ribosome-binding factor A
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SAD_SRA | PF02182 | 25 - 66 | 2.6e-09 | SAD/SRA domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 162 |
| Acc36I | ACCTGC | 1 cut(s) | 211 |
| AciI | CCGC | 4 cut(s) | 6, 139, 591, 948 |
| AcsI | RAATTY | 1 cut(s) | 21 |
| AcuI | CTGAAG | 1 cut(s) | 810 |
| AdeI | CACNNNGTG | 1 cut(s) | 512 |
| AflIII | ACRYGT | 1 cut(s) | 936 |
| AgsI | TTSAA | 4 cut(s) | 28, 128, 268, 665 |
| AjiI | CACGTC | 1 cut(s) | 582 |
| AleI | CACNNNNGTG | 1 cut(s) | 44 |
| AluBI | AGCT | 4 cut(s) | 533, 653, 788, 992 |
| AluI | AGCT | 4 cut(s) | 533, 653, 788, 992 |
| Alw21I | GWGCWC | 2 cut(s) | 610, 955 |
| Alw26I | GTCTC | 2 cut(s) | 59, 924 |
| Ama87I | CYCGRG | 1 cut(s) | 689 |
| AoxI | GGCC | 1 cut(s) | 242 |
| ApeKI | GCWGC | 2 cut(s) | 525, 989 |
| ApoI | RAATTY | 1 cut(s) | 21 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 58, 90 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 447 |
| AspLEI | GCGC | 2 cut(s) | 85, 208 |
| AspS9I | GGNCC | 1 cut(s) | 232 |
| AsuHPI | GGTGA | 1 cut(s) | 821 |
| AvaI | CYCGRG | 1 cut(s) | 689 |
| AvaII | GGWCC | 1 cut(s) | 232 |
| BbsI | GAAGAC | 2 cut(s) | 753, 834 |
| Bbv12I | GWGCWC | 2 cut(s) | 610, 955 |
| BbvCI | CCTCAGC | 1 cut(s) | 753 |
| BbvI | GCAGC | 2 cut(s) | 512, 1001 |
| BccI | CCATC | 5 cut(s) | 104, 140, 243, 389, 938 |
| BceAI | ACGGC | 1 cut(s) | 437 |
| BclI | TGATCA | 1 cut(s) | 223 |
| BcoDI | GTCTC | 2 cut(s) | 59, 924 |
| BfaI | CTAG | 1 cut(s) | 993 |
| BfmI | CTRYAG | 1 cut(s) | 867 |
| BfuAI | ACCTGC | 1 cut(s) | 211 |
| BisI | GCNGC | 2 cut(s) | 526, 990 |
| BlsI | GCNGC | 2 cut(s) | 527, 991 |
| Bme18I | GGWCC | 1 cut(s) | 232 |
| BmeT110I | CYCGRG | 1 cut(s) | 689 |
| BmgBI | CACGTC | 1 cut(s) | 582 |
| BmgT120I | GGNCC | 1 cut(s) | 232 |
| BmiI | GGNNCC | 1 cut(s) | 233 |
| BmsI | GCATC | 2 cut(s) | 310, 849 |
| BpiI | GAAGAC | 2 cut(s) | 753, 834 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 56, 88 |
| BpmI | CTGGAG | 1 cut(s) | 695 |
| Bpu10I | CCTNAGC | 1 cut(s) | 753 |
| BsaJI | CCNNGG | 3 cut(s) | 209, 239, 586 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 921, 951 |
| Bse118I | RCCGGY | 1 cut(s) | 806 |
| Bse1I | ACTGG | 2 cut(s) | 378, 497 |
| Bse3DI | GCAATG | 2 cut(s) | 599, 931 |
| BseDI | CCNNGG | 3 cut(s) | 209, 239, 586 |
| BseGI | GGATG | 4 cut(s) | 235, 345, 840, 949 |
| BseMI | GCAATG | 2 cut(s) | 599, 931 |
| BseMII | CTCAG | 2 cut(s) | 744, 869 |
