Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2399 |
| Acc16I | TGCGCA | 1 cut(s) | 1305 |
| Acc36I | ACCTGC | 1 cut(s) | 2399 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 76 |
| AciI | CCGC | 2 cut(s) | 1139, 1757 |
| AclWI | GGATC | 5 cut(s) | 314, 695, 708, 1176, 1214 |
| AcoI | YGGCCR | 1 cut(s) | 468 |
| AcuI | CTGAAG | 5 cut(s) | 225, 1159, 1533, 1737, 1977 |
| AfaI | GTAC | 5 cut(s) | 241, 1017, 1605, 2040, 2223 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 76, 179, 436, 1778 |
| AflII | CTTAAG | 1 cut(s) | 1805 |
| AflIII | ACRYGT | 1 cut(s) | 196 |
| AjnI | CCWGG | 3 cut(s) | 505, 1738, 2277 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 348, 380 |
| Alw26I | GTCTC | 7 cut(s) | 679, 730, 1138, 1429, 1441, 1513, 2015 |
| AlwI | GGATC | 5 cut(s) | 314, 695, 708, 1176, 1214 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2111 |
| AoxI | GGCC | 2 cut(s) | 468, 1465 |
| ApeKI | GCWGC | 4 cut(s) | 230, 566, 1751, 1754 |
| AspA2I | CCTAGG | 1 cut(s) | 430 |
| AspLEI | GCGC | 1 cut(s) | 1306 |
| AspS9I | GGNCC | 4 cut(s) | 23, 370, 1001, 1050 |
| AsuNHI | GCTAGC | 1 cut(s) | 2326 |
| AvaII | GGWCC | 4 cut(s) | 23, 370, 1001, 1050 |
| AvrII | CCTAGG | 1 cut(s) | 430 |
| BaeGI | GKGCMC | 1 cut(s) | 2100 |
| BamHI | GGATCC | 1 cut(s) | 700 |
| BanII | GRGCYC | 3 cut(s) | 309, 690, 791 |
| BbvCI | CCTCAGC | 1 cut(s) | 1315 |
| BbvI | GCAGC | 4 cut(s) | 217, 578, 1738, 1766 |
| BccI | CCATC | 2 cut(s) | 815, 1895 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 241, 275, 1337, 1371 |
| BciT130I | CCWGG | 3 cut(s) | 507, 1740, 2279 |
| BciVI | GTATCC | 3 cut(s) | 91, 391, 769 |
| BclI | TGATCA | 1 cut(s) | 955 |
| BcoDI | GTCTC | 7 cut(s) | 679, 730, 1138, 1429, 1441, 1513, 2015 |
| BfaI | CTAG | 5 cut(s) | 431, 729, 1563, 1878, 2327 |
| BfmI | CTRYAG | 5 cut(s) | 1149, 1452, 1752, 2091, 2103 |
| BfrI | CTTAAG | 1 cut(s) | 1805 |
| BfuAI | ACCTGC | 1 cut(s) | 2399 |
| BfuI | GTATCC | 3 cut(s) | 91, 391, 769 |
| BglII | AGATCT | 1 cut(s) | 2064 |
| BisI | GCNGC | 4 cut(s) | 231, 567, 1752, 1755 |
| BlnI | CCTAGG | 1 cut(s) | 430 |
| BlsI | GCNGC | 4 cut(s) | 232, 568, 1753, 1756 |
| BmcAI | AGTACT | 1 cut(s) | 241 |
| Bme1390I | CCNGG | 3 cut(s) | 507, 1740, 2279 |
| Bme18I | GGWCC | 4 cut(s) | 23, 370, 1001, 1050 |
| BmgT120I | GGNCC | 4 cut(s) | 23, 370, 1001, 1050 |
| BmiI | GGNNCC | 3 cut(s) | 371, 702, 1052 |
| BmrFI | CCNGG | 3 cut(s) | 507, 1740, 2279 |
| BmrI | ACTGGG | 1 cut(s) | 1007 |
| BmsI | GCATC | 5 cut(s) | 114, 193, 268, 1178, 2272 |
| BmtI | GCTAGC | 1 cut(s) | 2330 |
| BmuI | ACTGGG | 1 cut(s) | 1007 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1771 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 401, 433, 890, 922 |
| BpmI | CTGGAG | 3 cut(s) | 917, 1761, 1905 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1315 |
| BpuEI | CTTGAG | 3 cut(s) | 334, 425, 803 |
