG	1 cut(s)	286
Bse8I	GATNNNNATC	2 cut(s)	102, 891
BseBI	CCWGG	1 cut(s)	144
BseCI	ATCGAT	1 cut(s)	1011
BseDI	CCNNGG	1 cut(s)	142
BseGI	GGATG	3 cut(s)	86, 324, 1042
BseJI	GATNNNNATC	2 cut(s)	102, 891
BseLI	CCNNNNNNNGG	2 cut(s)	107, 394
BseMI	GCAATG	1 cut(s)	286
BseNI	ACTGG	4 cut(s)	47, 407, 590, 924
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	6 cut(s)	160, 363, 682, 732, 958, 968
BsgI	GTGCAG	1 cut(s)	812
BshFI	GGCC	1 cut(s)	431
BshNI	GGYRCC	1 cut(s)	513
BshVI	ATCGAT	1 cut(s)	1011
BsiHKAI	GWGCWC	2 cut(s)	484, 861
BsiHKCI	CYCGRG	1 cut(s)	91
BslFI	GGGAC	2 cut(s)	125, 393
BslI	CCNNNNNNNGG	2 cut(s)	107, 394
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	2 cut(s)	125, 393
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	431
BsoBI	CYCGRG	1 cut(s)	91
Bsp1286I	GDGCHC	2 cut(s)	484, 861
Bsp1407I	TGTACA	1 cut(s)	910
Bsp143I	GATC	5 cut(s)	97, 330, 666, 1008, 1012
BspANI	GGCC	1 cut(s)	431
BspDI	ATCGAT	1 cut(s)	1011
BspHI	TCATGA	1 cut(s)	417
BspLI	GGNNCC	2 cut(s)	141, 515
BspOI	GCTAGC	1 cut(s)	752
BspPI	GGATC	2 cut(s)	92, 1016
BspT107I	GGYRCC	1 cut(s)	513
BsrDI	GCAATG	1 cut(s)	286
BsrGI	TGTACA	1 cut(s)	910
BsrI	ACTGG	4 cut(s)	47, 407, 590, 924
BssECI	CCNNGG	1 cut(s)	142
BssMI	GATC	5 cut(s)	97, 330, 666, 1008, 1012
BssNAI	GTATAC	1 cut(s)	24
Bst1107I	GTATAC	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	4 cut(s)	28, 61, 239, 712
BstAPI	GCANNNNNTGC	2 cut(s)	494, 526
BstAUI	TGTACA	1 cut(s)	910
BstC8I	GCNNGC	3 cut(s)	531, 750, 969
BstDEI	CTNAG	2 cut(s)	6, 206
BstENI	CCTNNNNNAGG	2 cut(s)	105, 392
BstF5I	GGATG	3 cut(s)	86, 324, 1042
BstHHI	GCGC	1 cut(s)	961
BstKTI	GATC	5 cut(s)	100, 333, 669, 1011, 1015
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	5 cut(s)	97, 330, 666, 1008, 1012
BstMWI	GCNNNNNNNGC	7 cut(s)	305, 348, 494, 526, 535, 953, 977
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	5 cut(s)	488, 533, 722, 740, 872
BstSCI	CCNGG	1 cut(s)	142
BstSLI	GKGCMC	1 cut(s)	484
BstV1I	GCAGC	6 cut(s)	160, 363, 682, 732, 958, 968
BstZ17I	GTATAC	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	1011
BsuRI	GGCC	1 cut(s)	431
BsuTUI	ATCGAT	1 cut(s)	1011
BtgZI	GCGATG	1 cut(s)	531
BtsCI	GGATG	3 cut(s)	86, 324, 1042
BtsIMutI	CAGTG	4 cut(s)	33, 66, 340, 400
Cac8I	GCNNGC	3 cut(s)	531, 750, 969
CaiI	CAGNNNCTG	1 cut(s)	919
CciI	TCATGA	1 cut(s)	417
CfoI	GCGC	1 cut(s)	961
Cfr13I	GGNCC	4 cut(s)	139, 227, 397, 429
ClaI	ATCGAT	1 cut(s)	1011
Csp6I	GTAC	3 cut(s)	514, 911, 1056
CspCI	CAANNNNNGTGG	2 cut(s)	628, 663
CviAII	CATG	7 cut(s)	275, 418, 485, 530, 719, 737, 869
CviQI	GTAC	3 cut(s)	514, 911, 1056