| BseNI | ACTGG | 2 cut(s) | 378, 497 |
| BseRI | GAGGAG | 1 cut(s) | 988 |
| BseXI | GCAGC | 2 cut(s) | 512, 1001 |
| BshFI | GGCC | 1 cut(s) | 244 |
| BsiHKAI | GWGCWC | 2 cut(s) | 610, 955 |
| BsiHKCI | CYCGRG | 1 cut(s) | 689 |
| BsiSI | CCGG | 1 cut(s) | 807 |
| BslFI | GGGAC | 3 cut(s) | 111, 245, 326 |
| BsmAI | GTCTC | 2 cut(s) | 59, 924 |
| BsmFI | GGGAC | 3 cut(s) | 111, 245, 326 |
| BsmI | GAATGC | 2 cut(s) | 8, 439 |
| BsnI | GGCC | 1 cut(s) | 244 |
| BsoBI | CYCGRG | 1 cut(s) | 689 |
| Bsp1286I | GDGCHC | 2 cut(s) | 610, 955 |
| Bsp143I | GATC | 1 cut(s) | 223 |
| BspACI | CCGC | 4 cut(s) | 6, 139, 591, 948 |
| BspANI | GGCC | 1 cut(s) | 244 |
| BspCNI | CTCAG | 2 cut(s) | 745, 868 |
| BspHI | TCATGA | 2 cut(s) | 621, 1010 |
| BspLI | GGNNCC | 1 cut(s) | 233 |
| BspMI | ACCTGC | 1 cut(s) | 211 |
| BspQI | GCTCTTC | 1 cut(s) | 79 |
| BsrDI | GCAATG | 2 cut(s) | 599, 931 |
| BsrFI | RCCGGY | 1 cut(s) | 806 |
| BsrI | ACTGG | 2 cut(s) | 378, 497 |
| BssAI | RCCGGY | 1 cut(s) | 806 |
| BssECI | CCNNGG | 3 cut(s) | 209, 239, 586 |
| BssMI | GATC | 1 cut(s) | 223 |
| BssT1I | CCWWGG | 3 cut(s) | 209, 239, 586 |
| Bst4CI | ACNGT | 1 cut(s) | 272 |
| Bst6I | CTCTTC | 3 cut(s) | 79, 771, 807 |
| BstC8I | GCNNGC | 2 cut(s) | 334, 606 |
| BstDEI | CTNAG | 3 cut(s) | 362, 753, 855 |
| BstF5I | GGATG | 4 cut(s) | 235, 345, 840, 949 |
| BstHHI | GCGC | 2 cut(s) | 85, 208 |
| BstKTI | GATC | 1 cut(s) | 226 |
| BstMAI | GTCTC | 2 cut(s) | 59, 924 |
| BstMBI | GATC | 1 cut(s) | 223 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 55, 329 |
| BstSFI | CTRYAG | 1 cut(s) | 867 |
| BstV1I | GCAGC | 2 cut(s) | 512, 1001 |
| BstV2I | GAAGAC | 2 cut(s) | 753, 834 |
| BsuRI | GGCC | 1 cut(s) | 244 |
| BtrI | CACGTC | 1 cut(s) | 582 |
| BtsCI | GGATG | 4 cut(s) | 235, 345, 840, 949 |
| BtsIMutI | CAGTG | 2 cut(s) | 277, 953 |
| BveI | ACCTGC | 1 cut(s) | 211 |
| Cac8I | GCNNGC | 2 cut(s) | 334, 606 |
| CciI | TCATGA | 2 cut(s) | 621, 1010 |
| CfoI | GCGC | 2 cut(s) | 85, 208 |
| Cfr10I | RCCGGY | 1 cut(s) | 806 |
| Cfr13I | GGNCC | 1 cut(s) | 232 |
| CseI | GACGC | 1 cut(s) | 758 |
| CviAII | CATG | 5 cut(s) | 227, 510, 622, 644, 1011 |
| CviJI | RGCY | 7 cut(s) | 244, 352, 533, 653, 788, 824, 992 |
| CviKI_1 | RGCY | 7 cut(s) | 244, 352, 533, 653, 788, 824, 992 |
| DdeI | CTNAG | 3 cut(s) | 362, 753, 855 |
| DpnI | GATC | 1 cut(s) | 225 |
| DpnII | GATC | 1 cut(s) | 223 |
| DraIII | CACNNNGTG | 1 cut(s) | 512 |
| Eam1104I | CTCTTC | 3 cut(s) | 79, 771, 807 |