| BsaAI | YACGTR | 1 cut(s) | 1607 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1909 |
| BsaI | GGTCTC | 4 cut(s) | 679, 1429, 1513, 2015 |
| BsaJI | CCNNGG | 5 cut(s) | 364, 430, 771, 1236, 1738 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 2417 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 76, 179, 436, 1778 |
| Bse1I | ACTGG | 6 cut(s) | 536, 1013, 1052, 1938, 2116, 2353 |
| Bse3DI | GCAATG | 3 cut(s) | 970, 1251, 1551 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1909 |
| BseBI | CCWGG | 3 cut(s) | 507, 1740, 2279 |
| BseDI | CCNNGG | 5 cut(s) | 364, 430, 771, 1236, 1738 |
| BseJI | GATNNNNATC | 1 cut(s) | 1909 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 76, 179, 436, 1778 |
| BseMI | GCAATG | 3 cut(s) | 970, 1251, 1551 |
| BseMII | CTCAG | 9 cut(s) | 567, 707, 804, 858, 1329, 1355, 1374, 1443, 1587 |
| BseNI | ACTGG | 6 cut(s) | 536, 1013, 1052, 1938, 2116, 2353 |
| BseRI | GAGGAG | 3 cut(s) | 422, 1417, 1472 |
| BseSI | GKGCMC | 1 cut(s) | 2100 |
| BseXI | GCAGC | 4 cut(s) | 217, 578, 1738, 1766 |
| BshFI | GGCC | 2 cut(s) | 470, 1467 |
| BsiWI | CGTACG | 1 cut(s) | 1603 |
| BslFI | GGGAC | 1 cut(s) | 383 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 76, 179, 436, 1778 |
| BsmAI | GTCTC | 7 cut(s) | 679, 730, 1138, 1429, 1441, 1513, 2015 |
| BsmFI | GGGAC | 1 cut(s) | 383 |
| BsmI | GAATGC | 3 cut(s) | 127, 232, 1753 |
| BsnI | GGCC | 2 cut(s) | 470, 1467 |
| Bso31I | GGTCTC | 4 cut(s) | 679, 1429, 1513, 2015 |
| Bsp1286I | GDGCHC | 4 cut(s) | 309, 690, 791, 2100 |
| Bsp143I | GATC | 7 cut(s) | 319, 700, 955, 1181, 1206, 2064, 2258 |
| Bsp19I | CCATGG | 1 cut(s) | 771 |
| BspACI | CCGC | 2 cut(s) | 1139, 1757 |
| BspANI | GGCC | 2 cut(s) | 470, 1467 |
| BspCNI | CTCAG | 9 cut(s) | 568, 708, 803, 857, 1328, 1354, 1375, 1442, 1588 |
| BspLI | GGNNCC | 3 cut(s) | 371, 702, 1052 |
| BspMAI | CTGCAG | 2 cut(s) | 1756, 2107 |
| BspMI | ACCTGC | 1 cut(s) | 2399 |
| BspOI | GCTAGC | 1 cut(s) | 2330 |
| BspPI | GGATC | 5 cut(s) | 314, 695, 708, 1176, 1214 |
| BspTI | CTTAAG | 1 cut(s) | 1805 |
| BspTNI | GGTCTC | 4 cut(s) | 679, 1429, 1513, 2015 |
| BsrDI | GCAATG | 3 cut(s) | 970, 1251, 1551 |
| BsrI | ACTGG | 6 cut(s) | 536, 1013, 1052, 1938, 2116, 2353 |
| BssECI | CCNNGG | 5 cut(s) | 364, 430, 771, 1236, 1738 |
| BssMI | GATC | 7 cut(s) | 319, 700, 955, 1181, 1206, 2064, 2258 |
| BssT1I | CCWWGG | 3 cut(s) | 364, 430, 771 |
| Bst2UI | CCWGG | 3 cut(s) | 507, 1740, 2279 |
| Bst4CI | ACNGT | 4 cut(s) | 667, 1933, 2038, 2150 |
| Bst6I | CTCTTC | 2 cut(s) | 913, 2294 |
| BstAFI | CTTAAG | 1 cut(s) | 1805 |
| BstBAI | YACGTR | 1 cut(s) | 1607 |
| BstC8I | GCNNGC | 5 cut(s) | 260, 335, 1652, 1656, 2328 |
| BstDSI | CCRYGG | 1 cut(s) | 771 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 177, 434 |
| BstHHI | GCGC | 1 cut(s) | 1306 |