DdeI	CTNAG	2 cut(s)	6, 206
DpnI	GATC	5 cut(s)	99, 332, 668, 1010, 1014
DpnII	GATC	5 cut(s)	97, 330, 666, 1008, 1012
DraI	TTTAAA	1 cut(s)	234
Ecl136II	GAGCTC	1 cut(s)	859
Eco24I	GRGCYC	1 cut(s)	861
Eco47I	GGWCC	3 cut(s)	139, 227, 397
Eco53kI	GAGCTC	1 cut(s)	859
Eco88I	CYCGRG	1 cut(s)	91
EcoICRI	GAGCTC	1 cut(s)	859
EcoNI	CCTNNNNNAGG	2 cut(s)	105, 392
EcoO109I	RGGNCCY	2 cut(s)	139, 227
EcoRII	CCWGG	1 cut(s)	142
EcoT22I	ATGCAT	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	861
FaeI	CATG	7 cut(s)	278, 421, 488, 533, 722, 740, 872
FalI	AAGNNNNNCTT	2 cut(s)	789, 821
FaqI	GGGAC	2 cut(s)	125, 393
FatI	CATG	7 cut(s)	274, 417, 484, 529, 718, 736, 868
FbaI	TGATCA	1 cut(s)	666
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	6 cut(s)	174, 352, 696, 746, 957, 972
FokI	GGATG	3 cut(s)	73, 311, 1049
FriOI	GRGCYC	1 cut(s)	861
Fsp4HI	GCNGC	6 cut(s)	174, 352, 696, 746, 957, 972
FspBI	CTAG	6 cut(s)	51, 77, 192, 749, 884, 939
GlaI	GCGC	1 cut(s)	960
GluI	GCNGC	6 cut(s)	174, 352, 696, 746, 957, 972
GsuI	CTGGAG	1 cut(s)	1005
HaeIII	GGCC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	961
Hin1II	CATG	7 cut(s)	278, 421, 488, 533, 722, 740, 872
Hin6I	GCGC	1 cut(s)	959
HinP1I	GCGC	1 cut(s)	959
HinfI	GANTC	3 cut(s)	421, 472, 986
HphI	GGTGA	2 cut(s)	377, 579
Hpy166II	GTNNAC	2 cut(s)	24, 482
Hpy188I	TCNGA	4 cut(s)	477, 671, 758, 897
Hpy188III	TCNNGA	6 cut(s)	197, 328, 395, 418, 806, 1034
Hpy8I	GTNNAC	2 cut(s)	24, 482
HpyAV	CCTTC	2 cut(s)	645, 755
HpyCH4III	ACNGT	4 cut(s)	28, 61, 239, 712
HpyCH4IV	ACGT	1 cut(s)	615
HpyF10VI	GCNNNNNNNGC	7 cut(s)	305, 348, 494, 526, 535, 953, 977
HpyF3I	CTNAG	2 cut(s)	6, 206
HpySE526I	ACGT	1 cut(s)	615
Hsp92II	CATG	7 cut(s)	278, 421, 488, 533, 722, 740, 872
HspAI	GCGC	1 cut(s)	959
KpnI	GGTACC	1 cut(s)	517
Ksp22I	TGATCA	1 cut(s)	666
Kzo9I	GATC	5 cut(s)	97, 330, 666, 1008, 1012
LmnI	GCTCC	3 cut(s)	623, 940, 1024
Lsp1109I	GCAGC	6 cut(s)	160, 363, 682, 732, 958, 968
LweI	GCATC	5 cut(s)	244, 292, 382, 835, 1027
MaeI	CTAG	6 cut(s)	51, 77, 192, 749, 884, 939
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	3 cut(s)	592, 812, 879
MalI	GATC	5 cut(s)	99, 332, 668, 1010, 1014
MboI	GATC	5 cut(s)	97, 330, 666, 1008, 1012
MboII	GAAGA	5 cut(s)	65, 451, 684, 767, 1022
MfeI	CAATTG	1 cut(s)	489
MhlI	GDGCHC	2 cut(s)	484, 861
MluCI	AATT	6 cut(s)	156, 489, 521, 765, 783, 905
MnlI	CCTC	7 cut(s)	100, 101, 162, 398, 644, 736, 1006
Mph1103I	ATGCAT	1 cut(s)	375
MseI	TTAA	3 cut(s)	233, 368, 413
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	144
MwoI	GCNNNNNNNGC	7 cut(s)	305, 348, 494, 526, 535, 953, 977