| EarI | CTCTTC | 3 cut(s) | 79, 771, 807 |
| EciI | GGCGGA | 3 cut(s) | 154, 606, 963 |
| Eco130I | CCWWGG | 3 cut(s) | 209, 239, 586 |
| Eco147I | AGGCCT | 1 cut(s) | 244 |
| Eco32I | GATATC | 1 cut(s) | 176 |
| Eco47I | GGWCC | 1 cut(s) | 232 |
| Eco57I | CTGAAG | 1 cut(s) | 810 |
| Eco88I | CYCGRG | 1 cut(s) | 689 |
| EcoRV | GATATC | 1 cut(s) | 176 |
| EcoT14I | CCWWGG | 3 cut(s) | 209, 239, 586 |
| ErhI | CCWWGG | 3 cut(s) | 209, 239, 586 |
| FaeI | CATG | 5 cut(s) | 230, 513, 625, 647, 1014 |
| FaqI | GGGAC | 3 cut(s) | 111, 245, 326 |
| FatI | CATG | 5 cut(s) | 226, 509, 621, 643, 1010 |
| FbaI | TGATCA | 1 cut(s) | 223 |
| Fnu4HI | GCNGC | 2 cut(s) | 526, 990 |
| FokI | GGATG | 4 cut(s) | 222, 352, 827, 956 |
| Fsp4HI | GCNGC | 2 cut(s) | 526, 990 |
| FspBI | CTAG | 1 cut(s) | 993 |
| GlaI | GCGC | 2 cut(s) | 84, 207 |
| GluI | GCNGC | 2 cut(s) | 526, 990 |
| GsuI | CTGGAG | 1 cut(s) | 695 |
| HaeIII | GGCC | 1 cut(s) | 244 |
| HapII | CCGG | 1 cut(s) | 807 |
| HgaI | GACGC | 1 cut(s) | 758 |
| HhaI | GCGC | 2 cut(s) | 85, 208 |
| Hin1II | CATG | 5 cut(s) | 230, 513, 625, 647, 1014 |
| Hin6I | GCGC | 2 cut(s) | 83, 206 |
| HinP1I | GCGC | 2 cut(s) | 83, 206 |
| HindIII | AAGCTT | 1 cut(s) | 531 |
| HinfI | GANTC | 2 cut(s) | 685, 1007 |
| HpaII | CCGG | 1 cut(s) | 807 |
| HphI | GGTGA | 1 cut(s) | 821 |
| Hpy166II | GTNNAC | 2 cut(s) | 118, 641 |
| Hpy188I | TCNGA | 3 cut(s) | 480, 858, 1002 |
| Hpy188III | TCNNGA | 5 cut(s) | 28, 622, 689, 691, 1011 |
| Hpy8I | GTNNAC | 2 cut(s) | 118, 641 |
| HpyAV | CCTTC | 1 cut(s) | 315 |
| HpyCH4III | ACNGT | 1 cut(s) | 272 |
| HpyCH4IV | ACGT | 3 cut(s) | 581, 618, 936 |
| HpyCH4V | TGCA | 7 cut(s) | 49, 171, 260, 323, 528, 541, 734 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 55, 329 |
| HpyF3I | CTNAG | 3 cut(s) | 362, 753, 855 |
| HpySE526I | ACGT | 3 cut(s) | 581, 618, 936 |
| Hsp92II | CATG | 5 cut(s) | 230, 513, 625, 647, 1014 |
| HspAI | GCGC | 2 cut(s) | 83, 206 |
| Ksp22I | TGATCA | 1 cut(s) | 223 |
| Kzo9I | GATC | 1 cut(s) | 223 |
| LguI | GCTCTTC | 1 cut(s) | 79 |
| LmnI | GCTCC | 2 cut(s) | 950, 986 |
| Lsp1109I | GCAGC | 2 cut(s) | 512, 1001 |
| LweI | GCATC | 2 cut(s) | 310, 849 |
| MaeI | CTAG | 1 cut(s) | 993 |
| MaeII | ACGT | 3 cut(s) | 581, 618, 936 |
| MaeIII | GTNAC | 2 cut(s) | 191, 499 |
| MalI | GATC | 1 cut(s) | 225 |
| MboI | GATC | 1 cut(s) | 223 |
| MhlI | GDGCHC | 2 cut(s) | 610, 955 |
| MluCI | AATT | 3 cut(s) | 21, 405, 704 |
| MmeI | TCCRAC | 1 cut(s) | 921 |