| BstKTI | GATC | 7 cut(s) | 322, 703, 958, 1184, 1209, 2067, 2261 |
| BstMAI | GTCTC | 7 cut(s) | 679, 730, 1138, 1429, 1441, 1513, 2015 |
| BstMBI | GATC | 7 cut(s) | 319, 700, 955, 1181, 1206, 2064, 2258 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1651 |
| BstNI | CCWGG | 3 cut(s) | 507, 1740, 2279 |
| BstNSI | RCATGY | 2 cut(s) | 200, 983 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1771 |
| BstSCI | CCNGG | 3 cut(s) | 505, 1738, 2277 |
| BstSFI | CTRYAG | 5 cut(s) | 1149, 1452, 1752, 2091, 2103 |
| BstSLI | GKGCMC | 1 cut(s) | 2100 |
| BstV1I | GCAGC | 4 cut(s) | 217, 578, 1738, 1766 |
| BstX2I | RGATCY | 5 cut(s) | 319, 700, 1181, 1206, 2064 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 697 |
| BstYI | RGATCY | 5 cut(s) | 319, 700, 1181, 1206, 2064 |
| BsuI | GTATCC | 3 cut(s) | 91, 391, 769 |
| BsuRI | GGCC | 2 cut(s) | 470, 1467 |
| BtgI | CCRYGG | 1 cut(s) | 771 |
| BtsI | GCAGTG | 1 cut(s) | 1987 |
| BtsIMutI | CAGTG | 5 cut(s) | 138, 591, 1812, 1953, 1987 |
| BveI | ACCTGC | 1 cut(s) | 2399 |
| Cac8I | GCNNGC | 5 cut(s) | 260, 335, 1652, 1656, 2328 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2111 |
| CfoI | GCGC | 1 cut(s) | 1306 |
| Cfr13I | GGNCC | 4 cut(s) | 23, 370, 1001, 1050 |
| Csp6I | GTAC | 5 cut(s) | 240, 1016, 1604, 2039, 2222 |
| CviQI | GTAC | 5 cut(s) | 240, 1016, 1604, 2039, 2222 |
| DpnI | GATC | 7 cut(s) | 321, 702, 957, 1183, 1208, 2066, 2260 |
| DpnII | GATC | 7 cut(s) | 319, 700, 955, 1181, 1206, 2064, 2258 |
| DraI | TTTAAA | 2 cut(s) | 12, 1336 |
| EaeI | YGGCCR | 1 cut(s) | 468 |
| Eam1104I | CTCTTC | 2 cut(s) | 913, 2294 |
| EarI | CTCTTC | 2 cut(s) | 913, 2294 |
| Eco130I | CCWWGG | 3 cut(s) | 364, 430, 771 |
| Eco24I | GRGCYC | 3 cut(s) | 309, 690, 791 |
| Eco31I | GGTCTC | 4 cut(s) | 679, 1429, 1513, 2015 |
| Eco32I | GATATC | 1 cut(s) | 1681 |
| Eco47I | GGWCC | 4 cut(s) | 23, 370, 1001, 1050 |
| Eco57I | CTGAAG | 5 cut(s) | 225, 1159, 1533, 1737, 1977 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 177, 434 |
| EcoRI | GAATTC | 3 cut(s) | 1102, 1447, 1637 |
| EcoRII | CCWGG | 3 cut(s) | 505, 1738, 2277 |
| EcoRV | GATATC | 1 cut(s) | 1681 |
| EcoT14I | CCWWGG | 3 cut(s) | 364, 430, 771 |
| EcoT22I | ATGCAT | 2 cut(s) | 129, 809 |
| EcoT38I | GRGCYC | 3 cut(s) | 309, 690, 791 |
| ErhI | CCWWGG | 3 cut(s) | 364, 430, 771 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1950, 1982 |
| FaqI | GGGAC | 1 cut(s) | 383 |
| FbaI | TGATCA | 1 cut(s) | 955 |
| Fnu4HI | GCNGC | 4 cut(s) | 231, 567, 1752, 1755 |
| FriOI | GRGCYC | 3 cut(s) | 309, 690, 791 |
| Fsp4HI | GCNGC | 4 cut(s) | 231, 567, 1752, 1755 |
| FspBI | CTAG | 5 cut(s) | 431, 729, 1563, 1878, 2327 |
| FspI | TGCGCA | 1 cut(s) | 1305 |
| GlaI | GCGC | 1 cut(s) | 1305 |
| GluI | GCNGC | 4 cut(s) | 231, 567, 1752, 1755 |
| GsuI | CTGGAG | 3 cut(s) | 917, 1761, 1905 |
| HaeIII | GGCC | 2 cut(s) | 470, 1467 |