NdeII	GATC	5 cut(s)	97, 330, 666, 1008, 1012
NheI	GCTAGC	1 cut(s)	748
NlaIII	CATG	7 cut(s)	278, 421, 488, 533, 722, 740, 872
NlaIV	GGNNCC	2 cut(s)	141, 515
NmuCI	GTSAC	1 cut(s)	812
NsiI	ATGCAT	1 cut(s)	375
NspI	RCATGY	5 cut(s)	488, 533, 722, 740, 872
PaeI	GCATGC	1 cut(s)	533
PaeR7I	CTCGAG	1 cut(s)	91
PagI	TCATGA	1 cut(s)	417
PciI	ACATGT	2 cut(s)	718, 736
PctI	GAATGC	1 cut(s)	344
PfeI	GAWTC	3 cut(s)	421, 472, 986
PkrI	GCNGC	6 cut(s)	175, 353, 697, 747, 958, 973
PpuMI	RGGWCCY	2 cut(s)	139, 227
PscI	ACATGT	2 cut(s)	718, 736
PshBI	ATTAAT	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	861
Psp1406I	AACGTT	1 cut(s)	615
Psp5II	RGGWCCY	2 cut(s)	139, 227
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	141, 515
PspPI	GGNCC	4 cut(s)	139, 227, 397, 429
PspPPI	RGGWCCY	2 cut(s)	139, 227
PspXI	VCTCGAGB	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	919
RsaI	GTAC	3 cut(s)	515, 912, 1057
RsaNI	GTAC	3 cut(s)	514, 911, 1056
SacI	GAGCTC	1 cut(s)	861
SaqAI	TTAA	3 cut(s)	233, 368, 413
SatI	GCNGC	6 cut(s)	174, 352, 696, 746, 957, 972
Sau3AI	GATC	5 cut(s)	97, 330, 666, 1008, 1012
Sau96I	GGNCC	4 cut(s)	139, 227, 397, 429
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	2 cut(s)	484, 861
SfaNI	GCATC	5 cut(s)	244, 292, 382, 835, 1027
Sfr274I	CTCGAG	1 cut(s)	91
SinI	GGWCC	3 cut(s)	139, 227, 397
SlaI	CTCGAG	1 cut(s)	91
SmlI	CTYRAG	2 cut(s)	91, 999
SmoI	CTYRAG	2 cut(s)	91, 999
SphI	GCATGC	1 cut(s)	533
Sse9I	AATT	6 cut(s)	156, 489, 521, 765, 783, 905
SspI	AATATT	2 cut(s)	184, 578
SspMI	CTAG	6 cut(s)	51, 77, 192, 749, 884, 939
SstI	GAGCTC	1 cut(s)	861
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	4 cut(s)	28, 61, 239, 712
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	4 cut(s)	92, 106, 196, 1011
TasI	AATT	6 cut(s)	156, 489, 521, 765, 783, 905
TatI	WGTACW	1 cut(s)	910
TfiI	GAWTC	3 cut(s)	421, 472, 986
Tru1I	TTAA	3 cut(s)	233, 368, 413
Tru9I	TTAA	3 cut(s)	233, 368, 413
TscAI	CASTG	4 cut(s)	33, 66, 340, 407
TseFI	GTSAC	1 cut(s)	812
TseI	GCWGC	6 cut(s)	173, 351, 695, 745, 956, 971
Tsp45I	GTSAC	1 cut(s)	812
TspDTI	ATGAA	1 cut(s)	879
TspRI	CASTG	4 cut(s)	33, 66, 340, 407
VneI	GTGCAC	1 cut(s)	480
VpaK11BI	GGWCC	3 cut(s)	139, 227, 397
VspI	ATTAAT	1 cut(s)	413
XagI	CCTNNNNNAGG	2 cut(s)	105, 392
XapI	RAATTY	2 cut(s)	156, 905
XceI	RCATGY	5 cut(s)	488, 533, 722, 740, 872
XcmI	CCANNNNNNNNNTGG	1 cut(s)	576
XhoI	CTCGAG	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	23
XspI	CTAG	6 cut(s)	51, 77, 192, 749, 884, 939
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.