| MnlI | CCTC | 9 cut(s) | 85, 255, 363, 570, 715, 730, 748, 772, 966 |
| MroXI | GAANNNNTTC | 1 cut(s) | 447 |
| MseI | TTAA | 2 cut(s) | 566, 678 |
| MslI | CAYNNNNRTG | 1 cut(s) | 44 |
| MspI | CCGG | 1 cut(s) | 807 |
| Mva1269I | GAATGC | 2 cut(s) | 8, 439 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 55, 329 |
| NdeII | GATC | 1 cut(s) | 223 |
| NlaIII | CATG | 5 cut(s) | 230, 513, 625, 647, 1014 |
| NlaIV | GGNNCC | 1 cut(s) | 233 |
| NmuCI | GTSAC | 1 cut(s) | 191 |
| OliI | CACNNNNGTG | 1 cut(s) | 44 |
| PaeR7I | CTCGAG | 1 cut(s) | 689 |
| PagI | TCATGA | 2 cut(s) | 621, 1010 |
| PceI | AGGCCT | 1 cut(s) | 244 |
| PciSI | GCTCTTC | 1 cut(s) | 79 |
| PctI | GAATGC | 2 cut(s) | 8, 439 |
| PdmI | GAANNNNTTC | 1 cut(s) | 447 |
| PfeI | GAWTC | 2 cut(s) | 685, 1007 |
| PkrI | GCNGC | 2 cut(s) | 527, 991 |
| PsiI | TTATAA | 1 cut(s) | 162 |
| PspN4I | GGNNCC | 1 cut(s) | 233 |
| PspPI | GGNCC | 1 cut(s) | 232 |
| RseI | CAYNNNNRTG | 1 cut(s) | 44 |
| SapI | GCTCTTC | 1 cut(s) | 79 |
| SaqAI | TTAA | 2 cut(s) | 566, 678 |
| SatI | GCNGC | 2 cut(s) | 526, 990 |
| Sau3AI | GATC | 1 cut(s) | 223 |
| Sau96I | GGNCC | 1 cut(s) | 232 |
| SduI | GDGCHC | 2 cut(s) | 610, 955 |
| SfaNI | GCATC | 2 cut(s) | 310, 849 |
| SfcI | CTRYAG | 1 cut(s) | 867 |
| Sfr274I | CTCGAG | 1 cut(s) | 689 |
| SinI | GGWCC | 1 cut(s) | 232 |
| SlaI | CTCGAG | 1 cut(s) | 689 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 44 |
| SmlI | CTYRAG | 1 cut(s) | 689 |
| SmoI | CTYRAG | 1 cut(s) | 689 |
| Sse9I | AATT | 3 cut(s) | 21, 405, 704 |
| SseBI | AGGCCT | 1 cut(s) | 244 |
| SsiI | CCGC | 4 cut(s) | 6, 139, 591, 948 |
| SspMI | CTAG | 1 cut(s) | 993 |
| StuI | AGGCCT | 1 cut(s) | 244 |
| StyI | CCWWGG | 3 cut(s) | 209, 239, 586 |
| TaaI | ACNGT | 1 cut(s) | 272 |
| TaiI | ACGT | 3 cut(s) | 584, 621, 939 |
| TaqI | TCGA | 3 cut(s) | 355, 690, 920 |
| TasI | AATT | 3 cut(s) | 21, 405, 704 |
| TfiI | GAWTC | 2 cut(s) | 685, 1007 |
| Tru1I | TTAA | 2 cut(s) | 566, 678 |
| Tru9I | TTAA | 2 cut(s) | 566, 678 |
| TscAI | CASTG | 2 cut(s) | 277, 960 |
| TseFI | GTSAC | 1 cut(s) | 191 |
| TseI | GCWGC | 2 cut(s) | 525, 989 |
| Tsp45I | GTSAC | 1 cut(s) | 191 |
| TspDTI | ATGAA | 4 cut(s) | 638, 777, 786, 999 |
| TspGWI | ACGGA | 1 cut(s) | 104 |
| TspRI | CASTG | 2 cut(s) | 277, 960 |
| VpaK11BI | GGWCC | 1 cut(s) | 232 |
| XapI | RAATTY | 1 cut(s) | 21 |
| XhoI | CTCGAG | 1 cut(s) | 689 |
| XmnI | GAANNNNTTC | 1 cut(s) | 447 |
| XspI | CTAG | 1 cut(s) | 993 |