| HhaI | GCGC | 1 cut(s) | 1306 |
| Hin6I | GCGC | 1 cut(s) | 1304 |
| HinP1I | GCGC | 1 cut(s) | 1304 |
| HincII | GTYRAC | 5 cut(s) | 442, 498, 853, 903, 1233 |
| HindII | GTYRAC | 5 cut(s) | 442, 498, 853, 903, 1233 |
| HindIII | AAGCTT | 1 cut(s) | 256 |
| HpaI | GTTAAC | 3 cut(s) | 498, 853, 1233 |
| Hpy166II | GTNNAC | 8 cut(s) | 356, 442, 498, 853, 903, 1233, 1812, 2222 |
| Hpy188III | TCNNGA | 7 cut(s) | 404, 704, 782, 2010, 2046, 2062, 2394 |
| Hpy8I | GTNNAC | 8 cut(s) | 356, 442, 498, 853, 903, 1233, 1812, 2222 |
| HpyAV | CCTTC | 7 cut(s) | 1016, 1183, 1486, 1786, 1994, 2052, 2305 |
| HpyCH4III | ACNGT | 4 cut(s) | 667, 1933, 2038, 2150 |
| HpyCH4IV | ACGT | 1 cut(s) | 1606 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1651 |
| HpySE526I | ACGT | 1 cut(s) | 1606 |
| HspAI | GCGC | 1 cut(s) | 1304 |
| Ksp22I | TGATCA | 1 cut(s) | 955 |
| KspAI | GTTAAC | 3 cut(s) | 498, 853, 1233 |
| Kzo9I | GATC | 7 cut(s) | 319, 700, 955, 1181, 1206, 2064, 2258 |
| LmnI | GCTCC | 4 cut(s) | 604, 1490, 1924, 2425 |
| Lsp1109I | GCAGC | 4 cut(s) | 217, 578, 1738, 1766 |
| LweI | GCATC | 5 cut(s) | 114, 193, 268, 1178, 2272 |
| MaeI | CTAG | 5 cut(s) | 431, 729, 1563, 1878, 2327 |
| MaeII | ACGT | 1 cut(s) | 1606 |
| MaeIII | GTNAC | 6 cut(s) | 325, 531, 936, 1607, 2150, 2411 |
| MalI | GATC | 7 cut(s) | 321, 702, 957, 1183, 1208, 2066, 2260 |
| MboI | GATC | 7 cut(s) | 319, 700, 955, 1181, 1206, 2064, 2258 |
| MfeI | CAATTG | 2 cut(s) | 942, 1992 |
| MflI | RGATCY | 5 cut(s) | 319, 700, 1181, 1206, 2064 |
| MhlI | GDGCHC | 4 cut(s) | 309, 690, 791, 2100 |
| MmeI | TCCRAC | 5 cut(s) | 16, 444, 788, 979, 1141 |
| Mph1103I | ATGCAT | 2 cut(s) | 129, 809 |
| MseI | TTAA | 7 cut(s) | 11, 105, 497, 852, 1232, 1335, 1806 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2409 |
| MspA1I | CMGCKG | 2 cut(s) | 715, 1757 |
| MspCI | CTTAAG | 1 cut(s) | 1805 |
| MspR9I | CCNGG | 3 cut(s) | 507, 1740, 2279 |
| MunI | CAATTG | 2 cut(s) | 942, 1992 |
| Mva1269I | GAATGC | 3 cut(s) | 127, 232, 1753 |
| MvaI | CCWGG | 3 cut(s) | 507, 1740, 2279 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1651 |
| NcoI | CCATGG | 1 cut(s) | 771 |
| NdeII | GATC | 7 cut(s) | 319, 700, 955, 1181, 1206, 2064, 2258 |
| NheI | GCTAGC | 1 cut(s) | 2326 |
| NlaIV | GGNNCC | 3 cut(s) | 371, 702, 1052 |
| NmeAIII | GCCGAG | 2 cut(s) | 363, 446 |
| NmuCI | GTSAC | 6 cut(s) | 325, 531, 936, 1607, 2150, 2411 |
| NsbI | TGCGCA | 1 cut(s) | 1305 |
| NsiI | ATGCAT | 2 cut(s) | 129, 809 |
| NspI | RCATGY | 2 cut(s) | 200, 983 |
| PaqCI | CACCTGC | 1 cut(s) | 2399 |
| PciI | ACATGT | 1 cut(s) | 196 |
| PctI | GAATGC | 3 cut(s) | 127, 232, 1753 |
| PfeI | GAWTC | 7 cut(s) | 1034, 1196, 1517, 1905, 2013, 2126, 2357 |
| Pfl23II | CGTACG | 1 cut(s) | 1603 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 76 |
| PfoI | TCCNGGA | 1 cut(s) | 2277 |
| PkrI | GCNGC | 4 cut(s) | 232, 568, 1753, 1756 |
| Ppu21I | YACGTR | 1 cut(s) | 1607 |
| PscI | ACATGT | 1 cut(s) | 196 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1771 |
| Psp6I | CCWGG | 3 cut(s) | 505, 1738, 2277 |
| PspGI | CCWGG | 3 cut(s) | 505, 1738, 2277 |
| PspLI | CGTACG | 1 cut(s) | 1603 |
| PspN4I | GGNNCC | 3 cut(s) | 371, 702, 1052 |
| PspPI | GGNCC | 4 cut(s) | 23, 370, 1001, 1050 |
| PstI | CTGCAG | 2 cut(s) | 1756, 2107 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2111 |
| PsuI | RGATCY | 5 cut(s) | 319, 700, 1181, 1206, 2064 |
| PvuII | CAGCTG | 1 cut(s) | 715 |
| RsaI | GTAC | 5 cut(s) | 241, 1017, 1605, 2040, 2223 |
| RsaNI | GTAC | 5 cut(s) | 240, 1016, 1604, 2039, 2222 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2409 |
| SaqAI | TTAA | 7 cut(s) | 11, 105, 497, 852, 1232, 1335, 1806 |
| SatI | GCNGC | 4 cut(s) | 231, 567, 1752, 1755 |
| Sau3AI | GATC | 7 cut(s) | 319, 700, 955, 1181, 1206, 2064, 2258 |
| Sau96I | GGNCC | 4 cut(s) | 23, 370, 1001, 1050 |
| ScaI | AGTACT | 1 cut(s) | 241 |
| ScrFI | CCNGG | 3 cut(s) | 507, 1740, 2279 |
| SduI | GDGCHC | 4 cut(s) | 309, 690, 791, 2100 |
| SfaNI | GCATC | 5 cut(s) | 114, 193, 268, 1178, 2272 |
| SfcI | CTRYAG | 5 cut(s) | 1149, 1452, 1752, 2091, 2103 |
| SinI | GGWCC | 4 cut(s) | 23, 370, 1001, 1050 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2409 |
| SmlI | CTYRAG | 4 cut(s) | 349, 404, 782, 1805 |
| SmoI | CTYRAG | 4 cut(s) | 349, 404, 782, 1805 |
| SsiI | CCGC | 2 cut(s) | 1139, 1757 |
| SspMI | CTAG | 5 cut(s) | 431, 729, 1563, 1878, 2327 |
| StyD4I | CCNGG | 3 cut(s) | 505, 1738, 2277 |
| StyI | CCWWGG | 3 cut(s) | 364, 430, 771 |
| TaaI | ACNGT | 4 cut(s) | 667, 1933, 2038, 2150 |
| TaiI | ACGT | 1 cut(s) | 1609 |
| TaqI | TCGA | 2 cut(s) | 1347, 1963 |
| TatI | WGTACW | 3 cut(s) | 239, 1015, 2221 |
| TfiI | GAWTC | 7 cut(s) | 1034, 1196, 1517, 1905, 2013, 2126, 2357 |
| Tru1I | TTAA | 7 cut(s) | 11, 105, 497, 852, 1232, 1335, 1806 |
| Tru9I | TTAA | 7 cut(s) | 11, 105, 497, 852, 1232, 1335, 1806 |
| TscAI | CASTG | 5 cut(s) | 138, 598, 1819, 1960, 1987 |
| TseFI | GTSAC | 6 cut(s) | 325, 531, 936, 1607, 2150, 2411 |
| TseI | GCWGC | 4 cut(s) | 230, 566, 1751, 1754 |
| Tsp45I | GTSAC | 6 cut(s) | 325, 531, 936, 1607, 2150, 2411 |
| TspGWI | ACGGA | 2 cut(s) | 1761, 2065 |
| TspRI | CASTG | 5 cut(s) | 138, 598, 1819, 1960, 1987 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 76 |
| Vha464I | CTTAAG | 1 cut(s) | 1805 |
| VpaK11BI | GGWCC | 4 cut(s) | 23, 370, 1001, 1050 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 177, 434 |
| XceI | RCATGY | 2 cut(s) | 200, 983 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 598, 1691 |
| XmaJI | CCTAGG | 1 cut(s) | 430 |
| XspI | CTAG | 5 cut(s) | 431, 729, 1563, 1878, 2327 |
| ZrmI | AGTACT | 1 cut(s) | 241 |
| Zsp2I | ATGCAT | 2 cut(s) | 129, 809 |